-
1
-
-
77950628123
-
Rifamycins: Obstacles and opportunities
-
Aristoff, P. A., Garcia, G. A., Kirchhoff, P. D., and Hollis Showalter, H. D. (2010) Rifamycins: obstacles and opportunities. Tuberculosis 90, 94-118
-
(2010)
Tuberculosis
, vol.90
, pp. 94-118
-
-
Aristoff, P.A.1
Garcia, G.A.2
Kirchhoff, P.D.3
Hollis Showalter, H.D.4
-
2
-
-
84921730366
-
Resistance to rifampicin: A review
-
Goldstein, B. P. (2014) Resistance to rifampicin: a review. J. Antibiot. 67, 625-630
-
(2014)
J. Antibiot.
, vol.67
, pp. 625-630
-
-
Goldstein, B.P.1
-
3
-
-
0027320544
-
Rifampicin region revisited: New rifampicin-resistant and streptolydigin-resistant mutants in the β subunit of Escherichia coli RNA polymerase
-
Severinov, K., Soushko, M., Goldfarb, A., and Nikiforov, V. (1993) Rifampicin region revisited: new rifampicin-resistant and streptolydigin-resistant mutants in the β subunit of Escherichia coli RNA polymerase. J. Biol. Chem. 268, 14820-14825
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 14820-14825
-
-
Severinov, K.1
Soushko, M.2
Goldfarb, A.3
Nikiforov, V.4
-
4
-
-
0027538104
-
Detection of rifampicin-resistance mutations in Mycobacterium tuberculosis
-
Telenti, A., Imboden, P., Marchesi, F., Matter, L., Schopfer, K., Bodmer, T., Lowrie, D., Colston, M. J., and Cole, S. (1993) Detection of rifampicin-resistance mutations in Mycobacterium tuberculosis. Lancet 341, 647-650
-
(1993)
Lancet
, vol.341
, pp. 647-650
-
-
Telenti, A.1
Imboden, P.2
Marchesi, F.3
Matter, L.4
Schopfer, K.5
Bodmer, T.6
Lowrie, D.7
Colston, M.J.8
Cole, S.9
-
5
-
-
77951768374
-
Resistance to rifampicin: At the crossroads between ecological, genomic and medical concerns
-
Tupin, A., Gualtieri, M., Roquet-Banères, F., Morichaud, Z., Brodolin, K., and Leonetti, J.-P.(2010) Resistance to rifampicin: at the crossroads between ecological, genomic and medical concerns. Int. J. Antimicrob. Agents 35, 519-523
-
(2010)
Int. J. Antimicrob. Agents
, vol.35
, pp. 519-523
-
-
Tupin, A.1
Gualtieri, M.2
Roquet-Banères, F.3
Morichaud, Z.4
Brodolin, K.5
Leonetti, J.-P.6
-
6
-
-
42449159361
-
Rifamycin antibiotic resistance by ADP-ribosylation: Structure and diversity of Arr
-
Baysarowich, J., Koteva, K., Hughes, D. W., Ejim, L., Griffiths, E., Zhang, K., Junop, M., and Wright, G. D. (2008) Rifamycin antibiotic resistance by ADP-ribosylation: structure and diversity of Arr. Proc. Natl. Acad. Sci. U.S.A. 105, 4886-4891
-
(2008)
Proc. Natl. Acad. Sci. U.S.A
, vol.105
, pp. 4886-4891
-
-
Baysarowich, J.1
Koteva, K.2
Hughes, D.W.3
Ejim, L.4
Griffiths, E.5
Zhang, K.6
Junop, M.7
Wright, G.D.8
-
7
-
-
84866309704
-
Characterization of a rifampin-inactivating glycosyltransferase from a screen of environmental actinomycetes
-
Spanogiannopoulos, P., Thaker, M., Koteva, K., Waglechner, N., and Wright, G. D. (2012) Characterization of a rifampin-inactivating glycosyltransferase from a screen of environmental actinomycetes. Antimicrob. Agents Chemother. 56, 5061-5069
-
(2012)
Antimicrob. Agents Chemother.
, vol.56
, pp. 5061-5069
-
-
Spanogiannopoulos, P.1
Thaker, M.2
Koteva, K.3
Waglechner, N.4
Wright, G.D.5
-
8
-
-
0027222778
-
Inactivation of rifampin by Nocardia brasiliensis
-
Yazawa, K., Mikami, Y., Maeda, A., Akao, M., Morisaki, N., and Iwasaki, S. (1993) Inactivation of rifampin by Nocardia brasiliensis. Antimicrob. Agents Chemother. 37, 1313-1317
-
(1993)
Antimicrob. Agents Chemother.
