-
1
-
-
33846991130
-
The mechanism of translation initiation in eukaryotes
-
eds Mathews M, Sonenberg N, Hershey JWB (Cold Spring Harbor Lab Press, Cold Spring Harbor, NY)
-
Pestova TV, Lorsch JR, Hellen CUT (2007) The mechanism of translation initiation in eukaryotes. Translational Control in Biology and Medicine, eds Mathews M, Sonenberg N, Hershey JWB (Cold Spring Harbor Lab Press, Cold Spring Harbor, NY), pp 87-128.
-
(2007)
Translational Control in Biology and Medicine
, pp. 87-128
-
-
Pestova, T.V.1
Lorsch, J.R.2
Hellen, C.U.T.3
-
2
-
-
84863889691
-
The mechanism of eukaryotic translation initiation: New insights and challenges
-
Hinnebusch AG, Lorsch JR (2012) The mechanism of eukaryotic translation initiation: New insights and challenges. Cold Spring Harb Perspect Biol 4(10):a011544.
-
(2012)
Cold Spring Harb Perspect Biol
, vol.4
, Issue.10
-
-
Hinnebusch, A.G.1
Lorsch, J.R.2
-
3
-
-
0027186325
-
A Saccharomyces cerevisiae homologue of mammalian translation initiation factor 4B contributes to RNA helicase activity
-
Altmann M, et al. (1993) A Saccharomyces cerevisiae homologue of mammalian translation initiation factor 4B contributes to RNA helicase activity. EMBO J 12(10):3997-4003.
-
(1993)
EMBO J
, vol.12
, Issue.10
, pp. 3997-4003
-
-
Altmann, M.1
-
4
-
-
77749323441
-
Control of cell survival and proliferation by mammalian eukaryotic initiation factor 4B
-
Shahbazian D, et al. (2010) Control of cell survival and proliferation by mammalian eukaryotic initiation factor 4B. Mol Cell Biol 30(6):1478-1485.
-
(2010)
Mol Cell Biol
, vol.30
, Issue.6
, pp. 1478-1485
-
-
Shahbazian, D.1
-
5
-
-
80052965200
-
Duplex unwinding and ATPase activities of the DEAD-box helicase eIF4A are coupled by eIF4G and eIF4B
-
Özeş AR, Feoktistova K, Avanzino BC, Fraser CS (2011) Duplex unwinding and ATPase activities of the DEAD-box helicase eIF4A are coupled by eIF4G and eIF4B. J Mol Biol 412(4):674-687.
-
(2011)
J Mol Biol
, vol.412
, Issue.4
, pp. 674-687
-
-
Özeş, A.R.1
Feoktistova, K.2
Avanzino, B.C.3
Fraser, C.S.4
-
6
-
-
84933567353
-
RNA biochemistry. Factor-dependent processivity in human eIF4A DEAD-box helicase
-
García-García C, Frieda KL, Feoktistova K, Fraser CS, Block SM (2015) RNA biochemistry. Factor-dependent processivity in human eIF4A DEAD-box helicase. Science 348(6242):1486-1488.
-
(2015)
Science
, vol.348
, Issue.6242
, pp. 1486-1488
-
-
García-García, C.1
Frieda, K.L.2
Feoktistova, K.3
Fraser, C.S.4
Block, S.M.5
-
7
-
-
0028331455
-
The translation initiation factor eIF-4B contains an RNA-binding region that is distinct and independent from its ribonucleoprotein consensus sequence
-
Méthot N, Pause A, Hershey JW, Sonenberg N (1994) The translation initiation factor eIF-4B contains an RNA-binding region that is distinct and independent from its ribonucleoprotein consensus sequence. Mol Cell Biol 14(4):2307-2316.
-
(1994)
Mol Cell Biol
, vol.14
, Issue.4
, pp. 2307-2316
-
-
Méthot, N.1
Pause, A.2
Hershey, J.W.3
Sonenberg, N.4
-
8
-
-
0028285942
-
Two structural domains of initiation factor eIF-4B are involved in binding to RNA
-
Naranda T, Strong WB, Menaya J, Fabbri BJ, Hershey JW (1994) Two structural domains of initiation factor eIF-4B are involved in binding to RNA. J Biol Chem 269(20):14465-14472.
