Application of the CRISPR/Cas9 gene editing technique to research on functional genomes of parasites

Parasitology International

Volumn 65, Issue 6, 2016, Pages 641-644

  Cui, Yubao ^a   Yu, Lili ^b  

^a MEDICAL SCHOOL OF SOUTHEAST UNIVERSITY   (China)

^b Yancheng Health Vocational and Technical College   (China)

Author keywords

CRISPR Cas9 systems; Diagnostics; Gene editing technique; Parasites; Parasitic disease

Indexed keywords

CRISPR ASSOCIATED PROTEIN;

CLINICAL RESEARCH; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEAT; CRISPR CAS SYSTEM; GENE FUNCTION; GENE STRUCTURE; GENETIC TRANSCRIPTION; GENOME ANALYSIS; HUMAN; IMMUNE SYSTEM; LEISHMANIA; NONHUMAN; PARASITE; PLASMODIUM; PRIORITY JOURNAL; REVIEW; STRUCTURE ANALYSIS; TOXOPLASMA GONDII; TRYPANOSOMA CRUZI; ANIMAL; GENE EDITING; GENETICS; GENOME; PROCEDURES; TOXOPLASMA;

ANIMALS; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEATS; GENE EDITING; GENOME, PROTOZOAN; HUMANS; LEISHMANIA; PARASITES; PLASMODIUM; TOXOPLASMA; TRYPANOSOMA CRUZI;

EID: 84989208888     PISSN: 13835769     EISSN: 18730329     Source Type: Journal    
DOI: 10.1016/j.parint.2016.08.011     Document Type: Review

References (37)

