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Volumn 222, Issue , 2016, Pages 24-32

Omics-based approaches reveal phospholipids remodeling of Rhizopus oryzae responding to furfural stress for fumaric acid-production from xylose

Author keywords

Fumaric acid; Furfural; Lipidomics; Metabolomics; R. oryzae

Indexed keywords

ALCOHOLS; ALDEHYDES; FURFURAL; METABOLISM; PHOSPHOLIPIDS; SOYBEAN OIL;

EID: 84988916056     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2016.09.101     Document Type: Article
Times cited : (13)

References (34)
  • 1
    • 77949874216 scopus 로고    scopus 로고
    • Pretreatment technologies for an efficient bioethanol production process based on enzymatic hydrolysis: a review
    • Alvira, P., Tomas-Pejo, E., Ballesteros, M., Negro, M.J., Pretreatment technologies for an efficient bioethanol production process based on enzymatic hydrolysis: a review. Bioresour. Technol. 101 (2010), 4851–4861.
    • (2010) Bioresour. Technol. , vol.101 , pp. 4851-4861
    • Alvira, P.1    Tomas-Pejo, E.2    Ballesteros, M.3    Negro, M.J.4
  • 2
    • 0030908893 scopus 로고    scopus 로고
    • +-dependent glycerol 3-phosphate dehydrogenase encoded by GPD1 and GPD2 have distinct roles in osmoadaptation and redox regulation
    • +-dependent glycerol 3-phosphate dehydrogenase encoded by GPD1 and GPD2 have distinct roles in osmoadaptation and redox regulation. EMBO J. 16 (1997), 2179–2187.
    • (1997) EMBO J. , vol.16 , pp. 2179-2187
    • Ansell, R.1    Granath, K.2    Hohmann, S.3    Thevelein, J.M.4    Adler, L.5
  • 3
    • 0034789483 scopus 로고    scopus 로고
    • Influence of the fluidity of the membrane on the response of microorganisms to environmental stresses
    • Beney, L., Gervais, P., Influence of the fluidity of the membrane on the response of microorganisms to environmental stresses. Appl. Microbiol. Biotechnol. 57 (2001), 34–42.
    • (2001) Appl. Microbiol. Biotechnol. , vol.57 , pp. 34-42
    • Beney, L.1    Gervais, P.2
  • 4
    • 15844379770 scopus 로고    scopus 로고
    • A phospholipid acts as a chaperone in assembly of a membrane transport protein
    • Bogdanov, M., Sun, J., Kaback, H.R., Dowhan, W., A phospholipid acts as a chaperone in assembly of a membrane transport protein. J. Biol. Chem. 271 (1996), 11615–11618.
    • (1996) J. Biol. Chem. , vol.271 , pp. 11615-11618
    • Bogdanov, M.1    Sun, J.2    Kaback, H.R.3    Dowhan, W.4
  • 5
    • 0028890566 scopus 로고
    • Adaptations to environmental stresses
    • Bohnert, H.J., Nelson, D.E., Jensen, R.G., Adaptations to environmental stresses. Plant Cell 7 (1995), 1099–1111.
    • (1995) Plant Cell , vol.7 , pp. 1099-1111
    • Bohnert, H.J.1    Nelson, D.E.2    Jensen, R.G.3
  • 6
    • 31944436780 scopus 로고    scopus 로고
    • Depletion of phosphatidylcholine in yeast induces shortening and increased saturation of the lipid acyl chains: evidence for regulation of intrinsic membrane curvature in a eukaryote
    • Boumann, H.A., Gubbens, J., Koorengevel, M.C., Oh, C.S., Martin, C.E., Heck, A.J., Patton-Vogt, J., Henry, S.A., de Kruijff, B., de Kroon, A.I., Depletion of phosphatidylcholine in yeast induces shortening and increased saturation of the lipid acyl chains: evidence for regulation of intrinsic membrane curvature in a eukaryote. Mol. Biol. Cell 17 (2006), 1006–1017.
    • (2006) Mol. Biol. Cell , vol.17 , pp. 1006-1017
    • Boumann, H.A.1    Gubbens, J.2    Koorengevel, M.C.3    Oh, C.S.4    Martin, C.E.5    Heck, A.J.6    Patton-Vogt, J.7    Henry, S.A.8    de Kruijff, B.9    de Kroon, A.I.10
  • 7
    • 0018797519 scopus 로고
    • Lipid polymorphism and the functional roles of lipids in biological membranes
    • Cullis, P.R., de Kruijff, B., Lipid polymorphism and the functional roles of lipids in biological membranes. Biochim. Biophys. Acta 559 (1979), 399–420.
    • (1979) Biochim. Biophys. Acta , vol.559 , pp. 399-420
