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Volumn 36, Issue 8, 2016, Pages 801-809

A Novel Mutation in a Critical Region for the Methyl Donor Binding in DNMT3B Causes Immunodeficiency, Centromeric Instability, and Facial Anomalies Syndrome (ICF)

Author keywords

centromeric instability and facial anomalies syndrome; DNMT3B; hypogammaglobulinemia; ICF; Immunodeficiency; KREC; TREC

Indexed keywords

ALANINE; ANTIBIOTIC AGENT; ANTIFUNGAL AGENT; B LYMPHOCYTE RECEPTOR; DNA METHYLTRANSFERASE 3A; DNA METHYLTRANSFERASE 3B; IMMUNOGLOBULIN A; IMMUNOGLOBULIN G; IMMUNOGLOBULIN M; T LYMPHOCYTE RECEPTOR; T LYMPHOCYTE RECEPTOR V BETA; THREONINE; UNCLASSIFIED DRUG; DNA (CYTOSINE 5) METHYLTRANSFERASE;

EID: 84991067542     PISSN: 02719142     EISSN: 15732592     Source Type: Journal    
DOI: 10.1007/s10875-016-0340-z     Document Type: Article
Times cited : (16)

References (39)
  • 1
    • 0023848337 scopus 로고
    • Immunodeficiency, centromeric heterochromatin instability of chromosomes 1, 9, and 16, and facial anomalies: the ICF syndrome
    • COI: 1:STN:280:DyaL1c7nt1CgtQ%3D%3D
    • Maraschio P, Zuffardi O, Dalla Fior T, Tiepolo L. Immunodeficiency, centromeric heterochromatin instability of chromosomes 1, 9, and 16, and facial anomalies: the ICF syndrome. J Med Genet. 1988;25:173–80.
    • (1988) J Med Genet , vol.25 , pp. 173-180
    • Maraschio, P.1    Zuffardi, O.2    Dalla Fior, T.3    Tiepolo, L.4
  • 2
    • 34248167741 scopus 로고    scopus 로고
    • Immunodeficiency, centromeric region instability, facial anomalies syndrome (ICF)
    • Ehrlich M, Jackson K, Weemaes C. Immunodeficiency, centromeric region instability, facial anomalies syndrome (ICF). Orphanet J Rare Dis. 2006;1:2.
    • (2006) Orphanet J Rare Dis , vol.1 , pp. 2
    • Ehrlich, M.1    Jackson, K.2    Weemaes, C.3
  • 3
    • 0033435205 scopus 로고    scopus 로고
    • The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome
    • COI: 1:CAS:528:DyaK1MXnvFKlu7g%3D
    • Hansen RS, Wijmenga C, Luo P, et al. The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome. Proc Natl Acad Sci U S A. 1999;96:14412–7.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 14412-14417
    • Hansen, R.S.1    Wijmenga, C.2    Luo, P.3
  • 4
    • 79958846467 scopus 로고    scopus 로고
    • Mutations in ZBTB24 are associated with immunodeficiency, centromeric instability, and facial anomalies syndrome type 2
    • De Greef JC, Wang J, Balog J, et al. Mutations in ZBTB24 are associated with immunodeficiency, centromeric instability, and facial anomalies syndrome type 2. Am J Hum Genet. 2011;88:796–804.
    • (2011) Am J Hum Genet , vol.88 , pp. 796-804
    • De Greef, J.C.1    Wang, J.2    Balog, J.3
  • 5
    • 84938151124 scopus 로고    scopus 로고
    • Mutations in CDCA7 and HELLS cause immunodeficiency-centromeric instability-facial anomalies syndrome
    • COI: 1:CAS:528:DC%2BC2MXhtlCjsbnP
    • Thijssen PE, Ito Y, Grillo G, et al. Mutations in CDCA7 and HELLS cause immunodeficiency-centromeric instability-facial anomalies syndrome. Nat Commun. 2015;6:7870.
    • (2015) Nat Commun , vol.6 , pp. 7870
    • Thijssen, P.E.1    Ito, Y.2    Grillo, G.3
  • 6
    • 84861920481 scopus 로고    scopus 로고
    • Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient
    • COI: 1:CAS:528:DC%2BC38Xht1GisrzJ
    • Heyn H, Vida E, Sayols S, et al. Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient. Epigenetics. 2012;7:542–50.
