Sensitivity Encoding for Aligned Multishot Magnetic Resonance Reconstruction

IEEE Transactions on Computational Imaging

Volumn 2, Issue 3, 2016, Pages 266-280

  Cordero Grande, Lucilio ^a   Teixeira, Rui Pedro A G ^a   Hughes, Emer J ^a   Hutter, Jana ^a   Price, Anthony N ^a   Hajnal, Joseph V ^a  

^a ST THOMAS HOSPITAL   (United Kingdom)

Author keywords

Image reconstruction; magnetic resonance; motion correction; multishot acquisition; parallel imaging

Indexed keywords

BRAIN MAPPING; COMPUTER VISION; ENCODING (SYMBOLS); IMAGE ENHANCEMENT; ITERATIVE METHODS; MAGNETIC RESONANCE; MAGNETIC RESONANCE IMAGING; MAGNETISM; SIGNAL ENCODING;

IMAGES RECONSTRUCTION; K-SPACE; MAGNETIC RESONANCE RECONSTRUCTION; MOTION CORRECTION; MULTI-SHOT; MULTIPLE RECEIVER COILS; MULTISHOT ACQUISITION; PARALLEL IMAGING; RIGID MOTIONS; SENSITIVITY ENCODING;

IMAGE RECONSTRUCTION;

EID: 84991614906     PISSN: 25730436     EISSN: 23339403     Source Type: Journal    
DOI: 10.1109/TCI.2016.2557069     Document Type: Article

References (35)

