-
2
-
-
79953183370
-
Named entity recognition for bacterial type IV secretion systems
-
Sophia Ananiadou, Dan Sullivan, William Black, Gina-Anne Levow, Joseph J. Gillespie, Chunhong Mao, Sampo Pyysalo, BalaKrishna Kolluru, Junichi Tsujii, and Bruno Sobral. 2011. Named entity recognition for bacterial type IV secretion systems. PLoS ONE, 6(3):e14780.
-
(2011)
PLoS ONE
, vol.6
, Issue.3
, pp. e14780
-
-
Ananiadou, Sophia1
Sullivan, Dan2
Black, William3
Levow, Gina-Anne4
Gillespie, Joseph J.5
Mao, Chunhong6
Pyysalo, Sampo7
Kolluru, BalaKrishna8
Tsujii, Junichi9
Sobral, Bruno10
-
3
-
-
77954190136
-
Complex event extraction at PubMed scale
-
Jari Björne, Filip Ginter, Sampo Pyysalo, Jun’ichi Tsujii, and Tapio Salakoski. 2010. Complex event extraction at PubMed scale. Bioinformatics, 26(12):i382–390.
-
(2010)
Bioinformatics
, vol.26
, Issue.12
, pp. i382-i390
-
-
Björne, Jari1
Ginter, Filip2
Pyysalo, Sampo3
Tsujii, Jun’ichi4
Salakoski, Tapio5
-
4
-
-
85052498452
-
BioNLP Shared Task 2011 - Bacteria Biotope
-
Portland, Oregon, June. Association for Computational Linguistics
-
Robert Bossy, Julien Jourde, Philippe Bessières, Marteen van de Guchte, and Claire Nédellec. 2011. BioNLP Shared Task 2011 - Bacteria Biotope. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. Association for Computational Linguistics.
-
(2011)
Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task
-
-
Bossy, Robert1
Jourde, Julien2
Bessières, Philippe3
van de Guchte, Marteen4
Nédellec, Claire5
-
5
-
-
85006003503
-
Semeval-2010 task 8: Multi-way classification of semantic relations between pairs of nominals
-
Stroudsburg, PA, USA. Association for Computational Linguistics
-
Iris Hendrickx, Su Nam Kim, Zornitsa Kozareva, Preslav Nakov, Diarmuid Ó. Séaghdha, Sebastian Padó, Marco Pennacchiotti, Lorenza Romano, and Stan Szpakowicz. 2010. Semeval-2010 task 8: Multi-way classification of semantic relations between pairs of nominals. In Proceedings of the 5th International Workshop on Semantic Evaluation, SemEval’10, pages 33–38, Stroudsburg, PA, USA. Association for Computational Linguistics.
-
(2010)
Proceedings of the 5th International Workshop on Semantic Evaluation, SemEval’10
, pp. 33-38
-
-
Hendrickx, Iris1
Kim, Su Nam2
Kozareva, Zornitsa3
Nakov, Preslav4
Séaghdha, Diarmuid Ó.5
Padó, Sebastian6
Pennacchiotti, Marco7
Romano, Lorenza8
Szpakowicz, Stan9
-
7
-
-
84887796935
-
BioNLP Shared Task 2011 - Bacteria Gene Interactions and Renaming
-
Portland, Oregon, June. Association for Computational Linguistics
-
Julien Jourde, Alain-Pierre Manine, Philippe Veber, Karën Fort, Robert Bossy, Erick Alphonse, and Philippe Bessières. 2011. BioNLP Shared Task 2011 - Bacteria Gene Interactions and Renaming. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. Association for Computational Linguistics.
-
(2011)
Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task
-
-
Jourde, Julien1
Manine, Alain-Pierre2
Veber, Philippe3
Fort, Karën4
Bossy, Robert5
Alphonse, Erick6
Bessières, Philippe7
-
8
-
-
40749087717
-
Corpus annotation for mining biomedical events from lterature
-
Jin-Dong Kim, Tomoko Ohta, and Jun’ichi Tsujii. 2008. Corpus annotation for mining biomedical events from lterature. BMC Bioinformatics, 9(1):10.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.1
, pp. 10
-
-
Kim, Jin-Dong1
Ohta, Tomoko2
Tsujii, Jun’ichi3
-
9
-
-
85104042765
-
Overview of BioNLP’09 Shared Task on Event Extraction
-
Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, and Jun’ichi Tsujii. 2009. Overview of BioNLP’09 Shared Task on Event Extraction. In Proceedings of Natural Language Processing in Biomedicine (BioNLP) NAACL 2009 Workshop, pages 1–9.
-
(2009)
Proceedings of Natural Language Processing in Biomedicine (BioNLP) NAACL 2009 Workshop
, pp. 1-9
-
-
Kim, Jin-Dong1
Ohta, Tomoko2
Pyysalo, Sampo3
Kano, Yoshinobu4
Tsujii, Jun’ichi5
-
10
-
-
84987798660
-
Overview of the Genia Event task in BioNLP Shared Task 2011
-
Portland, Oregon, June. Association for Computational Linguistics
-
Jin-Dong Kim, Yue Wang, Toshihisa Takagi, and Akinori Yonezawa. 2011. Overview of the Genia Event task in BioNLP Shared Task 2011. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. Association for Computational Linguistics.