    • (2012) Epigenetics , vol.7 , pp. 542-550
    • Heyn, H.1    Vida, E.2    Sayols, S.3
  • 7
    • 84941366089 scopus 로고    scopus 로고
    • Genome-wide DNA methylation analysis identifies novel hypomethylated non-pericentromeric genes with potential clinical implications in ICF syndrome
    • COI: 1:STN:280:DC%2BC28%2FhvF2gtw%3D%3D
    • Simo-Riudalbas L, Diaz-Lagares A, Gatto S, et al. Genome-wide DNA methylation analysis identifies novel hypomethylated non-pericentromeric genes with potential clinical implications in ICF syndrome. PLoS One. 2015;10, e0132517.
    • (2015) PLoS One , vol.10
    • Simo-Riudalbas, L.1    Diaz-Lagares, A.2    Gatto, S.3
  • 8
    • 84907555949 scopus 로고    scopus 로고
    • Dnmt3b prefers germ line genes and centromeric regions: lessons from the ICF syndrome and cancer and implications for diseases
    • COI: 1:CAS:528:DC%2BC2cXhvFKgu7vF
    • Walton EL, Francastel C, Velasco G. Dnmt3b prefers germ line genes and centromeric regions: lessons from the ICF syndrome and cancer and implications for diseases. Biology (Basel). 2014;3:578–605.
    • (2014) Biology (Basel) , vol.3 , pp. 578-605
    • Walton, E.L.1    Francastel, C.2    Velasco, G.3
  • 9
    • 39149145451 scopus 로고    scopus 로고
    • Clinical spectrum of immunodeficiency, centromeric instability and facial dysmorphism (ICF syndrome)
    • COI: 1:STN:280:DC%2BD1c%2FotlWguw%3D%3D
    • Hagleitner MM, Lankester A, Maraschio P, et al. Clinical spectrum of immunodeficiency, centromeric instability and facial dysmorphism (ICF syndrome). J Med Genet. 2008;45:93–9.
    • (2008) J Med Genet , vol.45 , pp. 93-99
    • Hagleitner, M.M.1    Lankester, A.2    Maraschio, P.3
  • 10
    • 84885945266 scopus 로고    scopus 로고
    • Heterogeneous clinical presentation in ICF syndrome: correlation with underlying gene defects
    • COI: 1:CAS:528:DC%2BC3sXhs1Cls7jE
    • Weemaes CMR, van Tol MJD, Wang J, et al. Heterogeneous clinical presentation in ICF syndrome: correlation with underlying gene defects. Eur J Hum Genet. 2013;21:1219–25.
    • (2013) Eur J Hum Genet , vol.21 , pp. 1219-1225
    • Weemaes, C.M.R.1    van Tol, M.J.D.2    Wang, J.3
  • 11
    • 84856251374 scopus 로고    scopus 로고
    • The kinetics of early T and B cell immune recovery after bone marrow transplantation in RAG-2-deficient SCID patients
    • COI: 1:CAS:528:DC%2BC38Xit1Citr8%3D
    • Lev A, Simon AJ, Bareket M, et al. The kinetics of early T and B cell immune recovery after bone marrow transplantation in RAG-2-deficient SCID patients. PLoS One. 2012;7, e30494.
    • (2012) PLoS One , vol.7
    • Lev, A.1    Simon, A.J.2    Bareket, M.3
  • 12
    • 84875221248 scopus 로고    scopus 로고
    • Thymic function in MHC class II-deficient patients
    • COI: 1:CAS:528:DC%2BC38XhvVWjtbfN
    • Lev A, Simon AJ, Broides A, et al. Thymic function in MHC class II-deficient patients. J Allergy Clin Immunol. 2013;131:831–9.
    • (2013) J Allergy Clin Immunol , vol.131 , pp. 831-839
    • Lev, A.1    Simon, A.J.2    Broides, A.3
  • 13
    • 84902375695 scopus 로고    scopus 로고
    • Disturbed B and T cell homeostasis and neogenesis in patients with ataxia telangiectasia
    • COI: 1:CAS:528:DC%2BC2cXnt1GhtL8%3D
    • Kraus M, Lev A, Simon A. Disturbed B and T cell homeostasis and neogenesis in patients with ataxia telangiectasia. J Clin Immunol. 2014;34:561–72.