1. [1] Food and Agriculture Organization of the United Nations, Animal Health Control. http://www.fao.org/ag/againfo/programmes/en/lead/toolbox/Tech/18Hyg.htm (Accessed on 14 October 2015).
2. [2] Lau, A.O., An overview of the Babesia, Plasmodium and Theileria genomes: a comparative perspective. Mol. Biochem. Parasitol. 164 (2009), 1–8.
3. [3] Wirth, D.F., Biological revelations. Nature 419 (2002), 495–496.
4. [4] Ishino, Y., Shinagawa, H., Makino, K., Amemura, M., Nakata, A., Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product. J. Bacteriol. 169 (1987), 5429–5433.
5. [5] Mojica, F.J., Diez-Villasenor, C., Soria, E., Juez, G., Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria. Mol. Microbiol. 36 (2000), 244–246.
6. [6] Brouns, S.J., Jore, M.M., Lundgren, M., Westra, E.R., Slijkhuis, R.J., Snijders, A.P., et al. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321 (2008), 960–964.
7. [7] Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J.A., Charpentier, E., A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337 (2012), 816–821.
8. [8] Jansen, R., van Embden, J.D., Gaastra, W., Schouls, L.M., Identification of a novel family of sequence repeats among prokaryotes. OMICS 6 (2002), 23–33.
9. [9] Mojica, F.J., Ferrer, C., Juez, G., Rodriguez-Valera, F., Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning. Mol. Microbiol. 17 (1995), 85–93.
10. [10] Friedland, A.E., Tzur, Y.B., Esvelt, K.M., Colaiacovo, M.P., Church, G.M., Calarco, J.A., Heritable genome editing in C. elegans via a CRISPR-Cas9 system. Nat. Methods 10 (2013), 741–743.
11. [11] Hwang, W.Y., Fu, Y., Reyon, D., Maeder, M.L., Tsai, S.Q., Sander, J.D., et al. Efficient genome editing in zebrafish using a CRISPR-Cas system. Nat. Biotechnol. 31 (2013), 227–229.
12. [12] DiCarlo, J.E., Norville, J.E., Mali, P., Rios, X., Aach, J., Church, G.M., Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems. Nucleic Acids Res. 41 (2013), 4336–4343.
13. [13] Li, D., Qiu, Z., Shao, Y., Chen, Y., Guan, Y., Liu, M., et al. Heritable gene targeting in the mouse and rat using a CRISPR-Cas system. Nat. Biotechnol. 31 (2013), 681–683.
14. [14] Cho, S.W., Kim, S., Kim, J.M., Kim, J.S., Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat. Biotechnol. 31 (2013), 230–232.
15. [15] Miao, J., Guo, D., Zhang, J., Huang, Q., Qin, G., Zhang, X., et al. Targeted mutagenesis in rice using CRISPR-Cas system. Cell Res. 23 (2013), 1233–1236.
16. [16] Hartenian, E., Doench, J.G., Genetic screens and functional genomics using CRISPR/Cas9 technology. FEBS J. 282 (2015), 1383–1393.
17. [17] Jansen, R., Embden, J.D., Gaastra, W., Schouls, L.M., Identification of genes that are associated with DNA repeats in prokaryotes. Mol. Microbiol. 43 (2002), 1565–1575.
18. [18] Bolotin, A., Quinquis, B., Sorokin, A., Ehrlich, S.D., Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151 (2005), 2551–2561.
19. [19] van der Oost, J., Westra, E.R., Jackson, R.N., Wiedenheft, B., Unravelling the structural and mechanistic basis of CRISPR-Cas systems. Nat. Rev. Microbiol. 12 (2014), 479–492.
20. [20] Zetsche, B., Gootenberg, J.S., Abudayyeh, O.O., Slaymaker, I.M., Makarova, K.S., Essletzbichler, P., et al. Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system. Cell 163 (2015), 759–771.
21. [21] Karvelis, T., Gasiunas, G., Siksnys, V., Programmable DNA cleavage in vitro by Cas9. Biochem. Soc. Trans. 41 (2013), 1401–1406.
22. [22] Lee, M.C., Fidock, D.A., CRISPR-mediated genome editing of Plasmodium falciparum malaria parasites. Genome Med., 6, 2014, 63.
23. [23] Wagner, J.C., Platt, R.J., Goldfless, S.J., Zhang, F., Niles, J.C., Efficient CRISPR-Cas9-mediated genome editing in Plasmodium falciparum. Nat. Methods 11 (2014), 915–918.
24. [24] Zhang, C., Xiao, B., Jiang, Y., Zhao, Y., Li, Z., Gao, H., et al. Efficient editing of malaria parasite genome using the CRISPR/Cas9 system. MBio, 5, 2014, e01414.
25. [25] World Health Organization, Malaria Fact Sheet. Accessed from http://www.who.int/mediacentre/factsheets/fs094/en/ (Accessed on 014 October 2015).
26. [26] Sollelis, L., Ghorbal, M., MacPherson, C.R., Martins, R.M., Kuk, N., Crobu, L., et al. First efficient CRISPR-Cas9-mediated genome editing in Leishmania parasites. Cell. Microbiol. 17 (2015), 1405–1412.
27. [27] Zhang, W.W., Matlashewski, G., CRISPR-Cas9-Mediated Genome Editing in Leishmania donovani. MBio, 6, 2015, e00861.
28. [28] Peng, D., Kurup, S.P., Yao, P.Y., Minning, T.A., Tarleton, R.L., CRISPR-Cas9-mediated single-gene and gene family disruption in Trypanosoma cruzi. MBio 6 (2015), e02097–e02114.
29. [29] Lander, N., Li, Z.H., Niyogi, S., Docampo, R., CRISPR/Cas9-induced disruption of paraflagellar rod protein 1 and 2 genes in Trypanosoma cruzi reveals their role in flagellar attachment. MBio, 6, 2015, e01012.
30. [30] Shen, B., Brown, K.M., Lee, T.D., Sibley, L.D., Efficient gene disruption in diverse strains of Toxoplasma gondii using CRISPR/CAS9. MBio, 5, 2014, e01114.
31. [31] Dong, S., Lin, J., Held, N.L., Clem, R.J., Passarelli, A.L., Franz, A.W., Heritable CRISPR/Cas9-mediated genome editing in the yellow fever mosquito, Aedes aegypti. PLoS One, 10, 2015, e0122353.
32. [32] Kistler, K.E., Vosshall, L.B., Matthews, B.J., Genome engineering with CRISPR-Cas9 in the mosquito Aedes aegypti. Cell Rep. 11 (2015), 51–60.
33. [33] Gantz, V.M., Jasinskiene, N., Tatarenkova, O., Fazekas, A., Macias, V.M., Bier, E., et al. Highly efficient Cas9-mediated gene drive for population modification of the malaria vector mosquito Anopheles stephensi. Proc. Natl. Acad. Sci. U. S. A. 112 (2015), E6736–E6743.
34. [34] Reardon, S., Welcome to the CRISPR zoo. Nature 531 (2016), 160–163.
35. [35] Nakanishi, T., Kato, Y., Matsuura, T., Watanabe, H., CRISPR/Cas-mediated targeted mutagenesis in Daphnia magna. PLoS One, 9, 2014, e98363.
36. [36] Sampson, T.R., Saroj, S.D., Llewellyn, A.C., Tzeng, Y.L., Weiss, D.S., A CRISPR/Cas system mediates bacterial innate immune evasion and virulence. Nature 497 (2013), 254–257.
37. [37] Shalem, O., Sanjana, N.E., Hartenian, E., Shi, X., Scott, D.A., Mikkelsen, T.S., et al. Genome-scale CRISPR-Cas9 knockout screening in human cells. Science 343 (2014), 84–87.