-
(1994)
J Biol Chem
, vol.269
, Issue.20
, pp. 14465-14472
-
-
Naranda, T.1
Strong, W.B.2
Menaya, J.3
Fabbri, B.J.4
Hershey, J.W.5
-
9
-
-
52949097997
-
Interactions between eIF4AI and its accessory factors eIF4B and eIF4H
-
Rozovsky N, Butterworth AC, Moore MJ (2008) Interactions between eIF4AI and its accessory factors eIF4B and eIF4H. RNA 14(10):2136-2148.
-
(2008)
RNA
, vol.14
, Issue.10
, pp. 2136-2148
-
-
Rozovsky, N.1
Butterworth, A.C.2
Moore, M.J.3
-
10
-
-
84890857898
-
eIF4B and eIF4G jointly stimulate eIF4A ATPase and unwinding activities by modulation of the eIF4A conformational cycle
-
Andreou AZ, Klostermeier D (2014) eIF4B and eIF4G jointly stimulate eIF4A ATPase and unwinding activities by modulation of the eIF4A conformational cycle. J Mol Biol 426(1):51-61.
-
(2014)
J Mol Biol
, vol.426
, Issue.1
, pp. 51-61
-
-
Andreou, A.Z.1
Klostermeier, D.2
-
11
-
-
84903974069
-
eIF4B, eIF4G and RNA regulate eIF4A activity in translation initiation by modulating the eIF4A conformational cycle
-
Harms U, Andreou AZ, Gubaev A, Klostermeier D (2014) eIF4B, eIF4G and RNA regulate eIF4A activity in translation initiation by modulating the eIF4A conformational cycle. Nucleic Acids Res 42(12):7911-7922.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.12
, pp. 7911-7922
-
-
Harms, U.1
Andreou, A.Z.2
Gubaev, A.3
Klostermeier, D.4
-
12
-
-
77956940474
-
The 5′-7-methylguanosine cap on eukaryotic mRNAs serves both to stimulate canonical translation initiation and to block an alternative pathway
-
Mitchell SF, et al. (2010) The 5′-7-methylguanosine cap on eukaryotic mRNAs serves both to stimulate canonical translation initiation and to block an alternative pathway. Mol Cell 39(6):950-962.
-
(2010)
Mol Cell
, vol.39
, Issue.6
, pp. 950-962
-
-
Mitchell, S.F.1
-
13
-
-
84872539401
-
Yeast eIF4B binds to the head of the 40S ribosomal subunit and promotes mRNA recruitment through its N-terminal and internal repeat domains
-
Walker SE, et al. (2013) Yeast eIF4B binds to the head of the 40S ribosomal subunit and promotes mRNA recruitment through its N-terminal and internal repeat domains. RNA 19(2):191-207.
-
(2013)
RNA
, vol.19
, Issue.2
, pp. 191-207
-
-
Walker, S.E.1
-
14
-
-
0029956389
-
Canonical eukaryotic initiation factors determine initiation of translation by internal ribosomal entry
-
Pestova TV, Hellen CUT, Shatsky IN (1996) Canonical eukaryotic initiation factors determine initiation of translation by internal ribosomal entry. Mol Cell Biol 16(12):6859-6869.
-
(1996)
Mol Cell Biol
, vol.16
, Issue.12
, pp. 6859-6869
-
-
Pestova, T.V.1
Hellen, C.U.T.2
Shatsky, I.N.3
-
15
-
-
57649234552
-
Translation initiation on mammalian mRNAs with structured 5′UTRs requires DExH-box protein DHX29
-
Pisareva VP, Pisarev AV, Komar AA, Hellen CU, Pestova TV (2008) Translation initiation on mammalian mRNAs with structured 5′UTRs requires DExH-box protein DHX29. Cell 135(7):1237-1250.
