-
1
-
-
2442702846
-
Recognizing names in biomedical texts: a machine learning approach
-
10.1093/bioinformatics/bth060, 14871877
-
Zhou G, Zhang J, Su J, Shen D, Tan C. Recognizing names in biomedical texts: a machine learning approach. Bioinformatics 2004, 20:1178-1190. 10.1093/bioinformatics/bth060, 14871877.
-
(2004)
Bioinformatics
, vol.20
, pp. 1178-1190
-
-
Zhou, G.1
Zhang, J.2
Su, J.3
Shen, D.4
Tan, C.5
-
2
-
-
85101461012
-
Current Methodologies for Biomedical Named Entity Recognition
-
Wiley Online Library, Elloumi M, Zomaya AY
-
Campos D, Matos S, Oliveira JL, Campos D, Matos S, Oliveira JL. Current Methodologies for Biomedical Named Entity Recognition. Biological Knowledge Discovery Handbook: Preprocessing, Mining And Postprocessing Of Biological Data (to appear) 2014, Wiley Online Library, Elloumi M, Zomaya AY.
-
(2014)
Biological Knowledge Discovery Handbook: Preprocessing, Mining And Postprocessing Of Biological Data (to appear)
-
-
Campos, D.1
Matos, S.2
Oliveira, J.L.3
Campos, D.4
Matos, S.5
Oliveira, J.L.6
-
4
-
-
7444236194
-
UIMA: an architectural approach to unstructured information processing in the corporate research environment
-
Ferrucci D, Lally A. UIMA: an architectural approach to unstructured information processing in the corporate research environment. Nat Lang Eng 2004, 10(3-4):327-348.
-
(2004)
Nat Lang Eng
, vol.10
, Issue.3-4
, pp. 327-348
-
-
Ferrucci, D.1
Lally, A.2
-
5
-
-
3142696208
-
GATE, a general architecture for text engineering
-
Cunningham H. GATE, a general architecture for text engineering. Comput Hum 2002, 36:223-254.
-
(2002)
Comput Hum
, vol.36
, pp. 223-254
-
-
Cunningham, H.1
-
6
-
-
67650714409
-
U-Compare: share and compare text mining tools with UIMA
-
10.1093/bioinformatics/btp289, 2712335, 19414535
-
Kano Y, Baumgartner WA, McCrohon L, Ananiadou S, Cohen KB, Hunter L, Tsujii J. U-Compare: share and compare text mining tools with UIMA. Bioinformatics 2009, 25:1997-1998. 10.1093/bioinformatics/btp289, 2712335, 19414535.
-
(2009)
Bioinformatics
, vol.25
, pp. 1997-1998
-
-
Kano, Y.1
Baumgartner, W.A.2
McCrohon, L.3
Ananiadou, S.4
Cohen, K.B.5
Hunter, L.6
Tsujii, J.7
-
7
-
-
62549103974
-
-
Marrakech, Morocco: European Language Resources Association, Proceedings of the LREC Workshop: Towards Enhanced Interoperability for Large HLT Systems
-
Hahn U, Buyko E, Landefeld R, Mühlhausen M, Poprat M, Tomanek K, Wermter J. An overview of JCoRe, the JULIE lab UIMA component repository 2008, 1-8. Marrakech, Morocco: European Language Resources Association, Proceedings of the LREC Workshop: Towards Enhanced Interoperability for Large HLT Systems.
-
(2008)
An overview of JCoRe, the JULIE lab UIMA component repository
, pp. 1-8
-
-
Hahn, U.1
Buyko, E.2
Landefeld, R.3
Mühlhausen, M.4
Poprat, M.5
Tomanek, K.6
Wermter, J.7
-
8
-
-
62949095898
-
-
Philadelphia, PA, USA: Association for Computational Linguistics, Proceedings of the ACL Workshop on Effective tools and methodologies for teaching natural language processing and computational linguistics
-
Loper E, Bird S. NLTK: the Natural Language Toolkit. 1 2002, 63-70. Philadelphia, PA, USA: Association for Computational Linguistics, Proceedings of the ACL Workshop on Effective tools and methodologies for teaching natural language processing and computational linguistics.