    • Cullis, P.R.1    de Kruijff, B.2
  • 8
    • 84857784666 scopus 로고    scopus 로고
    • Comparative metabolic profiling of parental and inhibitors-tolerant yeasts during lignocellulosic ethanol fermentation
    • Ding, M.-Z., Wang, X., Yang, Y., Yuan, Y.-J., Comparative metabolic profiling of parental and inhibitors-tolerant yeasts during lignocellulosic ethanol fermentation. Metabolomics 8 (2012), 232–243.
    • (2012) Metabolomics , vol.8 , pp. 232-243
    • Ding, M.-Z.1    Wang, X.2    Yang, Y.3    Yuan, Y.-J.4
  • 9
    • 0028883178 scopus 로고
    • Phospholipid signaling
    • Divecha, N., Irvine, R.F., Phospholipid signaling. Cell 80 (1995), 269–278.
    • (1995) Cell , vol.80 , pp. 269-278
    • Divecha, N.1    Irvine, R.F.2
  • 11
    • 0032143971 scopus 로고    scopus 로고
    • Bacteria tolerant to organic solvents
    • Isken, S., de Bont, J.A., Bacteria tolerant to organic solvents. Extremophiles 2 (1998), 229–238.
    • (1998) Extremophiles , vol.2 , pp. 229-238
    • Isken, S.1    de Bont, J.A.2
  • 12
    • 84947493923 scopus 로고    scopus 로고
    • Study of metabolic profile of Rhizopus oryzae to enhance fumaric acid production under low pH condition
    • Liu, Y., Xu, Q., Lv, C., Yan, C., Li, S., Jiang, L., Huang, H., Ouyang, P., Study of metabolic profile of Rhizopus oryzae to enhance fumaric acid production under low pH condition. Appl. Biochem. Biotechnol. 177 (2015), 1508–1519.
    • (2015) Appl. Biochem. Biotechnol. , vol.177 , pp. 1508-1519
    • Liu, Y.1    Xu, Q.2    Lv, C.3    Yan, C.4    Li, S.5    Jiang, L.6    Huang, H.7    Ouyang, P.8
  • 13
    • 33750290903 scopus 로고    scopus 로고
    • Genomic adaptation of ethanologenic yeast to biomass conversion inhibitors
    • Liu, Z.L., Genomic adaptation of ethanologenic yeast to biomass conversion inhibitors. Appl. Microbiol. Biotechnol. 73 (2006), 27–36.
    • (2006) Appl. Microbiol. Biotechnol. , vol.73 , pp. 27-36
    • Liu, Z.L.1
  • 14
    • 79954648688 scopus 로고    scopus 로고
    • Molecular mechanisms of yeast tolerance and in situ detoxification of lignocellulose hydrolysates
    • Liu, Z.L., Molecular mechanisms of yeast tolerance and in situ detoxification of lignocellulose hydrolysates. Appl. Microbiol. Biotechnol. 90 (2011), 809–825.
    • (2011) Appl. Microbiol. Biotechnol. , vol.90 , pp. 809-825
    • Liu, Z.L.1
  • 15
    • 21244475101 scopus 로고    scopus 로고
    • Phosphatidylethanolamine-phosphatidylglycerol bilayer as a model of the inner bacterial membrane
    • Murzyn, K., Rog, T., Pasenkiewicz-Gierula, M., Phosphatidylethanolamine-phosphatidylglycerol bilayer as a model of the inner bacterial membrane. Biophys. J. 88 (2005), 1091–1103.
    • (2005) Biophys. J. , vol.88 , pp. 1091-1103
    • Murzyn, K.1    Rog, T.2    Pasenkiewicz-Gierula, M.3
  • 16
    • 84907938663 scopus 로고    scopus 로고
    • Comparative metabolomic-based metabolic mechanism hypothesis for microbial mixed cultures utilizing cane molasses wastewater for higher 2-phenylethanol production
    • Pan, X., Qi, H., Mu, L., Wen, J., Jia, X., Comparative metabolomic-based metabolic mechanism hypothesis for microbial mixed cultures utilizing cane molasses wastewater for higher 2-phenylethanol production. J. Agric. Food Chem. 62 (2014), 9927–9935.
    • (2014) J. Agric. Food Chem. , vol.62 , pp. 9927-9935
    • Pan, X.1    Qi, H.2    Mu, L.3    Wen, J.4    Jia, X.5
  • 17
    • 84902815726 scopus 로고    scopus 로고
    • Objective set of criteria for optimization of sample preparation procedures for ultra-high throughput untargeted blood plasma lipid profiling by ultra performance liquid chromatography-mass spectrometry
    • Sarafian, M.H., Gaudin, M., Lewis, M.R., Martin, F.P., Holmes, E., Nicholson, J.K., Dumas, M.E., Objective set of criteria for optimization of sample preparation procedures for ultra-high throughput untargeted blood plasma lipid profiling by ultra performance liquid chromatography-mass spectrometry. Anal. Chem. 86 (2014), 5766–5774.