, vol.37
, pp. 1313-1317
-
-
Yazawa, K.1
Mikami, Y.2
Maeda, A.3
Akao, M.4
Morisaki, N.5
Iwasaki, S.6
-
9
-
-
84962626291
-
Structural basis of rifampin inactivation by rifampin phosphotransferase
-
Qi, X., Lin, W., Ma, M., Wang, C., He, Y., He, N., Gao, J., Zhou, H., Xiao, Y., Wang, Y., and Zhang, P. (2016) Structural basis of rifampin inactivation by rifampin phosphotransferase. Proc. Natl. Acad. Sci. U.S.A. 113, 3803-3808
-
(2016)
Proc. Natl. Acad. Sci. U.S.A
, vol.113
, pp. 3803-3808
-
-
Qi, X.1
Lin, W.2
Ma, M.3
Wang, C.4
He, Y.5
He, N.6
Gao, J.7
Zhou, H.8
Xiao, Y.9
Wang, Y.10
Zhang, P.11
-
10
-
-
84900493268
-
A rifamycin inactivating phosphotransferase family shared by environmental and pathogenic bacteria
-
Spanogiannopoulos, P., Waglechner, N., Koteva, K., and Wright, G. D. (2014) A rifamycin inactivating phosphotransferase family shared by environmental and pathogenic bacteria. Proc. Natl. Acad. Sci. U.S.A. 111, 7102-7107
-
(2014)
Proc. Natl. Acad. Sci. U.S.A
, vol.111
, pp. 7102-7107
-
-
Spanogiannopoulos, P.1
Waglechner, N.2
Koteva, K.3
Wright, G.D.4
-
11
-
-
84971669517
-
Rifampin phosphotransferase is an unusual antibiotic resistance kinase
-
Stogios, P. J., Cox, G., Spanogiannopoulos, P., Pillon, M. C., Waglechner, N., Skarina, T., Koteva, K., Guarné, A., Savchenko, A., and Wright, G. D. (2016) Rifampin phosphotransferase is an unusual antibiotic resistance kinase. Nat. Commun. 7, 11343
-
(2016)
Nat. Commun.
, vol.7
-
-
Stogios, P.J.1
Cox, G.2
Spanogiannopoulos, P.3
Pillon, M.C.4
Waglechner, N.5
Skarina, T.6
Koteva, K.7
Guarné, A.8
Savchenko, A.9
Wright, G.D.10
-
12
-
-
0031038348
-
Monooxygenase-like sequence of a Rhodococcus equi gene conferring increased resistance to rifampin by inactivating this antibiotic
-
Andersen, S. J., Quan, S., Gowan, B., and Dabbs, E. R. (1997) Monooxygenase-like sequence of a Rhodococcus equi gene conferring increased resistance to rifampin by inactivating this antibiotic. Antimicrob. Agents Chemother. 41, 218-221
-
(1997)
Antimicrob. Agents Chemother.
, vol.41
, pp. 218-221
-
-
Andersen, S.J.1
Quan, S.2
Gowan, B.3
Dabbs, E.R.4
-
13
-
-
76449113588
-
Monooxygenation of rifampicin catalyzed by the rox gene product of Nocardia farcinica: Structure elucidation, gene identification and role in drug resistance
-
Hoshino, Y., Fujii, S., Shinonaga, H., Arai, K., Saito, F., Fukai, T., Satoh, H., Miyazaki, Y., and Ishikawa, J. (2010) Monooxygenation of rifampicin catalyzed by the rox gene product of Nocardia farcinica: structure elucidation, gene identification and role in drug resistance. J. Antibiot. 63, 23-28
-
(2010)
J. Antibiot.
, vol.63
, pp. 23-28
-
-
Hoshino, Y.1
Fujii, S.2
Shinonaga, H.3
Arai, K.4
Saito, F.5
Fukai, T.6
Satoh, H.7
Miyazaki, Y.8
Ishikawa, J.9
-
14
-
-
14844356959
-
Rifamycin-mode of action, resistance, and biosynthesis
-
Floss, H. G., and Yu, T.-W.(2005) Rifamycin-mode of action, resistance, and biosynthesis. Chem. Rev. 105, 621-632
-
(2005)
Chem. Rev.