-
(2002)
NLTK: the Natural Language Toolkit. 1
, pp. 63-70
-
-
Loper, E.1
Bird, S.2
-
9
-
-
84884708881
-
-
Apache OpenNLP
-
Apache OpenNLP [http://opennlp.apache.org/], Apache OpenNLP.
-
-
-
-
10
-
-
51049088874
-
Overview of BioCreative II gene mention recognition
-
10.1186/gb-2008-9-s2-s2, 2559986, 18834493
-
Smith L, Tanabe LK, Ando RJN, Kuo C-J, Chung I-F, Hsu C-N, Lin Y-S, Klinger R, Friedrich CM, Ganchev K, Torii M, Liu H, Haddow B, Struble CA, Povinelli RJ, Vlachos A, Baumgartner WA, Hunter L, Carpenter B, Tsai RT-H, Dai H-J, Liu F, Chen Y, Sun C, Katrenko S, Adriaans P, Blaschke C, Torres R, Neves M, Nakov P, Divoli A, Maña-lópez M, Mata J, Wilbur WJ. Overview of BioCreative II gene mention recognition. Genome Biol 2008, 9(Suppl 2):S2. 10.1186/gb-2008-9-s2-s2, 2559986, 18834493.
-
(2008)
Genome Biol
, vol.9
, Issue.SUPPL. 2
-
-
Smith, L.1
Tanabe, L.K.2
Ando, R.J.N.3
Kuo, C.-J.4
Chung, I.-F.5
Hsu, C.-N.6
Lin, Y.-S.7
Klinger, R.8
Friedrich, C.M.9
Ganchev, K.10
Torii, M.11
Liu, H.12
Haddow, B.13
Struble, C.A.14
Povinelli, R.J.15
Vlachos, A.16
Baumgartner, W.A.17
Hunter, L.18
Carpenter, B.19
Tsai, R.T.-H.20
Dai, H.-J.21
Liu, F.22
Chen, Y.23
Sun, C.24
Katrenko, S.25
Adriaans, P.26
Blaschke, C.27
Torres, R.28
Neves, M.29
Nakov, P.30
Divoli, A.31
Maña-lópez, M.32
Mata, J.33
Wilbur, W.J.34
more..
-
11
-
-
41349103793
-
Overview of BioCreative II gene normalization
-
10.1186/gb-2008-9-s2-s3, 2559987, 18834494
-
Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu H-H, Torres R, Krauthammer M, Lau WW, Liu H, Hsu C-N, Schuemie M, Cohen KB, Hirschman L. Overview of BioCreative II gene normalization. Genome Biol 2008, 9(Suppl 2):S3. 10.1186/gb-2008-9-s2-s3, 2559987, 18834494.
-
(2008)
Genome Biol
, vol.9
, Issue.SUPPL. 2
-
-
Morgan, A.A.1
Lu, Z.2
Wang, X.3
Cohen, A.M.4
Fluck, J.5
Ruch, P.6
Divoli, A.7
Fundel, K.8
Leaman, R.9
Hakenberg, J.10
Sun, C.11
Liu, H.-H.12
Torres, R.13
Krauthammer, M.14
Lau, W.W.15
Liu, H.16
Hsu, C.-N.17
Schuemie, M.18
Cohen, K.B.19
Hirschman, L.20
more..
-
12
-
-
80052774027
-
The gene normalization task in BioCreative III
-
Lu Z, Kao H-Y, Wei C-H, Huang M, Liu J, Kuo C-J, Hsu C-N, Tsai RT-H, Dai H-J, Okazaki N, Cho H-C, Gerner M, Solt I, Agarwal S, Liu F, Vishnyakova D, Ruch P, Romacker M, Rinaldi F, Bhattacharya S, Srinivasan P, Liu H, Torii M, Matos S, Campos D, Verspoor K, Livingston KM, Wilbur WJ. The gene normalization task in BioCreative III. BMC Bioinforma 2011, 12(Suppl 8):S2.