    • (2014) Anal. Chem. , vol.86 , pp. 5766-5774
    • Sarafian, M.H.1    Gaudin, M.2    Lewis, M.R.3    Martin, F.P.4    Holmes, E.5    Nicholson, J.K.6    Dumas, M.E.7
  • 18
    • 44949231424 scopus 로고    scopus 로고
    • Analyzing real-time PCR data by the comparative CT method
    • Schmittgen, T.D., Livak, K.J., Analyzing real-time PCR data by the comparative CT method. Nat. Protoc. 3 (2008), 1101–1108.
    • (2008) Nat. Protoc. , vol.3 , pp. 1101-1108
    • Schmittgen, T.D.1    Livak, K.J.2
  • 20
    • 0000464846 scopus 로고    scopus 로고
    • Purification and characterization of phosphatidylethanolamine N-methyltransferase from Zymomonas mobilis
    • Tahara, Y., Ogawa, Y., Sakakibara, T., Yamada, Y., Purification and characterization of phosphatidylethanolamine N-methyltransferase from Zymomonas mobilis. Agric. Biol. Chem. 51 (2014), 1425–1430.
    • (2014) Agric. Biol. Chem. , vol.51 , pp. 1425-1430
    • Tahara, Y.1    Ogawa, Y.2    Sakakibara, T.3    Yamada, Y.4
  • 21
    • 84937761469 scopus 로고    scopus 로고
    • Comparative metabolic profiling reveals the key role of amino acids metabolism in the rapamycin overproduction by Streptomyces hygroscopicus
    • Wang, B., Liu, J., Liu, H., Huang, D., Wen, J., Comparative metabolic profiling reveals the key role of amino acids metabolism in the rapamycin overproduction by Streptomyces hygroscopicus. J. Ind. Microbiol. Biotechnol. 42 (2015), 949–963.
    • (2015) J. Ind. Microbiol. Biotechnol. , vol.42 , pp. 949-963
    • Wang, B.1    Liu, J.2    Liu, H.3    Huang, D.4    Wen, J.5
  • 22
    • 84921366345 scopus 로고    scopus 로고
    • A metabolic-based approach to improve xylose utilization for fumaric acid production from acid pretreated wheat bran by Rhizopus oryzae
    • Wang, G., Huang, D., Li, Y., Wen, J., Jia, X., A metabolic-based approach to improve xylose utilization for fumaric acid production from acid pretreated wheat bran by Rhizopus oryzae. Bioresour. Technol. 180 (2015), 119–127.
    • (2015) Bioresour. Technol. , vol.180 , pp. 119-127
    • Wang, G.1    Huang, D.2    Li, Y.3    Wen, J.4    Jia, X.5
  • 23
    • 84978832806 scopus 로고    scopus 로고
    • Inhibitor degradation and lipid accumulation potentials of oleaginous yeast Trichosporon cutaneum using lignocellulose feedstock
    • Wang, J., Gao, Q., Zhang, H., Bao, J., Inhibitor degradation and lipid accumulation potentials of oleaginous yeast Trichosporon cutaneum using lignocellulose feedstock. Bioresour. Technol. 218 (2016), 892–901.
    • (2016) Bioresour. Technol. , vol.218 , pp. 892-901
    • Wang, J.1    Gao, Q.2    Zhang, H.3    Bao, J.4
  • 24
    • 84885418841 scopus 로고    scopus 로고
    • Xylitol fermentation using hemicellulose hydrolysate prepared by acid pre-impregnated steam explosion of corncob
    • Wang, L., Fan, X., Tang, P., Yuan, Q., Xylitol fermentation using hemicellulose hydrolysate prepared by acid pre-impregnated steam explosion of corncob. J. Chem. Technol. Biotechnol. 88 (2013), 2067–2074.
    • (2013) J. Chem. Technol. Biotechnol. , vol.88 , pp. 2067-2074
    • Wang, L.1    Fan, X.2    Tang, P.3    Yuan, Q.4
  • 26
    • 59849096620 scopus 로고    scopus 로고
    • Comparative lipidomics of four strains of Saccharomyces cerevisiae reveals different responses to furfural, phenol, and acetic acid
    • Xia, J.-M., Yuan, Y.-J., Comparative lipidomics of four strains of Saccharomyces cerevisiae reveals different responses to furfural, phenol, and acetic acid. J. Agric. Food Chem. 57 (2008), 99–108.
    • (2008) J. Agric. Food Chem. , vol.57 , pp. 99-108
    • Xia, J.-M.1    Yuan, Y.-J.2
  • 27
    • 78649397977 scopus 로고    scopus 로고