, vol.105
, pp. 621-632
-
-
Floss, H.G.1
Yu, T.-W.2
-
15
-
-
33645767209
-
Contribution of rpoB2 RNA polymerase beta subunit gene to rifampin resistance in Nocardia species
-
Ishikawa, J., Chiba, K., Kurita, H., and Satoh, H. (2006) Contribution of rpoB2 RNA polymerase beta subunit gene to rifampin resistance in Nocardia species. Antimicrob. Agents Chemother. 50, 1342-1346
-
(2006)
Antimicrob. Agents Chemother.
, vol.50
, pp. 1342-1346
-
-
Ishikawa, J.1
Chiba, K.2
Kurita, H.3
Satoh, H.4
-
16
-
-
84871701728
-
Form follows function: Structural and catalytic variation in the class A flavoprotein monooxygenases
-
Crozier-Reabe, K., and Moran, G. (2012) Form follows function: structural and catalytic variation in the class A flavoprotein monooxygenases. Int. J. Mol. Sci. 13, 15601-15639
-
(2012)
Int. J. Mol. Sci.
, vol.13
, pp. 15601-15639
-
-
Crozier-Reabe, K.1
Moran, G.2
-
17
-
-
84877830592
-
Uncovering the enzymes that catalyze the final steps in oxytetracycline biosynthesis
-
Wang, P., Bashiri, G., Gao, X., Sawaya, M. R., and Tang, Y. (2013) Uncovering the enzymes that catalyze the final steps in oxytetracycline biosynthesis. J. Am. Chem. Soc. 135, 7138-7141
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 7138-7141
-
-
Wang, P.1
Bashiri, G.2
Gao, X.3
Sawaya, M.R.4
Tang, Y.5
-
18
-
-
0032524753
-
The crystal structure of phenol hydroxylase in complex with FAD and phenol provides evidence for a concerted conformational change in the enzyme and its cofactor during catalysis
-
Enroth, C., Neujahr, H., Schneider, G., and Lindqvist, Y. (1998) The crystal structure of phenol hydroxylase in complex with FAD and phenol provides evidence for a concerted conformational change in the enzyme and its cofactor during catalysis. Structure 6, 605-617
-
(1998)
Structure
, vol.6
, pp. 605-617
-
-
Enroth, C.1
Neujahr, H.2
Schneider, G.3
Lindqvist, Y.4
-
19
-
-
33751105570
-
Crystal structure of 3-hydroxybenzoate hydroxylase from Comamonas testosteroni has a large tunnel for substrate and oxygen access to the active site
-
Hiromoto, T., Fujiwara, S., Hosokawa, K., and Yamaguchi, H. (2006) Crystal structure of 3-hydroxybenzoate hydroxylase from Comamonas testosteroni has a large tunnel for substrate and oxygen access to the active site. J. Mol. Biol. 364, 878-896
-
(2006)
J. Mol. Biol.
, vol.364
, pp. 878-896
-
-
Hiromoto, T.1
Fujiwara, S.2
Hosokawa, K.3
Yamaguchi, H.4
-
20
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel, E., and Henrick, K. (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D Biol. Crystallogr. 60, 2256-2268
-
(2004)
Acta Crystallogr. D Biol. Crystallogr
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
21
-
-
84887964672
-
Molecular insight into substrate recognition and catalysis of Baeyer-Villiger monooxygenase MtmOIV, the key frame-modifying enzyme in the biosynthesis of anticancer agent mithramycin
-
Bosserman, M. A., Downey, T., Noinaj, N., Buchanan, S. K., and Rohr, J. (2013) Molecular insight into substrate recognition and catalysis of Baeyer-Villiger monooxygenase MtmOIV, the key frame-modifying enzyme in the biosynthesis of anticancer agent mithramycin. ACS Chem. Biol. 8, 2466-2477
-
(2013)
ACS Chem. Biol.
, vol.8
, pp. 2466-2477
-
-
Bosserman, M.A.1
Downey, T.2
Noinaj, N.3
Buchanan, S.K.4
Rohr, J.5
-
22
-
-
77950223101
-
Small-angle scattering for structural biology: Expanding the frontier while avoiding the pitfalls
-
Jacques, D. A., and Trewhella, J. (2010) Small-angle scattering for structural biology: expanding the frontier while avoiding the pitfalls. Protein Sci. 19, 642-657
-
(2010)
Protein Sci.