-
(2011)
BMC Bioinforma
, vol.12
, Issue.SUPPL. 8
-
-
Lu, Z.1
Kao, H.-Y.2
Wei, C.-H.3
Huang, M.4
Liu, J.5
Kuo, C.-J.6
Hsu, C.-N.7
Tsai, R.T.-H.8
Dai, H.-J.9
Okazaki, N.10
Cho, H.-C.11
Gerner, M.12
Solt, I.13
Agarwal, S.14
Liu, F.15
Vishnyakova, D.16
Ruch, P.17
Romacker, M.18
Rinaldi, F.19
Bhattacharya, S.20
Srinivasan, P.21
Liu, H.22
Torii, M.23
Matos, S.24
Campos, D.25
Verspoor, K.26
Livingston, K.M.27
Wilbur, W.J.28
more..
-
13
-
-
16244414494
-
Introduction to the bio-entity recognition task at JNLPBA
-
Geneva, Switzerland: Association for Computational Linguistics
-
Kim JD, Ohta T, Tsuruoka Y, Tateisi Y, Collier N. Introduction to the bio-entity recognition task at JNLPBA. Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications 2004, 70-75. Geneva, Switzerland: Association for Computational Linguistics.
-
(2004)
Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications
, pp. 70-75
-
-
Kim, J.D.1
Ohta, T.2
Tsuruoka, Y.3
Tateisi, Y.4
Collier, N.5
-
14
-
-
84873744177
-
Gimli: open source and high-performance biomedical name recognition
-
Campos D, Matos S, Oliveira J. Gimli: open source and high-performance biomedical name recognition. BMC Bioinforma 2013, 14:54.
-
(2013)
BMC Bioinforma
, vol.14
, pp. 54
-
-
Campos, D.1
Matos, S.2
Oliveira, J.3
-
15
-
-
40549140499
-
-
Big Island of Hawaii, HI, USA: World Scientific Publishing, Pac Symp Biocomput
-
Leaman R, Gonzalez G. BANNER: an executable survey of advances in biomedical named entity recognition 2008, 652-663. Big Island of Hawaii, HI, USA: World Scientific Publishing, Pac Symp Biocomput.
-
(2008)
BANNER: an executable survey of advances in biomedical named entity recognition
, pp. 652-663
-
-
Leaman, R.1
Gonzalez, G.2
-
16
-
-
62549162626
-
High-performance gene name normalization with GeNo
-
10.1093/bioinformatics/btp071, 19188193
-
Wermter J, Tomanek K, Hahn U. High-performance gene name normalization with GeNo. Bioinformatics 2009, 25:815-821. 10.1093/bioinformatics/btp071, 19188193.
-
(2009)
Bioinformatics
, vol.25
, pp. 815-821
-
-
Wermter, J.1
Tomanek, K.2
Hahn, U.3
-
17
-
-
49549120418
-
Inter-species normalization of gene mentions with GNAT
-
10.1093/bioinformatics/btn299, 18689813
-
Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G. Inter-species normalization of gene mentions with GNAT. Bioinformatics 2008, 24:i126-i132. 10.1093/bioinformatics/btn299, 18689813.
-
(2008)
Bioinformatics
, vol.24
-
-
Hakenberg, J.1
Plake, C.2
Leaman, R.3
Schroeder, M.4
Gonzalez, G.5
-
18
-
-
38349118307
-
Text processing through web services: calling Whatizit
-
10.1093/bioinformatics/btm557, 18006544
-
Rebholz-Schuhmann D, Arregui M, Gaudan S, Kirsch H, Jimeno A. Text processing through web services: calling Whatizit. Bioinformatics 2008, 24:296-298. 10.1093/bioinformatics/btm557, 18006544.
