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Volumn 2014, Issue , 2014, Pages

Egas: A collaborative and interactive document curation platform

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EID: 84987673679     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bau048     Document Type: Article
Times cited : (20)

References (42)
  • 1
    • 10644284038 scopus 로고    scopus 로고
    • Enhancing a biomedical information extraction system with dictionary mining and context disambiguation
    • Mukherjea, S., Subramaniam, L.V., Chanda, G. et al. (2004) Enhancing a biomedical information extraction system with dictionary mining and context disambiguation. IBM J. Res. Dev., 48, 693-701.
    • (2004) IBM J. Res. Dev. , vol.48 , pp. 693-701
    • Mukherjea, S.1    Subramaniam, L.V.2    Chanda, G.3
  • 2
    • 33947304181 scopus 로고    scopus 로고
    • Overview of BioCreAtIvE: Critical assessment of information extraction for biology
    • Hirschman, L., Yeh, A., Blaschke, C. et al. (2005) Overview of BioCreAtIvE: critical assessment of information extraction for biology. BMC Bioinformatics, 6 (Suppl 1), S1.
    • (2005) BMC Bioinformatics , vol.6 , pp. S1
    • Hirschman, L.1    Yeh, A.2    Blaschke, C.3
  • 3
    • 34547844156 scopus 로고    scopus 로고
    • Manual curation is not sufficient for annotation of genomic databases
    • Baumgartner, W.A. Jr, Cohen, K.B., Fox, L.M. et al. (2007) Manual curation is not sufficient for annotation of genomic databases. Bioinformatics, 23, i41-i48.
    • (2007) Bioinformatics , vol.23 , pp. i41-i48
    • Baumgartner, W.A.1    Cohen, K.B.2    Fox, L.M.3
  • 4
    • 84865060319 scopus 로고    scopus 로고
    • A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools
    • Verspoor, K., Cohen, K.B., Lanfranchi, A. et al. (2012) A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. BMC Bioinformatics, 13, 207.
    • (2012) BMC Bioinformatics , vol.13 , pp. 207
    • Verspoor, K.1    Cohen, K.B.2    Lanfranchi, A.3
  • 5
    • 84884469671 scopus 로고    scopus 로고
    • A modular framework for biomedical concept recognition
    • Campos, D., Matos, S. and Oliveira J.L. (2013) A modular framework for biomedical concept recognition. BMC Bioinformatics, 14, 281.
    • (2013) BMC Bioinformatics , vol.14 , pp. 281
    • Campos, D.1    Matos, S.2    Oliveira, J.L.3
  • 6
    • 78651423600 scopus 로고    scopus 로고
    • A hybrid approach to extract protein-protein interactions
    • Bui, Q.C., Katrenko, S. and Sloot, P.M.A. (2011) A hybrid approach to extract protein-protein interactions. Bioinformatics, 27, 259-265.
    • (2011) Bioinformatics , vol.27 , pp. 259-265
    • Bui, Q.C.1    Katrenko, S.2    Sloot, P.M.A.3
  • 9
    • 40549106856 scopus 로고    scopus 로고
    • Assisted curation: Does text mining really help?
    • Alex, B., Grover, C., Haddow, B. et al. (2008) Assisted curation: does text mining really help? Pac. Symp. Biocomput., 2008, 556-567.
    • (2008) Pac. Symp. Biocomput. , vol.2008 , pp. 556-567
    • Alex, B.1    Grover, C.2    Haddow, B.3
  • 10
    • 42549103568 scopus 로고    scopus 로고
    • Natural language processing in aid of FlyBase curators
    • Karamanis, N., Seal, R., Lewin, I. et al. (2008) Natural language processing in aid of FlyBase curators. BMC Bioinformatics, 9, 193.
    • (2008) BMC Bioinformatics , vol.9 , pp. 193
    • Karamanis, N.1    Seal, R.2    Lewin, I.3
  • 12
    • 59549104759 scopus 로고    scopus 로고
    • Better bio-informatics through usability analysis
    • Bolchini, D., Finkelstein, A., Perrone, V. et al. (2009) Better bio-informatics through usability analysis. Bioinformatics, 25, 406-412.
    • (2009) Bioinformatics , vol.25 , pp. 406-412
    • Bolchini, D.1    Finkelstein, A.2    Perrone, V.3
  • 13
    • 51049088875 scopus 로고    scopus 로고
    • Overview of the protein-protein interaction annotation extraction task of BioCreative II
    • Krallinger, M., Leitner, F., Rodriguez-Penagos, C. et al. (2008) Overview of the protein-protein interaction annotation extraction task of BioCreative II. Genome Biol., 9 (Suppl. 2), S4.
    • (2008) Genome Biol. , vol.9 , pp. S4
    • Krallinger, M.1    Leitner, F.2    Rodriguez-Penagos, C.3
  • 14
    • 80053423937 scopus 로고    scopus 로고
    • The proteinprotein interaction tasks of BioCreative III: Classification/ranking of articles and linking bio-ontology concepts to full text
    • Krallinger, M., Vazquez, M. and Leitner, F. (2011) The proteinprotein interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics, 12 (Suppl. 8), S3.