, vol.19
, pp. 642-657
-
-
Jacques, D.A.1
Trewhella, J.2
-
23
-
-
77954280480
-
FoXS: A web server for rapid computation and fitting of SAXS profiles
-
Schneidman-Duhovny, D., Hammel, M., and Sali, A. (2010) FoXS: a web server for rapid computation and fitting of SAXS profiles. Nucleic Acids Res. 38, W540-W544
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W540-W544
-
-
Schneidman-Duhovny, D.1
Hammel, M.2
Sali, A.3
-
24
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel, E., and Henrick, K. (2007) Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 372, 774-797
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
25
-
-
33745991798
-
Flavoprotein monooxygenases, a diverse class of oxidative biocatalysts
-
van Berkel, W. J. H., Kamerbeek, N. M., and Fraaije, M. W. (2006) Flavoprotein monooxygenases, a diverse class of oxidative biocatalysts. J. Biotechnol. 124, 670-689
-
(2006)
J. Biotechnol
, vol.124
, pp. 670-689
-
-
Van Berkel, W.J.H.1
Kamerbeek, N.M.2
Fraaije, M.W.3
-
26
-
-
9744270010
-
Protein dynamics and electrostatics in the function of p-hydroxybenzoate hydroxylase
-
Entsch, B., Cole, L. J., and Ballou, D. P. (2005) Protein dynamics and electrostatics in the function of p-hydroxybenzoate hydroxylase. Arch. Biochem. Biophys. 433, 297-311
-
(2005)
Arch. Biochem. Biophys.
, vol.433
, pp. 297-311
-
-
Entsch, B.1
Cole, L.J.2
Ballou, D.P.3
-
27
-
-
70349791995
-
Structural basis for substrate recognition and specificity in aklavinone-11-hydroxylase from rhodomycin biosynthesis
-
Lindqvist, Y., Koskiniemi, H., Jansson, A., Sandalova, T., Schnell, R., Liu, Z., Mäntsälä, P., Niemi, J., and Schneider, G. (2009) Structural basis for substrate recognition and specificity in aklavinone-11-hydroxylase from rhodomycin biosynthesis. J. Mol. Biol. 393, 966-977
-
(2009)
J. Mol. Biol.
, vol.393
, pp. 966-977
-
-
Lindqvist, Y.1
Koskiniemi, H.2
Jansson, A.3
Sandalova, T.4
Schnell, R.5
Liu, Z.6
Mäntsälä, P.7
Niemi, J.8
Schneider, G.9
-
28
-
-
84934444753
-
High-throughput SAXS for the characterization of biomolecules in solution: A practical approach
-
Dyer, K. N., Hammel, M., Rambo, R. P., Tsutakawa, S. E., Rodic, I., Classen, S., Tainer, J. A., and Hura, G. L. (2014) High-throughput SAXS for the characterization of biomolecules in solution: a practical approach. Methods Mol. Biol. 1091, 245-258
-
(2014)
Methods Mol. Biol.
, vol.1091
, pp. 245-258
-
-
Dyer, K.N.1
Hammel, M.2
Rambo, R.P.3
Tsutakawa, S.E.4
Rodic, I.5
Classen, S.6
Tainer, J.A.7
Hura, G.L.8
-
29
-
-
0141484613
-
PRIMUS: A Windows PC-based system for small-angle scattering data analysis
-
Konarev, P. V., Volkov, V. V., Sokolova, A. V., Koch, M. H. J., and Svergun, D. I. (2003) PRIMUS: a Windows PC-based system for small-angle scattering data analysis. J. Appl. Crystallogr. 36, 1277-1282
-
(2003)
J. Appl. Crystallogr
, vol.36
, pp. 1277-1282
-
-
Konarev, P.V.1
Volkov, V.V.2
Sokolova, A.V.3
Koch, M.H.J.4
Svergun, D.I.5
-
30
-
-
0026910457
-
Determination of the regularization parameter in indirect-transform methods using perceptual criteria
-
Svergun, D. (1992) Determination of the regularization parameter in indirect-transform methods using perceptual criteria. J. Appl. Crystallogr. 25, 495-503
-
(1992)
J. Appl. Crystallogr
, vol.25
, pp. 495-503
-
-
Svergun, D.1
-
31
-
-
0035010533
-
Determination of domain structure of proteins from x-ray solution scattering
-
Svergun, D. I., Petoukhov, M. V., and Koch, M. H. (2001) Determination of domain structure of proteins from x-ray solution scattering. Biophys. J. 80, 2946-2953
-
(2001)
Biophys. J
, vol.80
, pp. 2946-2953
-
-
Svergun, D.I.1
Petoukhov, M.V.2
Koch, M.H.3
-
32
-
-
0037701585
-
Uniqueness of ab initio shape determination in small-angle scattering
-
Volkov, V. V., and Svergun, D. I. (2003) Uniqueness of ab initio shape determination in small-angle scattering. J. Appl. Crystallogr. 36, 860-864
-
(2003)
J. Appl. Crystallogr
, vol.36
, pp. 860-864
-
-
Volkov, V.V.1
Svergun, D.I.2
-
33
-
-
77955358961
-
Using Situs for the integration of multi-resolution structures
-
Wriggers, W. (2010) Using Situs for the integration of multi-resolution structures. Biophys. Rev. 2, 21-27
-
(2010)
Biophys. Rev.