-
(2008)
Bioinformatics
, vol.24
, pp. 296-298
-
-
Rebholz-Schuhmann, D.1
Arregui, M.2
Gaudan, S.3
Kirsch, H.4
Jimeno, A.5
-
19
-
-
84885484464
-
-
Cocoa [http://npjoint.com/].
-
Cocoa
-
-
-
20
-
-
84884728573
-
-
Washington, D.C., WA, USA, International Semantic Web Conference, Poster and Demo session
-
Jonquet C, Shah N, Youn C, Callendar C, Storey M, Musen M. NCBO annotator: semantic annotation of biomedical data 2009, Washington, D.C., WA, USA, International Semantic Web Conference, Poster and Demo session.
-
(2009)
NCBO annotator: semantic annotation of biomedical data
-
-
Jonquet, C.1
Shah, N.2
Youn, C.3
Callendar, C.4
Storey, M.5
Musen, M.6
-
21
-
-
0035752429
-
-
Washington, D.C., WA, USA: Journal of the American Medical Informatics Association (JAMIA), Proceedings of the AMIA Annual Symposium
-
Aronson AR. Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program 2001, 17-21. Washington, D.C., WA, USA: Journal of the American Medical Informatics Association (JAMIA), Proceedings of the AMIA Annual Symposium.
-
(2001)
Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program
, pp. 17-21
-
-
Aronson, A.R.1
-
22
-
-
77955287813
-
An overview of MetaMap: historical perspective and recent advances
-
2995713, 20442139
-
Aronson AR, Lang F-M. An overview of MetaMap: historical perspective and recent advances. J Am Med Inform Assoc 2010, 17:229-236. 2995713, 20442139.
-
(2010)
J Am Med Inform Assoc
, vol.17
, pp. 229-236
-
-
Aronson, A.R.1
Lang, F.-M.2
-
24
-
-
84962674256
-
-
Lisbon, Portugal: European Language Resources Association, 4th International Conference on Language Resources and Evaluation
-
Tateisi Y, Tsujii J. Part-of-speech annotation of biology research abstracts 2004, 1267-1270. Lisbon, Portugal: European Language Resources Association, 4th International Conference on Language Resources and Evaluation.
-
(2004)
Part-of-speech annotation of biology research abstracts
, pp. 1267-1270
-
-
Tateisi, Y.1
Tsujii, J.2
-
26
-
-
84884731290
-
-
LingPipe
-
LingPipe [http://alias-i.com/lingpipe/index.html], LingPipe.
-
-
-
-
27
-
-
84865060319
-
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools
-
Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA, Bada M, Palmer M, Hunter LE. A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. BMC Bioinforma 2012, 13:207.
-
(2012)
BMC Bioinforma
, vol.13
, pp. 207
-
-
Verspoor, K.1
Cohen, K.B.2
Lanfranchi, A.3
Warner, C.4
Johnson, H.L.5
Roeder, C.6
Choi, J.D.7
Funk, C.8
Malenkiy, Y.9
Eckert, M.10
Xue, N.11
Baumgartner, W.A.12
Bada, M.13
Palmer, M.14
Hunter, L.E.15
-
28
-
-
80053380720
-
-
Prague, Czech Republic: Association for Computational Linguistics, Eleventh Conference on Computational Natural Language Learning
-
Sagae K. Dependency parsing and domain adaptation with LR models and parser ensembles 2007, 1044-1050. Prague, Czech Republic: Association for Computational Linguistics, Eleventh Conference on Computational Natural Language Learning.
-
(2007)
Dependency parsing and domain adaptation with LR models and parser ensembles
, pp. 1044-1050
-
-
Sagae, K.1
-
29
-
-
77949431037
-
LINNAEUS: a species name identification system for biomedical literature
-
Gerner M, Nenadic G, Bergman CM. LINNAEUS: a species name identification system for biomedical literature. BMC Bioinforma 2010, 11:85.