-
(2008)
Cell
, vol.135
, Issue.7
, pp. 1237-1250
-
-
Pisareva, V.P.1
Pisarev, A.V.2
Komar, A.A.3
Hellen, C.U.4
Pestova, T.V.5
-
16
-
-
78650907809
-
Bypassing of stems versus linear base-by-base inspection of mammalian mRNAs during ribosomal scanning
-
Abaeva IS, Marintchev A, Pisareva VP, Hellen CU, Pestova TV (2011) Bypassing of stems versus linear base-by-base inspection of mammalian mRNAs during ribosomal scanning. EMBO J 30(1):115-129.
-
(2011)
EMBO J
, vol.30
, Issue.1
, pp. 115-129
-
-
Abaeva, I.S.1
Marintchev, A.2
Pisareva, V.P.3
Hellen, C.U.4
Pestova, T.V.5
-
17
-
-
1442349828
-
Dynamics and processivity of 40S ribosome scanning on mRNA in yeast
-
Berthelot K, Muldoon M, Rajkowitsch L, Hughes J, McCarthy JE (2004) Dynamics and processivity of 40S ribosome scanning on mRNA in yeast. Mol Microbiol 51(4):987-1001.
-
(2004)
Mol Microbiol
, vol.51
, Issue.4
, pp. 987-1001
-
-
Berthelot, K.1
Muldoon, M.2
Rajkowitsch, L.3
Hughes, J.4
McCarthy, J.E.5
-
18
-
-
77956713468
-
The C-terminal region of eukaryotic translation initiation factor 3a (eIF3a) promotes mRNA recruitment, scanning, and, together with eIF3j and the eIF3b RNA recognition motif, selection of AUG start codons
-
Chiu WL, et al. (2010) The C-terminal region of eukaryotic translation initiation factor 3a (eIF3a) promotes mRNA recruitment, scanning, and, together with eIF3j and the eIF3b RNA recognition motif, selection of AUG start codons. Mol Cell Biol 30(18):4415-4434.
-
(2010)
Mol Cell Biol
, vol.30
, Issue.18
, pp. 4415-4434
-
-
Chiu, W.L.1
-
19
-
-
84938834141
-
Genome-wide analysis of translational efficiency reveals distinct but overlapping functions of yeast DEAD-box RNA helicases Ded1 and eIF4A
-
Sen ND, Zhou F, Ingolia NT, Hinnebusch AG (2015) Genome-wide analysis of translational efficiency reveals distinct but overlapping functions of yeast DEAD-box RNA helicases Ded1 and eIF4A. Genome Res 25(8):1196-1205.
-
(2015)
Genome Res
, vol.25
, Issue.8
, pp. 1196-1205
-
-
Sen, N.D.1
Zhou, F.2
Ingolia, N.T.3
Hinnebusch, A.G.4
-
20
-
-
0002411516
-
Physical and functional interactions between the mRNA cap structure and the poly(A) tail
-
eds Sonenberg N, Hershey JWB, Mathews MB (Cold Spring Harbor Lab Press, Cold Spring Harbor, NY)
-
Sachs A (2000) Physical and functional interactions between the mRNA cap structure and the poly(A) tail. Translational Control of Gene Expression, eds Sonenberg N, Hershey JWB, Mathews MB (Cold Spring Harbor Lab Press, Cold Spring Harbor, NY), pp 447-465.
-
(2000)
Translational Control of Gene Expression
, pp. 447-465
-
-
Sachs, A.1
-
21
-
-
77956306662
-
Genome-wide measurement of RNA secondary structure in yeast
-
Kertesz M, et al. (2010) Genome-wide measurement of RNA secondary structure in yeast. Nature 467(7311):103-107.
-
(2010)
Nature
, vol.467
, Issue.7311
, pp. 103-107
-
-
Kertesz, M.1
-
22
-
-
0017661527
-
Nucleotide sequences of 5′-terminal ribosome-protected initiation regions from two reovirus messages
-
Kozak M (1977) Nucleotide sequences of 5′-terminal ribosome-protected initiation regions from two reovirus messages. Nature 269(5627):391-394.