1. M. A. Bernstein, K. F. King, and X. J. Zhou, Handbook of MRI Pulse Sequences. New York, NY, USA: Elsevier, 2004.
2. J. B. Andre, B. W. Bresnahan, M. Mossa-Basha, M. N. Hoff, C. P. Smith, Y. Anzai, andW. A. Cohen, "Towards quantifying the prevalence, severity, and cost associated with patientmotion during clinicalMRexaminations, " J. Amer. Coll. Radiol., vol. 12, no. 7, pp. 689-695, Jul. 2015.
3. J. Budde, G. Shajan, K. Scheffler, and R. Pohmann, "Ultra-high resolution imaging of the human brain using acquisition-weighted imaging at 9. 4 T, " Neuro Image, vol. 86, no. 1, pp. 592-598, Feb. 2014.
4. M. Zaitsev, J. Maclaren, and M. Herbst, "Motion artifacts in MRI: A complex problem with many partial solutions, " J. Magn. Reson. Imaging, vol. 42, no. 4, pp. 887-901, Oct. 2015.
5. M. Bydder, D. J. Larkman, and J. V. Hajnal, "Detection and elimination of motion artifacts by regeneration of k-space, " Magn. Reson. Med., vol. 47, no. 4, pp. 677-686, Apr. 2002.
6. A. A. Samsonov, J. Velikina, Y. Jung, E. G. Kholmovski, C. R. Johnson, andW. F. Block, "POCS-enhanced correction ofmotion artifacts in parallel MRI, " Magn. Reson. Med., vol. 63, no. 4, pp. 1104-1110, Apr. 2010.
7. R. Bammer, M. Aksoy, and C. Liu, "Augmented generalized SENSE reconstruction to correct for rigid body motion, " Magn. Reson. Med., vol. 57, no. 1, pp. 90-102, Jan. 2007.
8. J. G. Pipe, W. N. Gibbs, Z. Li, J. P. Karis, M. Schar, and N. R. Zwart, "Revised motion estimation algorithm for PROPELLER MRI, " Magn. Reson. Med., vol. 72, no. 2, pp. 430-437, Aug. 2014.
9. A. G. Anderson III, J. Velikina, W. Block, O. Wieben, and A. Samsonov, "Adaptive retrospective correction of motion artifacts in cranial MRI with multicoil three-dimensional radial acquisitions, " Magn. Reson. Med., vol. 69, no. 4, pp. 1094-1103, Apr. 2013.
10. A. Loktyushin, H. Nickisch, R. Pohmann, and B. Schölkopf, "Blind retrospective motion correction of MR images, " Magn. Reson. Med., vol. 70, no. 6, pp. 1608-1618, Dec. 2013.
11. A. Loktyushin, H. Nickisch, R. Pohmann, and B. Schölkopf, "Blindmultirigid retrospective motion correction ofMR images, " Magn. Reson. Med., vol. 73, no. 4, pp. 1457-1468, Apr. 2015.
12. F. Odille, P.-A. Vuissoz, P.-Y. Marie, and J. Felblinger, "Generalized reconstruction by inversion of coupled systems (GRICS) applied to freebreathing MRI, " Magn. Reson. Med., vol. 60, no. 1, pp. 146-157, Jul. 2008.
13. P. G. Batchelor, D. Atkinson, P. Irarrazaval, D. L. G. Hill, J. Hajnal, and D. Larkman, "Matrix description of general motion correction applied to multishot images, " Magn. Reson. Med., vol. 54, no. 5, pp. 1273-1280, Nov. 2005.
14. M. Unser, P. Thévenaz, and L. Yaroslavsky, "Convolution-based interpolation for fast, high-quality rotation of images, " vol. 4, no. 10, pp. 1375-1381, Oct. 1995.
15. T. Toffoli and J. Quick, "Three-dimensional rotations by three shears, " Graph. Models. Image Process., vol. 59, no. 2, pp. 89-95, Mar. 1997.
16. M. J. Allison, S. Ramani, and J. A. Fessler, "Accelerated regularized estimation ofMRcoil sensitivities using augmented Lagrangian methods, " vol. 32, no. 3, pp. 556-564, Mar. 2013.
17. K. P. Pruessmann, M. Weiger, P. Börnert, and P. Boesiger, "Advances in sensitivity encoding with arbitrary k-space trajectories, " Magn. Reson. Med., vol. 46, no. 4, pp. 638-651, Oct. 2001.
18. L.-A. Williams, T. J. DeVito, J. D. Winter, T. N. Orr, R. T. Thompson, and N. Gelman, "Optimization of 3D MP-RAGE for neonatal brain imaging at 3. 0 T, " Magn. Reson. Imaging, vol. 25, no. 8, pp. 1162-1170, Oct. 2007.
19. E. Hughes, T. Wichmann, L. Mager, F. Padormo, J. Hutter, J. Wurie, M. Fox, M. Sharma, A. D. Edwards, A. Kapetanakis, A. Allievi, and J. Hajnal, "Tackling the challenges of imaging the infant brain in a dedicated neonatal coil, " presented at the 23rd Ann. Meeting Int. Society Magnetic Resonance Medicine, Toronto, ON, Canada, May/Jun. 2015, p. 3094.
20. M. Buehrer, K. P. Pruessmann, P. Boesiger, and S. Kozerke, "Array compression for MRI with large coil arrays, " Magn. Reson. Med., vol. 57, no. 6, pp. 1131-1139, Jun. 2007.
21. Z. Yang, C. Zhang, and L. Xie, "Sparse MRI for motion correction, " in Proc. 10th IEEE Int. Symp. Biomed. Imaging: From Nano to Macro, Apr. 2013, pp. 962-965.
22. K. P. McGee, A. Manduca, J. P. Felmlee, S. J. Riederer, and R. L. Ehman, "Image metric-based correction (autocorrection) of motion effects: Analysis of image metrics, " J. Magn. Reson. Imaging, vol. 11, no. 2, pp. 174-181, Feb. 2000.
23. B. Adcock, A. Hansen, B. Roman, andG. Teschke, "Generalized sampling: Stable reconstructions, inverse problems and compressed sensing over the continuum, " Adv. Imag. Electron Phys., vol. 182, no. 1, pp. 187-279, 2014.
24. J. Schulz, T. Siegert, E. Reimer, C. Labadie, J. Maclaren, M. Herbst, M. Zaitsev, and R. Turner, "An embedded optical tracking system for motion-corrected magnetic resonance imaging at 7T, " Magn. Reson. Mater. Phy., vol. 25, no. 6, pp. 443-453, Dec. 2012.
25. M. Aksoy, C. Forman, M. Straka, T. Çukur, J. Hornegger, and R. Bammer, "Hybrid prospective and retrospective head motion correction to mitigate cross-calibration errors, " Magn. Reson. Med., vol. 67, no. 5, pp. 1237-1251, May 2012.
26. A. Gholipour, J. A. Estroff, and S. K. Warfield, "Robust super-resolution volume reconstruction from slice acquisitions: Application to fetal brain MRI, " IEEE Trans. Med. Imag., vol. 29, no. 10, pp. 1739-1758, Oct. 2010.
27. M. Kuklisova-Murgasova, G. Quaghebeur, M. A. Rutherford, J. V. Hajnal, and J. A. Schnabel, "Reconstruction of fetal brain MRI with intensity matching and complete outlier removal, " Med. Image Anal., vol. 16, no. 8, pp. 1550-1564, Dec. 2012.
28. A. Menini, G. S. Slavin, J. A. Stainsby, P. Ferry, J. Felblinger, and F. Odille, "Motion correction of multi-contrast images applied to T1 and T2 quantification in cardiac MRI, " Magn. Reson. Mater. Phys., vol. 28, no. 1, pp. 1-12, Feb. 2015.
29. L. Cordero-Grande, S. Merino-Caviedes, S. Aja-Fernández, and C. Alberola-López, "Groupwise elastic registration by a new sparsitypromoting metric: Application to the alignment of cardiac magnetic resonance perfusion images, " IEEE Trans. Pattern Anal. Mach. Intell., vol. 35, no. 11, pp. 2638-2650, Nov. 2013.
30. S. G. Lingala, E. DiBella, and M. Jacob, "Deformation corrected compressed sensing (DC-CS): A novel framework for accelerated dynamic MRI, " IEEE Trans. Med. Imag., vol. 34, no. 1, pp. 72-85, Jan. 2015.
31. J. Royuela-del-Val, L. Cordero-Grande, F. Simmross-Wattenberg, M. Martín-Fernández, and C. Alberola-López, "Non-rigid groupwise registration for motion estimation and compensation in compressed sensing reconstruction of breath-hold cardiac cine MRI, " Magn. Reson. Med., vol. 75, no. 4, pp. 1525-1536, Apr. 2016.
32. R. Winkelmann, P. Börnert, and O. Dössel, "Ghost artifact removal using a parallel imaging approach, " Magn. Reson. Med., vol. 54, no. 4, pp. 1002-1009, Oct. 2005.
33. L. Ying and J. Sheng, "Joint image reconstruction and sensitivity estimation in SENSE (JSENSE), " Magn. Reson. Med., vol. 57, no. 6, pp. 1196-1202, Jun. 2007.
34. J. M. Peeters and M. Fuderer, "SENSE with improved tolerance to inaccuracies in coil sensitivity maps, " Magn. Reson. Med., vol. 69, no. 6, pp. 1665-1669, Jun. 2013.
35. K. K. Bhatia, J. V. Hajnal, B. K. Puri, A. D. Edwards, and D. Rueckert, "Consistent groupwise non-rigid registration for atlas construction, " in Proc. IEEE Int. Symp. Biomed. Imaging: Nano to Macro, Apr. 2004, pp. 908-911.