-
(2010)
BMC Bioinforma
, vol.11
, pp. 85
-
-
Gerner, M.1
Nenadic, G.2
Bergman, C.M.3
-
31
-
-
79952756879
-
Comparing and combining chunkers of biomedical text
-
10.1016/j.jbi.2010.10.005, 21056118
-
Kang N, Van Mulligen EM, Kors JA. Comparing and combining chunkers of biomedical text. J Biomed Inform 2011, 44:354-360. 10.1016/j.jbi.2010.10.005, 21056118.
-
(2011)
J Biomed Inform
, vol.44
, pp. 354-360
-
-
Kang, N.1
Van Mulligen, E.M.2
Kors, J.A.3
-
33
-
-
33947250174
-
GENETAG: a tagged corpus for gene/protein named entity recognition
-
Tanabe L, Xie N, Thom LH, Matten W, Wilbur WJ. GENETAG: a tagged corpus for gene/protein named entity recognition. BMC Bioinforma 2005, 6(Suppl 1):S3.
-
(2005)
BMC Bioinforma
, vol.6
, Issue.SUPPL. 1
-
-
Tanabe, L.1
Xie, N.2
Thom, L.H.3
Matten, W.4
Wilbur, W.J.5
-
34
-
-
0041627757
-
-
Hawaii, HI, USA: World Scientific Publishing, Pac Symp Biocomput
-
Schwartz AS, Hearst MA. A simple algorithm for identifying abbreviation definitions in biomedical text 2003, 451-462. Hawaii, HI, USA: World Scientific Publishing, Pac Symp Biocomput.
-
(2003)
A simple algorithm for identifying abbreviation definitions in biomedical text
, pp. 451-462
-
-
Schwartz, A.S.1
Hearst, M.A.2
-
35
-
-
84884708049
-
-
Fortaleza, Brazil: Intelligent Systems for Molecular Biology (ISMB), Joint BioLINK and Bio-Ontologies SIG Meeting
-
Rebholz-Schuhmann D, Kirsch H, Nenadic G, Rebholz-Schuhmann D, Kirsch H, Nenadic G. IeXML: towards an annotation framework for biomedical semantic types enabling interoperability of text processing modules 2006, Fortaleza, Brazil: Intelligent Systems for Molecular Biology (ISMB), Joint BioLINK and Bio-Ontologies SIG Meeting.
-
(2006)
IeXML: towards an annotation framework for biomedical semantic types enabling interoperability of text processing modules
-
-
Rebholz-Schuhmann, D.1
Kirsch, H.2
Nenadic, G.3
Rebholz-Schuhmann, D.4
Kirsch, H.5
Nenadic, G.6
-
37
-
-
85099019865
-
Introduction to the CoNLL-2003 shared task: Language-independent named entity recognition
-
Edmonton, Canada: Association for Computational Linguistics
-
Tjong Kim Sang EF, De Meulder F. Introduction to the CoNLL-2003 shared task: Language-independent named entity recognition. Proceedings of the seventh conference on Natural language learning at HLT-NAACL 2003, 142-147. Edmonton, Canada: Association for Computational Linguistics.
-
(2003)
Proceedings of the seventh conference on Natural language learning at HLT-NAACL
, pp. 142-147
-
-
Tjong Kim Sang, E.F.1
De Meulder, F.2
-
39
-
-
84994486568
-
-
Avignon, France: European Chapter of the Association for computational Linguistics
-
Stenetorp P, Pyysalo S, Topic G, Ohta T, Ananiadou S, Tsujii J. BRAT: a Web-based Tool for NLP-Assisted Text Annotation 2012, 102. Avignon, France: European Chapter of the Association for computational Linguistics.
-
(2012)
BRAT: a Web-based Tool for NLP-Assisted Text Annotation
, pp. 102
-
-
Stenetorp, P.1
Pyysalo, S.2
Topic, G.3
Ohta, T.4
Ananiadou, S.5
Tsujii, J.6
-
40
-
-
84863516719
-
Concept annotation in the CRAFT corpus
-
Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner WA, Cohen KB, Verspoor K, Blake JA, Hunter LE. Concept annotation in the CRAFT corpus. BMC Bioinforma 2012, 13:161.
