-
1
-
-
85074809320
-
Structural patterns in globular proteins
-
Levitt,M. and Chothia,C. (1976) Structural patterns in globular proteins. Nature, 261, 5552-558.
-
(1976)
Nature
, vol.261
, pp. 5552-5558
-
-
Levitt, M.1
Chothia, C.2
-
2
-
-
0019443447
-
The anatomy and taxonomy of protein structure
-
Richardson,J. (1981) The anatomy and taxonomy of protein structure. Adv. Protein Chem., 34, 167-339.
-
(1981)
Adv. Protein Chem
, vol.34
, pp. 167-339
-
-
Richardson, J.1
-
3
-
-
0027533260
-
Globin fold in a bacterial toxin
-
Holm,L. and Sander,C. (1993) Globin fold in a bacterial toxin. Nature 361, 309.
-
(1993)
Nature
, vol.361
, pp. 309
-
-
Holm, L.1
Sander, C.2
-
4
-
-
0028268204
-
Structural similarity between plant endochitinase and lysozymes from animals and phage: an evolutionary connection
-
Holm,L. and Sander,C. (1994) Structural similarity between plant endochitinase and lysozymes from animals and phage: an evolutionary connection. FEBS Lett., 340, 129-132.
-
(1994)
FEBS Lett
, vol.340
, pp. 129-132
-
-
Holm, L.1
Sander, C.2
-
5
-
-
0028402721
-
Three sisters, different names: 3alpha,20beta-hydroxysteroid dehydrogenase, dihydropteridine reductase and UDP-galactose 4-epimerase
-
Holm,L., Murzin,A. and Sander,C. (1994) Three sisters, different names: 3alpha,20beta-hydroxysteroid dehydrogenase, dihydropteridine reductase and UDP-galactose 4-epimerase. Nat. Struct. Biol., 1, 146-147.
-
(1994)
Nat. Struct. Biol
, vol.1
, pp. 146-147
-
-
Holm, L.1
Murzin, A.2
Sander, C.3
-
6
-
-
0028670767
-
LexA repressor and iron-uptake regulator from E. coli: new members of the CAP-like DNA-binding domain superfamily
-
Holm,L., Sander,C., Ruterjans,H., Schnarr,M., Fogh,R., Boelens,R. and Kaptein,R. (1994) LexA repressor and iron-uptake regulator from E. coli: new members of the CAP-like DNA-binding domain superfamily. Protein Eng., 7, 1449-1453.
-
(1994)
Protein Eng
, vol.7
, pp. 1449-1453
-
-
Holm, L.1
Sander, C.2
Ruterjans, H.3
Schnarr, M.4
Fogh, R.5
Boelens, R.6
Kaptein, R.7
-
7
-
-
0028969335
-
Evolutionary link between glycogen phosphorylase and a DNA modifying enzyme
-
Holm,L. and Sander,C. (1995) Evolutionary link between glycogen phosphorylase and a DNA modifying enzyme. EMBO J., 14, 1287-1293.
-
(1995)
EMBO J
, vol.14
, pp. 1287-1293
-
-
Holm, L.1
Sander, C.2
-
8
-
-
0029360327
-
DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily
-
Holm,L. and Sander,C. (1995) DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily. Trends Biochem., 20, 345-347.
-
(1995)
Trends Biochem
, vol.20
, pp. 345-347
-
-
Holm, L.1
Sander, C.2
-
9
-
-
0031000649
-
An evolutionary treasure: unification of a broad set of amidohydrolases related to urease
-
Holm,L. and Sander,C. (1997) An evolutionary treasure: unification of a broad set of amidohydrolases related to urease. Proteins, 28, 72-82.
-
(1997)
Proteins
, vol.28
, pp. 72-82
-
-
Holm, L.1
Sander, C.2
-
11
-
-
0028871926
-
Dali: a network tool for protein structure comparison
-
Holm,L. and Sander,C. (1995) Dali: a network tool for protein structure comparison. TiBS, 20, 478-480.
-
(1995)
TiBS
, vol.20
, pp. 478-480
-
-
Holm, L.1
Sander, C.2
-
12
-
-
77954288774
-
Dali server: conservation mapping in 3D
-
Holm,L. and Rosenström,P. (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res., 38, W545-W549.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. W545-W549
-
-
Holm, L.1
Rosenström, P.2
-
13
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm,L. and Sander,C. (1993) Protein structure comparison by alignment of distance matrices. J. Mol. Biol., 233, 123-138.
-
(1993)
J. Mol. Biol
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
14
-
-
0029785147
-
Mapping the protein universe
-
Holm,L. and Sander,C. (1996) Mapping the protein universe. Science, 273, 595-603.
-
(1996)
Science
, vol.273
, pp. 595-603
-
-
Holm, L.1
Sander, C.2
-
15
-
-
66549119395
-
Advances and pitfalls of protein structural alignment
-
Hasegawa,H. and Holm,L. (2009) Advances and pitfalls of protein structural alignment. Curr. Opin. Struct. Biol., 19, 381-389.
-
(2009)
Curr. Opin. Struct. Biol
, vol.19
, pp. 381-389
-
-
Hasegawa, H.1
Holm, L.2
-
16
-
-
0034753838
-
Identification of homology in protein structure classification
-
Dietmann,S. and Holm,L. (2001) Identification of homology in protein structure classification. Nat. Struct. Biol., 8, 953-957.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 953-957
-
-
Dietmann, S.1
Holm, L.2
-
17
-
-
38549153238
-
Data growth and its impact on the SCOP database: new developments
-
Andreeva,A., Howorth,D., Chandonia,J.-M., Brenner,S.E., Hubbard,T.J.P., Chothia,C. and Murzin,A.G. (2007) Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res., 36, D419-D425.
