Genome engineering with CRISPR-Cas9 in the mosquito aedes aegypti

Cell Reports

Volumn 11, Issue 1, 2015, Pages 51-60

  Kistler, Kathryn E ^a   Vosshall, Leslie B ^a,b   Matthews, Benjamin J ^a,b  

^a ROCKEFELLER UNIVERSITY   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CAS9 PROTEIN; CRISPR ASSOCIATED PROTEIN; GENOMIC DNA; UNCLASSIFIED DRUG; DNA BINDING PROTEIN;

AEDES AEGYPTI; ARTICLE; BASE PAIRING; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEAT; DNA MODIFICATION; GENE LOCUS; GENE TARGETING; GENETIC ENGINEERING; GENOME; GENOME ENGINEERING; GENOTYPE; GERMLINE MUTATION; NONHUMAN; PRIORITY JOURNAL; SITE DIRECTED MUTAGENESIS; STREPTOCOCCUS PYOGENES; AEDES; ANIMAL; CRISPR CAS SYSTEM; GENE VECTOR; GENETICS; INSECT GENOME; MUTAGENESIS; MUTATION; NUCLEOTIDE SEQUENCE; RNA EDITING;

AEDES AEGYPTI; DENGUE VIRUS GROUP;

AEDES; ANIMALS; BASE SEQUENCE; CRISPR-CAS SYSTEMS; DNA-BINDING PROTEINS; GENETIC ENGINEERING; GENETIC VECTORS; GENOME, INSECT; MUTAGENESIS; MUTATION; RNA EDITING;

EID: 84927695100     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2015.03.009     Document Type: Article

References (38)