-
(2012)
BMC Bioinforma
, vol.13
, pp. 161
-
-
Bada, M.1
Eckert, M.2
Evans, D.3
Garcia, K.4
Shipley, K.5
Sitnikov, D.6
Baumgartner, W.A.7
Cohen, K.B.8
Verspoor, K.9
Blake, J.A.10
Hunter, L.E.11
-
41
-
-
84874255547
-
-
Jeju Island, Korea: Association for Computational Linguistics, Workshop on Detecting Structure in Scholarly Discourse (DSSD)
-
Ohta T, Pyysalo S, Tsujii J, Ananiadou S. Open-domain Anatomical Entity Mention Detection 2012, 27-36. Jeju Island, Korea: Association for Computational Linguistics, Workshop on Detecting Structure in Scholarly Discourse (DSSD).
-
(2012)
Open-domain Anatomical Entity Mention Detection
, pp. 27-36
-
-
Ohta, T.1
Pyysalo, S.2
Tsujii, J.3
Ananiadou, S.4
-
42
-
-
84884709834
-
-
Montréal, Canada: Workshop on Biomedical Natural Language Processing, Association for Computational Linguistics
-
Doǧan RI, Lu Z. An improved corpus of disease mentions in PubMed citations 2012, 90-99. Montréal, Canada: Workshop on Biomedical Natural Language Processing, Association for Computational Linguistics.
-
(2012)
An improved corpus of disease mentions in PubMed citations
, pp. 90-99
-
-
Doǧan, R.I.1
Lu, Z.2
-
43
-
-
80053915290
-
The BioLexicon: a large-scale terminological resource for biomedical text mining
-
Thompson P, McNaught J, Montemagni S, Calzolari N, Del Gratta R, Lee V, Marchi S, Monachini M, Pezik P, Quochi V, Rupp C, Sasaki Y, Venturi G, Rebholz-Schuhmann D, Ananiadou S. The BioLexicon: a large-scale terminological resource for biomedical text mining. BMC Bioinforma 2011, 12:397.
-
(2011)
BMC Bioinforma
, vol.12
, pp. 397
-
-
Thompson, P.1
McNaught, J.2
Montemagni, S.3
Calzolari, N.4
Del Gratta, R.5
Lee, V.6
Marchi, S.7
Monachini, M.8
Pezik, P.9
Quochi, V.10
Rupp, C.11
Sasaki, Y.12
Venturi, G.13
Rebholz-Schuhmann, D.14
Ananiadou, S.15
-
44
-
-
30344472426
-
BioThesaurus: a web-based thesaurus of protein and gene names
-
10.1093/bioinformatics/bti749, 16267085
-
Liu H, Hu ZZ, Zhang J, Wu C. BioThesaurus: a web-based thesaurus of protein and gene names. Bioinformatics 2006, 22:103-105. 10.1093/bioinformatics/bti749, 16267085.
-
(2006)
Bioinformatics
, vol.22
, pp. 103-105
-
-
Liu, H.1
Hu, Z.Z.2
Zhang, J.3
Wu, C.4
-
45
-
-
0345863927
-
The unified medical language system (UMLS): integrating biomedical terminology
-
10.1093/nar/gkh061, 308795, 14681409
-
Bodenreider O. The unified medical language system (UMLS): integrating biomedical terminology. Nucleic acids research 2004, 32:D267. 10.1093/nar/gkh061, 308795, 14681409.
-
(2004)
Nucleic acids research
, vol.32
-
-
Bodenreider, O.1
-
46
-
-
38549127678
-
ChEBI: a database and ontology for chemical entities of biological interest
-
2238832, 17932057
-
Degtyarenko K, De Matos P, Ennis M, Hastings J, Zbinden M, McNaught A, Alcántara R, Darsow M, Guedj M, Ashburner M. ChEBI: a database and ontology for chemical entities of biological interest. Nucleic acids research 2008, 36:D344-D350. 2238832, 17932057.