    • (2011) BMC Bioinformatics , vol.12 , pp. S3
    • Krallinger, M.1    Vazquez, M.2    Leitner, F.3
  • 16
    • 51049088874 scopus 로고    scopus 로고
    • Overview of BioCreative II gene mention recognition
    • Smith, L., Tanabe, L.K., Ando, R.J. et al. (2008) Overview of BioCreative II gene mention recognition. Genome Biol., 9 (Suppl. 2), S2.
    • (2008) Genome Biol. , vol.9 , pp. S2
    • Smith, L.1    Tanabe, L.K.2    Ando, R.J.3
  • 17
    • 41349103793 scopus 로고    scopus 로고
    • Overview of BioCreative II gene normalization
    • Morgan, A.A., Lu, Z., Wang, X. et al. (2008) Overview of BioCreative II gene normalization. Genome Biol., 9 (Suppl. 2), S3.
    • (2008) Genome Biol. , vol.9 , pp. S3
    • Morgan, A.A.1    Lu, Z.2    Wang, X.3
  • 18
    • 85104042765 scopus 로고    scopus 로고
    • Overview of BioNLP'09 shared task on event extraction
    • Association for Computational Linguistics, Boulder, CO
    • Kim, J.D., Ohta, T., Pyysalo, S. et al. (2009) Overview of BioNLP'09 shared task on event extraction. In: BioNLP Shared Task Workshop, 2009. Association for Computational Linguistics, Boulder, CO, pp. 1-9.
    • (2009) BioNLP Shared Task Workshop, 2009 , pp. 1-9
    • Kim, J.D.1    Ohta, T.2    Pyysalo, S.3
  • 19
    • 84901593338 scopus 로고    scopus 로고
    • Overview of BioNLP shared task
    • Association for Computational Linguistics, Portland, OR
    • Kim, J.D., Pyysalo, S., Ohta, T. et al. (2011) Overview of BioNLP shared task. In: BioNLP Shared Task, Workshop 2011. Association for Computational Linguistics, Portland, OR, pp. 1-6.
    • (2011) BioNLP Shared Task, Workshop 2011 , pp. 1-6
    • Kim, J.D.1    Pyysalo, S.2    Ohta, T.3
  • 20
    • 85020352942 scopus 로고    scopus 로고
    • Overview of BioNLP shared task 2013
    • Association for Computational Linguistics Sofia, Bulgaria
    • Nédellec, C., Bossy, R., Kim, J.D. et al. (2013) Overview of BioNLP shared task 2013. In: Proceedings of BioNLP Shared Task 2013 Workshop. Association for Computational Linguistics, Sofia, Bulgaria, pp. 1-7.
    • (2013) Proceedings of BioNLP Shared Task 2013 Workshop , pp. 1-7
    • Nédellec, C.1    Bossy, R.2    Kim, J.D.3
  • 22
    • 84865565208 scopus 로고    scopus 로고
    • MyMiner: A web application for computer-assisted biocuration and text annotation
    • Salgado, D., Krallinger, M., Depaule, M. et al. (2012) MyMiner: a web application for computer-assisted biocuration and text annotation. Bioinformatics, 28, 2285-2287.
    • (2012) Bioinformatics , vol.28 , pp. 2285-2287
    • Salgado, D.1    Krallinger, M.2    Depaule, M.3
  • 23
    • 84862267399 scopus 로고    scopus 로고
    • Argo: An integrative, interactive, text mining-based workbench supporting curation
    • Rak, R., Rowley, A. Black, W. and Ananiadou, S. (2012) Argo: an integrative, interactive, text mining-based workbench supporting curation. Database, 2012, bas010.
    • (2012) Database , vol.2012
    • Rak, R.1    Rowley, A.2    Black, W.3    Ananiadou, S.4
  • 24
    • 84883572716 scopus 로고    scopus 로고
    • PubTator: A web-based text mining tool for assisting biocuration
    • Wei, C.H., Kao, H.Y. and Lu, Z. (2013) PubTator: a web-based text mining tool for assisting biocuration. Nucleic Acids Res., 41, W518-W522.
    • (2013) Nucleic Acids Res. , vol.41 , pp. W518-W522
    • Wei, C.H.1    Kao, H.Y.2    Lu, Z.3
  • 26
    • 84892753494 scopus 로고    scopus 로고
    • BioC: A minimalist approach to interoperability for biomedical text processing
    • Comeau, D.C., Islamaj Doǧan, R., Ciccarese, P. et al. (2013) BioC: a minimalist approach to interoperability for biomedical text processing. Database, 2013, bat064.
    • (2013) Database , vol.2013
    • Comeau, D.C.1    Islamaj Doǧan, R.2    Ciccarese, P.3
  • 28
    • 84880552535 scopus 로고    scopus 로고
    • BeCAS: Biomedical concept recognition services and visualization
    • Nunes, T., Campos, D., Matos, S. et al. (2013) BeCAS: biomedical concept recognition services and visualization. Bioinformatics, 29, 1915-1916.