    • (2014) J Clin Immunol , vol.34 , pp. 561-572
    • Kraus, M.1    Lev, A.2    Simon, A.3
  • 14
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • COI: 1:CAS:528:DC%2BD1MXot1Cjtbo%3D
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25:1754–60.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 15
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: a map reduce framework for analyzing next-generation DNA sequencing data
    • McKenna A, Hanna M, Banks E, et al. The Genome Analysis Toolkit: a map reduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010;20:393–303.
    • (2010) Genome Res , vol.20 , pp. 303-393
    • McKenna, A.1    Hanna, M.2    Banks, E.3
  • 16
    • 84860147579 scopus 로고    scopus 로고
    • A comprehensive framework for prioritizing variants in exome sequencing studies of Mendelian diseases
    • Li MX, Gui HS, Kwan JSH, Bao SY, Sham PC. A comprehensive framework for prioritizing variants in exome sequencing studies of Mendelian diseases. Nucleic Acids Res. 2012;40(7):e53.
    • (2012) Nucleic Acids Res , vol.40 , Issue.7 , pp. e53
    • Li, M.X.1    Gui, H.S.2    Kwan, J.S.H.3    Bao, S.Y.4    Sham, P.C.5
  • 17
    • 84941107270 scopus 로고    scopus 로고
    • Protein structure modeling with MODELLER
    • COI: 1:CAS:528:DC%2BC2MXns12isrc%3D
    • Webb B, Sali A. Protein structure modeling with MODELLER. Methods Mol Biol. 2014;1137:1–15.
    • (2014) Methods Mol Biol , vol.1137 , pp. 1-15
    • Webb, B.1    Sali, A.2
  • 18
    • 1842788912 scopus 로고    scopus 로고
    • Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins
    • COI: 1:CAS:528:DC%2BD2cXis1KktLk%3D
    • Eyal E, Najmanovich R, McConkey BJ, Edelman M, Sobolev V. Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins. J Comput Chem. 2004;25:712–24.
    • (2004) J Comput Chem , vol.25 , pp. 712-724
    • Eyal, E.1    Najmanovich, R.2    McConkey, B.J.3    Edelman, M.4    Sobolev, V.5
  • 19
    • 0025719208 scopus 로고
    • Efficient detection of three-dimensional structural motifs in biological macaromolecules by computer vision techniques
    • COI: 1:CAS:528:DyaK38XlsFSntQ%3D%3D
    • Nussinov R, Wolfson HJ. Efficient detection of three-dimensional structural motifs in biological macaromolecules by computer vision techniques. Proc Natl Acad Sci. 1991;88:10495–9.
    • (1991) Proc Natl Acad Sci , vol.88 , pp. 10495-10499
    • Nussinov, R.1    Wolfson, H.J.2
  • 20
    • 84904803708 scopus 로고    scopus 로고
    • DUET: a server for predicting effects of mutations on protein stability using an integrated computational approach
    • DE Pires V, Ascher DB, Blundell TL. DUET: a server for predicting effects of mutations on protein stability using an integrated computational approach. Nucleic Acids Res. 2014;42:314–9.
    • (2014) Nucleic Acids Res , vol.42 , pp. 314-319
    • De Pires, V.1    Ascher, D.B.2    Blundell, T.L.3
  • 21
    • 84893298981 scopus 로고    scopus 로고
    • MCSM: predicting the effects of mutations in proteins using graph-based signatures
    • COI: 1:CAS:528:DC%2BC2cXhs1Cjtrc%3D
    • DE Pires V, Ascher DB, Blundell TL. MCSM: predicting the effects of mutations in proteins using graph-based signatures. Bioinformatics. 2014;30:335–42.
    • (2014) Bioinformatics , vol.30 , pp. 335-342
    • De Pires, V.1    Ascher, D.B.2    Blundell, T.L.3
  • 22
    • 79959942908 scopus 로고    scopus 로고
    • SDM—a server for predicting effects of mutations on protein stability and malfunction
    • Worth CL, Preissner R, Blundell TL. SDM—a server for predicting effects of mutations on protein stability and malfunction. Nucleic Acids Res. 2011;39:215–22.