-
(2008)
Nucleic acids research
, vol.36
-
-
Degtyarenko, K.1
De Matos, P.2
Ennis, M.3
Hastings, J.4
Zbinden, M.5
McNaught, A.6
Alcántara, R.7
Darsow, M.8
Guedj, M.9
Ashburner, M.10
-
47
-
-
0034069495
-
Others: gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556, 3037419, 10802651
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT. Others: gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature genetics 2000, 25:25. 10.1038/75556, 3037419, 10802651.
-
(2000)
Nature genetics
, vol.25
, pp. 25
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
48
-
-
84860473173
-
Harmonization of gene/protein annotations: towards a gold standard MEDLINE
-
10.1093/bioinformatics/bts125, 22419783
-
Campos D, Matos S, Lewin I, Oliveira JL, Rebholz-Schuhmann D. Harmonization of gene/protein annotations: towards a gold standard MEDLINE. Bioinformatics 2012, 28:1253-1261. 10.1093/bioinformatics/bts125, 22419783.
-
(2012)
Bioinformatics
, vol.28
, pp. 1253-1261
-
-
Campos, D.1
Matos, S.2
Lewin, I.3
Oliveira, J.L.4
Rebholz-Schuhmann, D.5
-
49
-
-
84884712085
-
-
Europe PubMed Central
-
Europe PubMed Central [http://europepmc.org/], Europe PubMed Central.
-
-
-
-
50
-
-
16244423656
-
Comparative experiments on learning information extractors for proteins and their interactions
-
10.1016/j.artmed.2004.07.016, 15811782
-
Bunescu R, Ge R, Kate RJ, Marcotte EM, Mooney RJ, Ramani AK, Wong YW. Comparative experiments on learning information extractors for proteins and their interactions. Artif Intell Med 2005, 33:139-155. 10.1016/j.artmed.2004.07.016, 15811782.
-
(2005)
Artif Intell Med
, vol.33
, pp. 139-155
-
-
Bunescu, R.1
Ge, R.2
Kate, R.J.3
Marcotte, E.M.4
Mooney, R.J.5
Ramani, A.K.6
Wong, Y.W.7
-
51
-
-
33847608309
-
BioInfer: a corpus for information extraction in the biomedical domain
-
Pyysalo S, Ginter F, Heimonen J, Bjorne J, Boberg J, Jarvinen J, Salakoski T. BioInfer: a corpus for information extraction in the biomedical domain. BMC Bioinforma 2007, 8:50.
-
(2007)
BMC Bioinforma
, vol.8
, pp. 50
-
-
Pyysalo, S.1
Ginter, F.2
Heimonen, J.3
Bjorne, J.4
Boberg, J.5
Jarvinen, J.6
Salakoski, T.7
-
53
-
-
84884720185
-
-
Washington, D.C., WA, USA: American Medical Informatics Association, Proceedings of the AMIA Annual Symposium
-
Yu H. Towards answering biological questions with experimental evidence: automatically identifying text that summarize image content in full-text articles 2006, 834-838. Washington, D.C., WA, USA: American Medical Informatics Association, Proceedings of the AMIA Annual Symposium.
-
(2006)
Towards answering biological questions with experimental evidence: automatically identifying text that summarize image content in full-text articles
, pp. 834-838
-
-
Yu, H.1
-
54
-
-
44349098675
-
MedEvi: retrieving textual evidence of relations between biomedical concepts from Medline
-
10.1093/bioinformatics/btn117, 2387223, 18400773
-
Kim J-J, Pezik P, Rebholz-Schuhmann D. MedEvi: retrieving textual evidence of relations between biomedical concepts from Medline. Bioinformatics 2008, 24:1410-1412. 10.1093/bioinformatics/btn117, 2387223, 18400773.