    • (2013) Bioinformatics , vol.29 , pp. 1915-1916
    • Nunes, T.1    Campos, D.2    Matos, S.3
  • 29
    • 84863516719 scopus 로고    scopus 로고
    • Concept annotation in the CRAFT corpus
    • Bada, M., Eckert, M., Evans, D. et al. (2012) Concept annotation in the CRAFT corpus. BMC Bioinformatics, 13, 161.
    • (2012) BMC Bioinformatics , vol.13 , pp. 161
    • Bada, M.1    Eckert, M.2    Evans, D.3
  • 31
    • 84875575941 scopus 로고    scopus 로고
    • An improved corpus of disease mentions in PubMed citations
    • Association for Computational Linguistics Montréal, Canada
    • Doǧan, R.I. and Lu, Z. (2012) An improved corpus of disease mentions in PubMed citations. In: Workshop on Biomedical Natural Language Processing. Association for Computational Linguistics, Montréal, Canada, pp. 90-99.
    • (2012) Workshop on Biomedical Natural Language Processing , pp. 90-99
    • Doǧan, R.I.1    Lu, Z.2
  • 32
    • 84873744177 scopus 로고    scopus 로고
    • Gimli: Open source and high-performance biomedical name recognition
    • Campos, D., Matos, S. and Oliveira, J.L. (2013) Gimli: open source and high-performance biomedical name recognition. BMC Bioinformatics, 14, 54.
    • (2013) BMC Bioinformatics , vol.14 , pp. 54
    • Campos, D.1    Matos, S.2    Oliveira, J.L.3
  • 33
    • 35948989284 scopus 로고    scopus 로고
    • The OBO foundry: Coordinated evolution of ontologies to support biomedical data integration
    • Smith, B., Ashburner, M., Rosse, C. et al. (2007) The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol., 25, 1251-1255.
    • (2007) Nat. Biotechnol. , vol.25 , pp. 1251-1255
    • Smith, B.1    Ashburner, M.2    Rosse, C.3
  • 34
    • 33751431796 scopus 로고    scopus 로고
    • NCI thesaurus: A semantic model integrating cancer-related clinical and molecular information
    • Sioutos, N., de Coronado, S., Haber, M.W. et al. (2007) NCI Thesaurus: a semantic model integrating cancer-related clinical and molecular information. J. Biomed. Inform., 40, 30-43.
    • (2007) J. Biomed. Inform. , vol.40 , pp. 30-43
    • Sioutos, N.1    De Coronado, S.2    Haber, M.W.3
  • 35
    • 84856562355 scopus 로고    scopus 로고
    • The NCBI taxonomy database
    • Federhen, S. (2012) The NCBI taxonomy database. Nucleic Acids Res., 40, D136-D143.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D136-D143
    • Federhen, S.1
  • 36
    • 78651286167 scopus 로고    scopus 로고
    • The protein ontology: A structured representation of protein forms and complexes
    • Natale, D.A., Arighi, C.N., Barker, W.C. et al. (2011) The Protein Ontology: a structured representation of protein forms and complexes. Nucleic Acids Res., 39, D539-D545.
    • (2011) Nucleic Acids Res. , vol.39 , pp. D539-D545
    • Natale, D.A.1    Arighi, C.N.2    Barker, W.C.3
  • 37
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology
    • The Gene Ontology Consortium
    • Ashburner, M., Ball, C.A., Blake, J.A. et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3
  • 38
    • 38549127678 scopus 로고    scopus 로고
    • ChEBI: A database and ontology for chemical entities of biological interest
    • Degtyarenko, K., De Matos, P., Ennis, M. et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res., 36 (suppl. 1), D344-D350.
    • (2008) Nucleic Acids Res. , vol.36 , pp. D344-D350
    • Degtyarenko, K.1    De Matos, P.2    Ennis, M.3
  • 39
    • 84859699832 scopus 로고    scopus 로고
    • Disease ontology: A backbone for disease semantic integration
    • Schriml, L.M., Arze, C., Nadendla, S. et al. (2012) Disease Ontology: a backbone for disease semantic integration. Nucleic Acids Res., 40, D940-D946.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D940-D946
    • Schriml, L.M.1    Arze, C.2    Nadendla, S.3
  • 41
    • 84855546021 scopus 로고    scopus 로고
    • Classification methods for finding articles describing protein-protein interactions in PubMed
    • Matos, S. and Oliveira, J.L. (2011) Classification methods for finding articles describing protein-protein interactions in PubMed. J. Integr. Bioinform., 8, 178.
    • (2011) J. Integr. Bioinform. , vol.8 , pp. 178
    • Matos, S.1    Oliveira, J.L.2
  • 42
    • 33847608309 scopus 로고    scopus 로고
    • BioInfer: A corpus for information extraction in the biomedical domain
    • Pyysalo, S., Ginter, F., Heimonen, J. et al. (2007) BioInfer: a corpus for information extraction in the biomedical domain. BMC Bioinformatics, 8, 50.
    • (2007) BMC Bioinformatics , vol.8 , pp. 50
    • Pyysalo, S.1    Ginter, F.2    Heimonen, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.