-
(2007)
Nucleic Acids Res
, vol.36
, pp. D419-D425
-
-
Andreeva, A.1
Howorth, D.2
Chandonia, J.-M.3
Brenner, S.E.4
Hubbard, T.J.P.5
Chothia, C.6
Murzin, A.G.7
-
18
-
-
84891811692
-
SCOPE: Structural Classification of Proteins-extended, integrating SCOP and ASTRAL data and classification of new structures
-
Fox,N.K., Brenner,S.E. and Chandonia,J.M. (2014) SCOPE: Structural Classification of Proteins-extended, integrating SCOP and ASTRAL data and classification of new structures. Nucleic Acids Res., 42, D304-D309.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D304-D309
-
-
Fox, N.K.1
Brenner, S.E.2
Chandonia, J.M.3
-
19
-
-
77957931761
-
jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web
-
Smits,S.A. and Ouverney,C.C. (2010) jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web. PLoS ONE, 5, e12267.
-
(2010)
PLoS ONE
, vol.5
, pp. e12267
-
-
Smits, S.A.1
Ouverney, C.C.2
-
20
-
-
84979856621
-
SANSparallel: interactive homology search against Uniprot
-
Somervuo,P. and Holm,L. (2015) SANSparallel: interactive homology search against Uniprot. Nucleic Acids Res., 43, W24-W29.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. W24-W29
-
-
Somervuo, P.1
Holm, L.2
-
21
-
-
0033824470
-
DaliLite workbench for protein structure comparison
-
Holm,L. and Park,J. (2000) DaliLite workbench for protein structure comparison. Bioinformatics, 16, 566-567.
-
(2000)
Bioinformatics
, vol.16
, pp. 566-567
-
-
Holm, L.1
Park, J.2
-
22
-
-
56649103902
-
Searching protein structure databases with DaliLite v.3
-
Holm,L., Kääriäinen,S., Rosenström,P. and Schenkel,A. (2008) Searching protein structure databases with DaliLite v.3. Bioinformatics, 24, 2780-2781.
-
(2008)
Bioinformatics
, vol.24
, pp. 2780-2781
-
-
Holm, L.1
Kääriäinen, S.2
Rosenström, P.3
Schenkel, A.4
-
23
-
-
84878307737
-
DALIX: optimal DALI protein structure alignment
-
Wohlers,I., Andonov,R. and Klau,G.W. (2013) DALIX: optimal DALI protein structure alignment. IEEE/ACM Trans. Comput. Biol. Bioinform., 10, 26-36.
-
(2013)
IEEE/ACM Trans. Comput. Biol. Bioinform
, vol.10
, pp. 26-36
-
-
Wohlers, I.1
Andonov, R.2
Klau, G.W.3
-
24
-
-
84892407811
-
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models
-
Wheeler,T.J., Clements,J. and Finn,R.D. (2014) Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models. BMC Bioinformatics, 15, 7.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 7
-
-
Wheeler, T.J.1
Clements, J.2
Finn, R.D.3
-
25
-
-
84929622388
-
PANNZER-high-throughput functional annotation of uncharacterized proteins in an error-prone environment
-
Koskinen,P., Törönen,P., Nokso-Koivisto,J. and Holm,L. (2015) PANNZER-high-throughput functional annotation of uncharacterized proteins in an error-prone environment. Bioinformatics, 31, 1544-1552.
-
(2015)
Bioinformatics
, vol.31
, pp. 1544-1552
-
-
Koskinen, P.1
Törönen, P.2
Nokso-Koivisto, J.3
Holm, L.4
-
26
-
-
0032529457
-
Phosphoesterase domains associated with DNA polymerases of diverse origins
-
Aravind,L. and Koonin,E.V. (1998) Phosphoesterase domains associated with DNA polymerases of diverse origins. Nucleic Acids Res., 26, 3746-3752.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 3746-3752
-
-
Aravind, L.1
Koonin, E.V.2
-
27
-
-
0035814923
-
High resolution X-ray structures of different metal-substituted forms of phosphotriesterase from Pseudomonas diminuta
-
Holden,H.M., Benning,M.M., Raushel,F.M. and Shim,H. (2001) High resolution X-ray structures of different metal-substituted forms of phosphotriesterase from Pseudomonas diminuta. Biochemistry, 40, 2712-2722.
-
(2001)
Biochemistry
, vol.40
, pp. 2712-2722
-
-
Holden, H.M.1
Benning, M.M.2
Raushel, F.M.3
Shim, H.4
-
28
-
-
84872100391
-
Functional annotation and three-dimensional structure of an incorrectly annotated dihydroorotase from cog3964 in the amidohydrolase superfamily
-
Ornelas,A., Korczynska,M., Ragumani,S., Kumaran,D., Narindoshvili,T., Shoichet,B.K., Swaminathan,S. and Raushel,F.M. (2013) Functional annotation and three-dimensional structure of an incorrectly annotated dihydroorotase from cog3964 in the amidohydrolase superfamily. Biochemistry, 52, 228-238.
-
(2013)
Biochemistry
, vol.52
, pp. 228-238
-
-
Ornelas, A.1
Korczynska, M.2
Ragumani, S.3
Kumaran, D.4
Narindoshvili, T.5
Shoichet, B.K.6
Swaminathan, S.7
Raushel, F.M.8
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