    • (2011) Nucleic Acids Res , vol.39 , pp. 215-222
    • Worth, C.L.1    Preissner, R.2    Blundell, T.L.3
  • 24
    • 23144461249 scopus 로고    scopus 로고
    • I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure
    • Capriotti E, Fariselli P, Casadio R. I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Res. 2005;33:306–10.
    • (2005) Nucleic Acids Res , vol.33 , pp. 306-310
    • Capriotti, E.1    Fariselli, P.2    Casadio, R.3
  • 25
    • 84928890627 scopus 로고    scopus 로고
    • Genetic alterations of DNA methylation machinery in human diseases
    • Hamidi T, Singh AK, Chen T. Genetic alterations of DNA methylation machinery in human diseases. Epigenomics. 2015;7:247–65.
    • (2015) Epigenomics , vol.7 , pp. 247-265
    • Hamidi, T.1    Singh, A.K.2    Chen, T.3
  • 26
    • 40049094942 scopus 로고    scopus 로고
    • Mammalian DNA methyltransferases: a structural perspective
    • Cheng X, Blumenthal RM. Mammalian DNA methyltransferases: a structural perspective. Structure. 2008;16:341–50.
    • (2008) Structure , vol.16 , pp. 341-350
    • Cheng, X.1    Blumenthal, R.M.2
  • 27
    • 84925511390 scopus 로고    scopus 로고
    • Structural insight into autoinhibition and histone H3-induced activation of DNMT3A
    • COI: 1:CAS:528:DC%2BC2cXhvFGltLzI
    • Guo X, Wang L, Li J, et al. Structural insight into autoinhibition and histone H3-induced activation of DNMT3A. Nature. 2015;517:640–4.
    • (2015) Nature , vol.517 , pp. 640-644
    • Guo, X.1    Wang, L.2    Li, J.3
  • 28
    • 0028010888 scopus 로고
    • Hhal methyltransferase flips its target base out of the DNA helix
    • COI: 1:STN:280:DyaK2c7itlensA%3D%3D
    • Klimasauskas S, Kumar S, Roberts RJ, Cheng X. Hhal methyltransferase flips its target base out of the DNA helix. Cell. 1994;76:357–69.
    • (1994) Cell , vol.76 , pp. 357-369
    • Klimasauskas, S.1    Kumar, S.2    Roberts, R.J.3    Cheng, X.4
  • 29
    • 0034530273 scopus 로고    scopus 로고
    • Genetic variation in ICF syndrome: evidence for genetic heterogeneity
    • Wijmenga C, Hansen RS, Gimelli G, et al. Genetic variation in ICF syndrome: evidence for genetic heterogeneity. Hum Mutat. 2000;16:509–17.
    • (2000) Hum Mutat , vol.16 , pp. 509-517
    • Wijmenga, C.1    Hansen, R.S.2    Gimelli, G.3
  • 30
    • 42649130058 scopus 로고    scopus 로고
    • ICF, an immunodeficiency syndrome: DNA methyltransferase 3B involvement, chromosome anomalies, and gene dysregulation
    • COI: 1:CAS:528:DC%2BD1cXltFCmu74%3D
    • Ehrlich M, Sanchez C, Shao C, et al. ICF, an immunodeficiency syndrome: DNA methyltransferase 3B involvement, chromosome anomalies, and gene dysregulation. Autoimmunity. 2008;41:253–71.
    • (2008) Autoimmunity , vol.41 , pp. 253-271
    • Ehrlich, M.1    Sanchez, C.2    Shao, C.3
  • 31
    • 1642401844 scopus 로고    scopus 로고
    • Defective B-cell-negative selection and terminal differentiation in the ICF syndrome
    • COI: 1:CAS:528:DC%2BD2cXjtVaksLw%3D
    • Blanco-Betancourt CE, Moncla A, Milili M, et al. Defective B-cell-negative selection and terminal differentiation in the ICF syndrome. Blood. 2004;103:2683–90.