-
(1977)
Nature
, vol.269
, Issue.5627
, pp. 391-394
-
-
Kozak, M.1
-
23
-
-
0037388094
-
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
-
Arava Y, et al. (2003) Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 100(7):3889-3894.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.7
, pp. 3889-3894
-
-
Arava, Y.1
-
24
-
-
38449122331
-
In vivo deletion analysis of the architecture of a multiprotein complex of translation initiation factors
-
Nielsen KH, Valásek L (2007) In vivo deletion analysis of the architecture of a multiprotein complex of translation initiation factors. Methods Enzymol 431:15-32.
-
(2007)
Methods Enzymol
, vol.431
, pp. 15-32
-
-
Nielsen, K.H.1
Valásek, L.2
-
25
-
-
17844395239
-
Dissecting eukaryotic translation and its control by ribosome density mapping
-
Arava Y, Boas FE, Brown PO, Herschlag D (2005) Dissecting eukaryotic translation and its control by ribosome density mapping. Nucleic Acids Res 33(8):2421-2432.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.8
, pp. 2421-2432
-
-
Arava, Y.1
Boas, F.E.2
Brown, P.O.3
Herschlag, D.4
-
26
-
-
84968860875
-
The ribosomal protein Asc1/RACK1 is required for efficient translation of short mRNAs
-
Thompson MK, Rojas-Duran MF, Gangaramani P, Gilbert WV (2016) The ribosomal protein Asc1/RACK1 is required for efficient translation of short mRNAs. eLife 5:5.
-
(2016)
eLife
, vol.5
, pp. 5
-
-
Thompson, M.K.1
Rojas-Duran, M.F.2
Gangaramani, P.3
Gilbert, W.V.4
-
27
-
-
46249091565
-
Translation factors promote the formation of two states of the closed-loop mRNP
-
Amrani N, Ghosh S, Mangus DA, Jacobson A (2008) Translation factors promote the formation of two states of the closed-loop mRNP. Nature 453(7199):1276-1280.
-
(2008)
Nature
, vol.453
, Issue.7199
, pp. 1276-1280
-
-
Amrani, N.1
Ghosh, S.2
Mangus, D.A.3
Jacobson, A.4
-
28
-
-
84939188283
-
Global mRNA selection mechanisms for translation initiation
-
Costello J, et al. (2015) Global mRNA selection mechanisms for translation initiation. Genome Biol 16:10.
-
(2015)
Genome Biol
, vol.16
, pp. 10
-
-
Costello, J.1
-
29
-
-
79251570260
-
Depletion of eIF4G from yeast cells narrows the range of translational efficiencies genome-wide
-
Park EH, Zhang F, Warringer J, Sunnerhagen P, Hinnebusch AG (2011) Depletion of eIF4G from yeast cells narrows the range of translational efficiencies genome-wide. BMC Genomics 12(1):68.
-
(2011)
BMC Genomics
, vol.12
, Issue.1
, pp. 68
-
-
Park, E.H.1
Zhang, F.2
Warringer, J.3
Sunnerhagen, P.4
Hinnebusch, A.G.5
-
30
-
-
0345060297
-
Assembly of 48S translation initiation complexes from purified components with mRNAs that have some base pairing within their 5′ untranslated regions
-
Dmitriev SE, Terenin IM, Dunaevsky YE, Merrick WC, Shatsky IN (2003) Assembly of 48S translation initiation complexes from purified components with mRNAs that have some base pairing within their 5′ untranslated regions. Mol Cell Biol 23(24):8925-8933.
-
(2003)
Mol Cell Biol
, vol.23
, Issue.24
, pp. 8925-8933
-
-
Dmitriev, S.E.1
Terenin, I.M.2
Dunaevsky, Y.E.3
Merrick, W.C.4
Shatsky, I.N.5
-
31
-
-
84875082172
-
Weak 5′-mRNA secondary structures in short eukaryotic genes
-
Ding Y, Shah P, Plotkin JB (2012) Weak 5′-mRNA secondary structures in short eukaryotic genes. Genome Biol Evol 4(10):1046-1053.
-
(2012)
Genome Biol Evol
, vol.4
, Issue.10
, pp. 1046-1053
-
-
Ding, Y.1
Shah, P.2
Plotkin, J.B.3
-
32
-
-
78751609906
-
Multiple elements in the eIF4G1 N-terminus promote assembly of eIF4G1•PABP mRNPs in vivo
-
Park EH, et al. (2011) Multiple elements in the eIF4G1 N-terminus promote assembly of eIF4G1•PABP mRNPs in vivo. EMBO J 30(2):302-316.