    • Comparative lipidomic profiling of xylose-metabolizing S. cerevisiae and its parental strain in different media reveals correlations between membrane lipids and fermentation capacity
    • Xia, J., Jones, A.D., Lau, M.W., Yuan, Y.J., Dale, B.E., Balan, V., Comparative lipidomic profiling of xylose-metabolizing S. cerevisiae and its parental strain in different media reveals correlations between membrane lipids and fermentation capacity. Biotechnol. Bioeng. 108 (2011), 12–21.
    • (2011) Biotechnol. Bioeng. , vol.108 , pp. 12-21
    • Xia, J.1    Jones, A.D.2    Lau, M.W.3    Yuan, Y.J.4    Dale, B.E.5    Balan, V.6
  • 28
    • 67849106535 scopus 로고    scopus 로고
    • MetaboAnalyst: a web server for metabolomic data analysis and interpretation
    • Xia, J., Psychogios, N., Young, N., Wishart, D.S., MetaboAnalyst: a web server for metabolomic data analysis and interpretation. Nucleic Acids Res. 37 (2009), W652–W660.
    • (2009) Nucleic Acids Res. , vol.37 , pp. W652-W660
    • Xia, J.1    Psychogios, N.2    Young, N.3    Wishart, D.S.4
  • 29
    • 84863930599 scopus 로고    scopus 로고
    • Integrated phospholipidomics and transcriptomics analysis of Saccharomyces cerevisiae with enhanced tolerance to a mixture of acetic acid, furfural, and phenol
    • Yang, J., Ding, M.Z., Li, B.Z., Liu, Z.L., Wang, X., Yuan, Y.J., Integrated phospholipidomics and transcriptomics analysis of Saccharomyces cerevisiae with enhanced tolerance to a mixture of acetic acid, furfural, and phenol. OMICS 16 (2012), 374–386.
    • (2012) OMICS , vol.16 , pp. 374-386
    • Yang, J.1    Ding, M.Z.2    Li, B.Z.3    Liu, Z.L.4    Wang, X.5    Yuan, Y.J.6
  • 30
    • 33845886949 scopus 로고    scopus 로고
    • On the lag phase and initial decline of microbial growth curves
    • Yates, G.T., Smotzer, T., On the lag phase and initial decline of microbial growth curves. J. Theor. Biol. 244 (2007), 511–517.
    • (2007) J. Theor. Biol. , vol.244 , pp. 511-517
    • Yates, G.T.1    Smotzer, T.2
  • 31
    • 84860496830 scopus 로고    scopus 로고
    • Metabolic profiling of a Rhizopus oryzae fumaric acid production mutant generated by femtosecond laser irradiation
    • Yu, S., Huang, D., Wen, J., Li, S., Chen, Y., Jia, X., Metabolic profiling of a Rhizopus oryzae fumaric acid production mutant generated by femtosecond laser irradiation. Bioresour. Technol. 114 (2012), 610–615.
    • (2012) Bioresour. Technol. , vol.114 , pp. 610-615
    • Yu, S.1    Huang, D.2    Wen, J.3    Li, S.4    Chen, Y.5    Jia, X.6
  • 32
    • 84951118600 scopus 로고    scopus 로고
    • Impacts of lignocellulose-derived inhibitors on L-lactic acid fermentation by Rhizopus oryzae
    • Zhang, L., Li, X., Yong, Q., Yang, S.T., Ouyang, J., Yu, S., Impacts of lignocellulose-derived inhibitors on L-lactic acid fermentation by Rhizopus oryzae. Bioresour. Technol. 203 (2016), 173–180.
    • (2016) Bioresour. Technol. , vol.203 , pp. 173-180
    • Zhang, L.1    Li, X.2    Yong, Q.3    Yang, S.T.4    Ouyang, J.5    Yu, S.6
  • 33
    • 44449167975 scopus 로고    scopus 로고
    • Role of phosphatidylglycerols in the stability of bacterial membranes
    • Zhao, W., Róg, T., Gurtovenko, A.A., Vattulainen, I., Karttunen, M., Role of phosphatidylglycerols in the stability of bacterial membranes. Biochimie 90 (2008), 930–938.
    • (2008) Biochimie , vol.90 , pp. 930-938
    • Zhao, W.1    Róg, T.2    Gurtovenko, A.A.3    Vattulainen, I.4    Karttunen, M.5
  • 34
    • 80052709625 scopus 로고    scopus 로고
    • Optimization of fumaric acid production by Rhizopus delemar based on the morphology formation
    • Zhou, Z., Du, G., Hua, Z., Zhou, J., Chen, J., Optimization of fumaric acid production by Rhizopus delemar based on the morphology formation. Bioresour. Technol. 102 (2011), 9345–9349.
    • (2011) Bioresour. Technol. , vol.102 , pp. 9345-9349
    • Zhou, Z.1    Du, G.2    Hua, Z.3    Zhou, J.4    Chen, J.5


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