    • (2004) Blood , vol.103 , pp. 2683-2690
    • Blanco-Betancourt, C.E.1    Moncla, A.2    Milili, M.3
  • 32
    • 0035667192 scopus 로고    scopus 로고
    • DNA methyltransferase 3B mutations linked to the ICF syndrome cause dysregulation of lymphogenesis genes
    • COI: 1:CAS:528:DC%2BD38XjtVensg%3D%3D
    • Ehrlich M, Buchanan KL, Tsien F, et al. DNA methyltransferase 3B mutations linked to the ICF syndrome cause dysregulation of lymphogenesis genes. Hum Mol Genet. 2001;10:2917–31.
    • (2001) Hum Mol Genet , vol.10 , pp. 2917-2931
    • Ehrlich, M.1    Buchanan, K.L.2    Tsien, F.3
  • 33
    • 84959246098 scopus 로고    scopus 로고
    • Genetic, cellular and clinical features of ICF syndrome: a French national survey
    • COI: 1:CAS:528:DC%2BC28Xislagt7g%3D
    • Sterlin D, Velasco G, Moshous D, et al. Genetic, cellular and clinical features of ICF syndrome: a French national survey. J Clin Immunol. 2016;36:149–59.
    • (2016) J Clin Immunol , vol.36 , pp. 149-159
    • Sterlin, D.1    Velasco, G.2    Moshous, D.3
  • 34
    • 50849099769 scopus 로고    scopus 로고
    • Hypomethylation of subtelomeric regions in ICF syndrome is associated with abnormally short telomeres and enhanced transcription from telomeric regions
    • COI: 1:CAS:528:DC%2BD1cXhtVGgt7bO
    • Yehezkel S, Segev Y, Viegas-Péquignot E, Skorecki K, Selig S. Hypomethylation of subtelomeric regions in ICF syndrome is associated with abnormally short telomeres and enhanced transcription from telomeric regions. Hum Mol Genet. 2008;17:2776–89.
    • (2008) Hum Mol Genet , vol.17 , pp. 2776-2789
    • Yehezkel, S.1    Segev, Y.2    Viegas-Péquignot, E.3    Skorecki, K.4    Selig, S.5
  • 35
  • 36
    • 33645735015 scopus 로고    scopus 로고
    • Roles for Dnmt3b in mammalian development: a mouse model for the ICF syndrome
    • COI: 1:CAS:528:DC%2BD28Xjs1Srt74%3D
    • Ueda Y, Okano M, Williams C, Chen T, Georgopoulos K, Li E. Roles for Dnmt3b in mammalian development: a mouse model for the ICF syndrome. Development. 2006;133:1183–92.
    • (2006) Development , vol.133 , pp. 1183-1192
    • Ueda, Y.1    Okano, M.2    Williams, C.3    Chen, T.4    Georgopoulos, K.5    Li, E.6
  • 37
    • 84976904305 scopus 로고    scopus 로고
    • ClinVar: public archive of interpretations of clinically relevant variants
    • Landrum MJ, Lee JM, Benson M, et al. ClinVar: public archive of interpretations of clinically relevant variants. Nucleic Acids Res. 2015;44:D862–8.
    • (2015) Nucleic Acids Res , vol.44 , pp. D862-D868
    • Landrum, M.J.1    Lee, J.M.2    Benson, M.3
  • 38
    • 0037903275 scopus 로고    scopus 로고
    • Human gene mutation database (HGMD): 2003 update
    • COI: 1:CAS:528:DC%2BD3sXkvVyhtrk%3D
    • Stenson PD, Ball EV, Mort M, et al. Human gene mutation database (HGMD): 2003 update. Hum Mutat. 2003;21:577–81.
    • (2003) Hum Mutat , vol.21 , pp. 577-581
    • Stenson, P.D.1    Ball, E.V.2    Mort, M.3
  • 39
    • 0242550686 scopus 로고    scopus 로고
    • Lymphocyte subsets in healthy children from birth through 18 years of age: the pediatric AIDS clinical trials group P1009 study
    • Shearer WT, Rosenblatt HM, Gelman RS, et al. Lymphocyte subsets in healthy children from birth through 18 years of age: the pediatric AIDS clinical trials group P1009 study. J Allergy Clin Immunol. 2003;112:973–80.
    • (2003) J Allergy Clin Immunol , vol.112 , pp. 973-980
    • Shearer, W.T.1    Rosenblatt, H.M.2    Gelman, R.S.3


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