-
(2011)
EMBO J
, vol.30
, Issue.2
, pp. 302-316
-
-
Park, E.H.1
-
33
-
-
79959981053
-
Life span extension via eIF4G inhibition is mediated by posttranscriptional remodeling of stress response gene expression in C. elegans
-
Rogers AN, et al. (2011) Life span extension via eIF4G inhibition is mediated by posttranscriptional remodeling of stress response gene expression in C. elegans. Cell Metab 14(1):55-66.
-
(2011)
Cell Metab
, vol.14
, Issue.1
, pp. 55-66
-
-
Rogers, A.N.1
-
34
-
-
62849126891
-
Requirement of RNA binding of mammalian eukaryotic translation initiation factor 4GI (eIF4GI) for efficient interaction of eIF4E with the mRNA cap
-
Yanagiya A, et al. (2009) Requirement of RNA binding of mammalian eukaryotic translation initiation factor 4GI (eIF4GI) for efficient interaction of eIF4E with the mRNA cap. Mol Cell Biol 29(6):1661-1669.
-
(2009)
Mol Cell Biol
, vol.29
, Issue.6
, pp. 1661-1669
-
-
Yanagiya, A.1
-
35
-
-
0041589832
-
The yeast eukaryotic initiation factor 4G (eIF4G) HEAT domain interacts with eIF1 and eIF5 and is involved in stringent AUG selection
-
He H, et al. (2003) The yeast eukaryotic initiation factor 4G (eIF4G) HEAT domain interacts with eIF1 and eIF5 and is involved in stringent AUG selection. Mol Cell Biol 23(15):5431-5445.
-
(2003)
Mol Cell Biol
, vol.23
, Issue.15
, pp. 5431-5445
-
-
He, H.1
-
36
-
-
80053022305
-
The DEAD-box protein Ded1 modulates translation by the formation and resolution of an eIF4F-mRNA complex
-
Hilliker A, Gao Z, Jankowsky E, Parker R (2011) The DEAD-box protein Ded1 modulates translation by the formation and resolution of an eIF4F-mRNA complex. Mol Cell 43(6):962-972.
-
(2011)
Mol Cell
, vol.43
, Issue.6
, pp. 962-972
-
-
Hilliker, A.1
Gao, Z.2
Jankowsky, E.3
Parker, R.4
-
37
-
-
0037184899
-
A novel role of the mammalian GSPT/eRF3 associating with poly(A)-binding protein in Cap/Poly(A)-dependent\ translation
-
Uchida N, Hoshino S, Imataka H, Sonenberg N, Katada T (2002) A novel role of the mammalian GSPT/eRF3 associating with poly(A)-binding protein in Cap/Poly(A)-dependent\ translation. J Biol Chem 277(52):50286-50292.
-
(2002)
J Biol Chem
, vol.277
, Issue.52
, pp. 50286-50292
-
-
Uchida, N.1
Hoshino, S.2
Imataka, H.3
Sonenberg, N.4
Katada, T.5
-
38
-
-
43349102982
-
Step-wise formation of eukaryotic double-row polyribosomes and circular translation of polysomal mRNA
-
Kopeina GS, et al. (2008) Step-wise formation of eukaryotic double-row polyribosomes and circular translation of polysomal mRNA. Nucleic Acids Res 36(8):2476-2488.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.8
, pp. 2476-2488
-
-
Kopeina, G.S.1
-
39
-
-
77956024408
-
Genome-wide translational profiling by ribosome footprinting
-
Ingolia NT (2010) Genome-wide translational profiling by ribosome footprinting. Methods Enzymol 470:119-142.
-
(2010)
Methods Enzymol
, vol.470
, pp. 119-142
-
-
Ingolia, N.T.1
-
40
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324(5924):218-223.
-
(2009)
Science
, vol.324
, Issue.5924
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
41
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11(10):R106.
-
(2010)
Genome Biol
, vol.11
, Issue.10
, pp. R106
-
-
Anders, S.1
Huber, W.2
|