, vol.2
, pp. 21-27
-
-
Wriggers, W.1
-
35
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews, B. W. (1968) Solvent content of protein crystals. J. Mol. Biol. 33, 491-497
-
(1968)
J. Mol. Biol.
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
36
-
-
0000952473
-
On the treatment of negative intensity observations
-
French, G. S., and Wilson, K. S. (1978) On the treatment of negative intensity observations. Acta Crystallogr. A34, 517-525
-
(1978)
Acta Crystallogr
, vol.A34
, pp. 517-525
-
-
French, G.S.1
Wilson, K.S.2
-
37
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., and Read, R. J. (2007) Phaser crystallographic software. J. Appl. Crystallogr. 40, 658-674
-
(2007)
J. Appl. Crystallogr
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
38
-
-
43749083257
-
CHAINSAW: A program for mutating pdb files used as templates in molecular replacement
-
Stein, N. (2008) CHAINSAW: a program for mutating pdb files used as templates in molecular replacement. J. Appl. Crystallogr. 41, 641-643
-
(2008)
J. Appl. Crystallogr
, vol.41
, pp. 641-643
-
-
Stein, N.1
-
40
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr. 66, 486-501
-
(2010)
Acta Crystallogr. D Biol. Crystallogr
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
41
-
-
37349103121
-
Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard
-
Terwilliger, T. C., Grosse-Kunstleve, R. W., Afonine, P. V., Moriarty, N. W., Zwart, P. H., Hung, L.-W., Read, R. J., and Adams, P. D. (2008) Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard. Acta Crystallogr. D Biol. Crystallogr. 64, 61-69
-
(2008)
Acta Crystallogr. D Biol. Crystallogr
, vol.64
, pp. 61-69
-
-
Terwilliger, T.C.1
Grosse-Kunstleve, R.W.2
Afonine, P.V.3
Moriarty, N.W.4
Zwart, P.H.5
Hung, L.-W.6
Read, R.J.7
Adams, P.D.8
-
42
-
-
84860273177
-
Towards automated crystallographic structure refinement with phenix.refine
-
Afonine, P. V., Grosse-Kunstleve, R. W., Echols, N., Headd, J. J., Moriarty, N. W., Mustyakimov, M., Terwilliger, T. C., Urzhumtsev, A., Zwart, P. H., and Adams, P. D. (2012) Towards automated crystallographic structure refinement with phenix.refine. Acta Crystallogr. D Biol. Crystallogr. 68, 352-367
-
(2012)
Acta Crystallogr. D Biol. Crystallogr
, vol.68
, pp. 352-367
-
-
Afonine, P.V.1
Grosse-Kunstleve, R.W.2
Echols, N.3
Headd, J.J.4
Moriarty, N.W.5
Mustyakimov, M.6
Terwilliger, T.C.7
Urzhumtsev, A.8
Zwart, P.H.9
Adams, P.D.10
-
43
-
-
70349597601
-
Electronic Ligand Builder and Optimization Workbench (eLBOW): A tool for ligand coordinate and restraint generation
-
Moriarty, N. W., Grosse-Kunstleve, R. W., and Adams, P. D. (2009) electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation. Acta Crystallogr. D Biol. Crystallogr. 65, 1074-1080
-
(2009)
Acta Crystallogr. D Biol. Crystallogr
, vol.65
, pp. 1074-1080
-
-
Moriarty, N.W.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
-
44
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B., Arendall, W. B., 3rd, Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2010) MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21
-
(2010)
Acta Crystallogr. D Biol. Crystallogr
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
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