-
(2008)
Bioinformatics
, vol.24
, pp. 1410-1412
-
-
Kim, J.-J.1
Pezik, P.2
Rebholz-Schuhmann, D.3
-
55
-
-
80054837348
-
Medie and Info-pubmed: 2010 update
-
Ohta T, Matsuzaki T, Okazaki N, Miwa M, Sætre R, Pyysalo S, Tsujii J. Medie and Info-pubmed: 2010 update. BMC Bioinforma 2010, 11:P7.
-
(2010)
BMC Bioinforma
, vol.11
-
-
Ohta, T.1
Matsuzaki, T.2
Okazaki, N.3
Miwa, M.4
Sætre, R.5
Pyysalo, S.6
Tsujii, J.7
-
56
-
-
84863649693
-
Quertle: the conceptual relationships alternative search engine for pubmed
-
Coppernoll-Blach P. Quertle: the conceptual relationships alternative search engine for pubmed. J Med Libr Assoc 2011, 99:176-177.
-
(2011)
J Med Libr Assoc
, vol.99
, pp. 176-177
-
-
Coppernoll-Blach, P.1
-
57
-
-
77951569837
-
Concept-based query expansion for retrieving gene related publications from MEDLINE
-
Matos S, Arrais JP, Maia-Rodrigues J, Oliveira JL. Concept-based query expansion for retrieving gene related publications from MEDLINE. BMC Bioinforma 2010, 11:212.
-
(2010)
BMC Bioinforma
, vol.11
, pp. 212
-
-
Matos, S.1
Arrais, J.P.2
Maia-Rodrigues, J.3
Oliveira, J.L.4
-
58
-
-
79959437702
-
Discovering and visualizing indirect associations between biomedical concepts
-
10.1093/bioinformatics/btr214, 3117364, 21685059
-
Tsuruoka Y, Miwa M, Hamamoto K, Tsujii J, Ananiadou S. Discovering and visualizing indirect associations between biomedical concepts. Bioinformatics 2011, 27:i111-i119. 10.1093/bioinformatics/btr214, 3117364, 21685059.
-
(2011)
Bioinformatics
, vol.27
-
-
Tsuruoka, Y.1
Miwa, M.2
Hamamoto, K.3
Tsujii, J.4
Ananiadou, S.5
-
59
-
-
84865981409
-
A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions
-
10.1016/j.jbi.2012.04.006, 22564364
-
Hakenberg J, Voronov D, Nguyên VH, Liang S, Anwar S, Lumpkin B, Leaman R, Tari L, Baral C. A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions. J Biomed Inform 2012, 45:842-850. 10.1016/j.jbi.2012.04.006, 22564364.
-
(2012)
J Biomed Inform
, vol.45
, pp. 842-850
-
-
Hakenberg, J.1
Voronov, D.2
Nguyên, V.H.3
Liang, S.4
Anwar, S.5
Lumpkin, B.6
Leaman, R.7
Tari, L.8
Baral, C.9
-
60
-
-
41149175599
-
Literature-based concept profiles for gene annotation: the issue of weighting
-
10.1016/j.ijmedinf.2007.07.004, 17827057
-
Jelier R, Schuemie MJ, Roes P-J, van Mulligen EM, Kors JA. Literature-based concept profiles for gene annotation: the issue of weighting. International journal of medical informatics 2008, 77:354-362. 10.1016/j.ijmedinf.2007.07.004, 17827057.
-
(2008)
International journal of medical informatics
, vol.77
, pp. 354-362
-
-
Jelier, R.1
Schuemie, M.J.2
Roes, P.-J.3
van Mulligen, E.M.4
Kors, J.A.5
-
61
-
-
84880552535
-
BeCAS: biomedical concept recognition services and visualization
-
10.1093/bioinformatics/btt317, 23736528
-
Nunes T, Campos D, Matos S, Oliveira JL. BeCAS: biomedical concept recognition services and visualization. Bioinformatics 2013, 29:1915-1916. 10.1093/bioinformatics/btt317, 23736528.
-
(2013)
Bioinformatics
, vol.29
, pp. 1915-1916
-
-
Nunes, T.1
Campos, D.2
Matos, S.3
Oliveira, J.L.4
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