1. Alphey L. Genetic control of mosquitoes. Annu. Rev. Entomol. 2014, 59:205-224.
2. Aryan A., Anderson M.A.E., Myles K.M., Adelman Z.N. TALEN-based gene disruption in the dengue vector Aedes aegypti. PLoS ONE 2013, 8:e60082.
3. Aryan A., Anderson M.A.E., Myles K.M., Adelman Z.N. Germline excision of transgenes in Aedes aegypti by homing endonucleases. Sci. Rep. 2013, 3:1603.
4. Aryan A., Myles K.M., Adelman Z.N. Targeted genome editing in Aedes aegypti using TALENs. Methods 2014, 69:38-45.
5. Bassett A.R., Tibbit C., Ponting C.P., Liu J.-L. Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system. Cell Rep. 2013, 4:220-228.
6. Beumer K.J., Trautman J.K., Mukherjee K., Carroll D. DonorDNA utilization during gene targeting with zinc-finger nucleases. G3 (Bethesda) 2013, 3:657-664.
7. Beumer K.J., Trautman J.K., Christian M., Dahlem T.J., Lake C.M., Hawley R.S., Grunwald D.J., Voytas D.F., Carroll D. Comparing zinc finger nucleases and transcription activator-like effector nucleases for gene targeting in Drosophila. G3 (Bethesda) 2013, 3:1717-1725.
8. Bhatt S., Gething P.W., Brady O.J., Messina J.P., Farlow A.W., Moyes C.L., Drake J.M., Brownstein J.S., Hoen A.G., Sankoh O., et al. The global distribution and burden of dengue. Nature 2013, 496:504-507.
9. Brinkman E.K., Chen T., Amendola M., van Steensel B. Easy quantitative assessment of genome editing by sequence trace decomposition. Nucleic Acids Res. 2014, 42:e168.
10. Carroll D. Genome engineering with targetable nucleases. Annu. Rev. Biochem. 2014, 83:409-439.
11. Coates C.J., Jasinskiene N., Miyashiro L., James A.A. Mariner transposition and transformation of the yellow fever mosquito, Aedes aegypti. Proc. Natl. Acad. Sci. USA 1998, 95:3748-3751.
12. Dahlem T.J., Hoshijima K., Jurynec M.J., Gunther D., Starker C.G., Locke A.S., Weis A.M., Voytas D.F., Grunwald D.J. Simple methods for generating and detecting locus-specific mutations induced with TALENs in the zebrafish genome. PLoS Genet. 2012, 8:e1002861.
13. DeGennaro M., McBride C.S., Seeholzer L., Nakagawa T., Dennis E.J., Goldman C., Jasinskiene N., James A.A., Vosshall L.B. orco mutant mosquitoes lose strong preference for humans and are not repelled by volatile DEET. Nature 2013, 498:487-491.
14. DePristo M.A., Banks E., Poplin R., Garimella K.V., Maguire J.R., Hartl C., Philippakis A.A., del Angel G., Rivas M.A., Hanna M., et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 2011, 43:491-498.
15. Doudna J.A., Charpentier E. Genome editing. The new frontier of genome engineering with CRISPR-Cas9. Science 2014, 346:1258096.
16. Fu Y., Sander J.D., Reyon D., Cascio V.M., Joung J.K. Improving CRISPR-Cas nuclease specificity using truncated guide RNAs. Nat. Biotechnol. 2014, 32:279-284.
17. Gagnon J.A., Valen E., Thyme S.B., Huang P., Ahkmetova L., Pauli A., Montague T.G., Zimmerman S., Richter C., Schier A.F. Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs. PLoS ONE 2014, 9:e98186.
18. Gratz S.J., Ukken F.P., Rubinstein C.D., Thiede G., Donohue L.K., Cummings A.M., O'Connor-Giles K.M. Highly specific and efficient CRISPR/Cas9-catalyzed homology-directed repair in Drosophila. Genetics 2014, 196:961-971.
19. Holleley, C., and Sutcliffe, A. (2014). 2014 Methods in Anopheles Research (Centers for Disease Control). Atlanta, GA. Accessed 2/19/2015. http://www.mr4.org/AnophelesProgram/TrainingMethods.aspx.
20. Hsu P.D., Scott D.A., Weinstein J.A., Ran F.A., Konermann S., Agarwala V., Li Y., Fine E.J., Wu X., Shalem O., et al. DNA targeting specificity of RNA-guided Cas9 nucleases. Nat. Biotechnol. 2013, 31:827-832.
21. Hwang W.Y., Fu Y., Reyon D., Maeder M.L., Tsai S.Q., Sander J.D., Peterson R.T., Yeh J.-R.J., Joung J.K. Efficient genome editing in zebrafish using a CRISPR-Cas system. Nat. Biotechnol. 2013, 31:227-229.
22. Jinek M., Chylinski K., Fonfara I., Hauer M., Doudna J.A., Charpentier E. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 2012, 337:816-821.
23. Jinek M., Jiang F., Taylor D.W., Sternberg S.H., Kaya E., Ma E., Anders C., Hauer M., Zhou K., Lin S., et al. Structures of Cas9 endonucleases reveal RNA-mediated conformational activation. Science 2014, 343:1247997.
24. Juneja P., Osei-Poku J., Ho Y.S., Ariani C.V., Palmer W.J., Pain A., Jiggins F.M. Assembly of the genome of the disease vector Aedes aegypti onto a genetic linkage map allows mapping of genes affecting disease transmission. PLoS Negl. Trop. Dis. 2014, 8:e2652.
25. Liesch J., Bellani L.L., Vosshall L.B. Functional and genetic characterization of neuropeptide Y-like receptors in Aedes aegypti. PLoS Negl. Trop. Dis. 2013, 7:e2486.
26. Lobo N.F., Hua-Van A., Li X., Nolen B.M., Fraser M.J. Germ line transformation of the yellow fever mosquito, Aedes aegypti, mediated by transpositional insertion of a piggyBac vector. Insect Mol. Biol. 2002, 11:133-139.
27. Lobo N.F., Clayton J.R., Fraser M.J., Kafatos F.C., Collins F.H. High efficiency germ-line transformation of mosquitoes. Nat. Protoc. 2006, 1:1312-1317.
28. McMeniman C.J., Corfas R.A., Matthews B.J., Ritchie S.A., Vosshall L.B. Multimodal integration of carbon dioxide and other sensory cues drives mosquito attraction to humans. Cell 2014, 156:1060-1071.
29. Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J., Loftus B., Xi Z., Megy K., Grabherr M., et al. Genome sequence of Aedes aegypti, a major arbovirus vector. Science 2007, 316:1718-1723.
30. Peng Y., Clark K.J., Campbell J.M., Panetta M.R., Guo Y., Ekker S.C. Making designer mutants in model organisms. Development 2014, 141:4042-4054.
31. Ren X., Sun J., Housden B.E., Hu Y., Roesel C., Lin S., Liu L.-P., Yang Z., Mao D., Sun L., et al. Optimized gene editing technology for Drosophila melanogaster using germ line-specific Cas9. Proc. Natl. Acad. Sci. USA 2013, 110:19012-19017.
32. Ren X., Yang Z., Xu J., Sun J., Mao D., Hu Y., Yang S.-J., Qiao H.-H., Wang X., Hu Q., et al. Enhanced specificity and efficiency of the CRISPR/Cas9 system with optimized sgRNA parameters in Drosophila. Cell Rep. 2014, 9:1151-1162.
33. Reyon D., Tsai S.Q., Khayter C., Foden J.A., Sander J.D., Joung J.K. FLASH assembly of TALENs for high-throughput genome editing. Nat. Biotechnol. 2012, 30:460-465.
34. Sander J.D., Maeder M.L., Reyon D., Voytas D.F., Joung J.K., Dobbs D. ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool. Nucleic Acids Res. 2010, 38:W462-W468.
35. Stoddard B.L. Homing endonucleases from mobile group I introns: discovery to genome engineering. Mob. DNA 2014, 5:7.
36. Timoshevskiy V.A., Kinney N.A., deBruyn B.S., Mao C., Tu Z., Severson D.W., Sharakhov I.V., Sharakhova M.V. Genomic composition and evolution of Aedes aegypti chromosomes revealed by the analysis of physically mapped supercontigs. BMC Biol. 2014, 12:27.
37. Wu T.D., Nacu S. Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 2010, 26:873-881.
38. Wu X., Scott D.A., Kriz A.J., Chiu A.C., Hsu P.D., Dadon D.B., Cheng A.W., Trevino A.E., Konermann S., Chen S., et al. Genome-wide binding ofthe CRISPR endonuclease Cas9 in mammalian cells. Nat. Biotechnol. 2014, 32:670-676.