-
(2011)
Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task
-
-
Kim, Jin-Dong1
Wang, Yue2
Takagi, Toshihisa3
Yonezawa, Akinori4
-
11
-
-
71849103383
-
Learning ontological rules to extract multiple relations of genic interactions from text
-
A.P. Manine, E. Alphonse, and Bessières P. 2009. Learning ontological rules to extract multiple relations of genic interactions from text. International Journal of Medical Informatics, 78(12):e31–38.
-
(2009)
International Journal of Medical Informatics
, vol.78
, Issue.12
, pp. e31-e38
-
-
Manine, A.P.1
Alphonse, E.2
Bessières, P.3
-
13
-
-
77951600909
-
Event extraction with complex event classification using rich features
-
February
-
Makoto Miwa, Rune Sætre, Jin-Dong Kim, and Jun’ichi Tsujii. 2010b. Event extraction with complex event classification using rich features. Journal of Bioinformatics and Computational Biology (JBCB), 8(1):131–146, February.
-
(2010)
Journal of Bioinformatics and Computational Biology (JBCB)
, vol.8
, Issue.1
, pp. 131-146
-
-
Miwa, Makoto1
Sætre, Rune2
Kim, Jin-Dong3
Tsujii, Jun’ichi4
-
15
-
-
84910063424
-
Overview of the Protein Coreference task in BioNLP Shared Task 2011
-
Portland, Oregon, June. Association for Computational Linguistics
-
Ngan Nguyen, Jin-Dong Kim, and Jun’ichi Tsujii. 2011. Overview of the Protein Coreference task in BioNLP Shared Task 2011. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. Association for Computational Linguistics.
-
(2011)
Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task
-
-
Nguyen, Ngan1
Kim, Jin-Dong2
Tsujii, Jun’ichi3
-
16
-
-
77958556097
-
A re-evaluation of biomedical named entity-term relations
-
Tomoko Ohta, Sampo Pyysalo, Jin-Dong Kim, and Jun’ichi Tsujii. 2010a. A re-evaluation of biomedical named entity-term relations. Journal of Bioinformatics and Computational Biology (JBCB), 8(5):917–928.
-
(2010)
Journal of Bioinformatics and Computational Biology (JBCB)
, vol.8
, Issue.5
, pp. 917-928
-
-
Ohta, Tomoko1
Pyysalo, Sampo2
Kim, Jin-Dong3
Tsujii, Jun’ichi4
-
17
-
-
84874231679
-
Event extraction for post-translational modifications
-
b pages
-
Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jin-Dong Kim, and Jun’ichi Tsujii. 2010b. Event extraction for post-translational modifications. In Proceedings of BioNLP’10, pages 19–27.
-
(2010)
Proceedings of BioNLP’10
, pp. 19-27
-
-
Ohta, Tomoko1
Pyysalo, Sampo2
Miwa, Makoto3
Kim, Jin-Dong4
Tsujii, Jun’ichi5
-
19
-
-
84949857782
-
Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011
-
Portland, Oregon, June. Association for Computational Linguistics
-
Tomoko Ohta, Sampo Pyysalo, and Jun’ichi Tsujii. 2011. Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. Association for Computational Linguistics.
-
(2011)
Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task
-
-
Ohta, Tomoko1
Pyysalo, Sampo2
Tsujii, Jun’ichi3
-
20
-
-
38549099685
-
PubMeth: a cancer methylation database combining text-mining and expert annotation
-
(suppl 1)
-
Maté Ongenaert, Leander Van Neste, Tim De Meyer, Gerben Menschaert, Sofie Bekaert, and Wim Van Criekinge. 2008. PubMeth: a cancer methylation database combining text-mining and expert annotation. Nucleic Acids Research, 36(suppl 1):D842–846.
-
(2008)
Nucleic Acids Research
, vol.36
, pp. D842-D846
-
-
Ongenaert, Maté1
Van Neste, Leander2
Meyer, Tim De3
Menschaert, Gerben4
Bekaert, Sofie5
Van Criekinge, Wim6
-
21
-
-
83055180631
-
Joint inference for knowledge extraction from biomedical literature
-
Hoifung Poon and Lucy Vanderwende. 2010. Joint inference for knowledge extraction from biomedical literature. In Proceedings of NAACL-HLT’10, pages 813–821.
-
(2010)
Proceedings of NAACL-HLT’10
, pp. 813-821
-
-
Poon, Hoifung1
Vanderwende, Lucy2
-
22
-
-
68649118061
-
Static Relations: a Piece in the Biomedical Information Extraction Puzzle
-
Boulder, Colorado. Association for Computational Linguistics
-
Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim, and Jun’ichi Tsujii. 2009. Static Relations: a Piece in the Biomedical Information Extraction Puzzle. In Proceedings of Natural Language Processing in Biomedicine (BioNLP) NAACL 2009 Workshop, pages 1–9, Boulder, Colorado. Association for Computational Linguistics.
-
(2009)
Proceedings of Natural Language Processing in Biomedicine (BioNLP) NAACL 2009 Workshop
, pp. 1-9
-
-
Pyysalo, Sampo1
Ohta, Tomoko2
Kim, Jin-Dong3
Tsujii, Jun’ichi4
-
23
-
-
85121314584
-
Towards event extraction from full texts on infectious diseases
-
Sampo Pyysalo, Tomoko Ohta, Han-Cheol Cho, Dan Sullivan, Chunhong Mao, Bruno Sobral, Jun’ichi Tsujii, and Sophia Ananiadou. 2010. Towards event extraction from full texts on infectious diseases. In Proceedings of BioNLP’10, pages 132–140.
-
(2010)
Proceedings of BioNLP’10
, pp. 132-140
-
-
Pyysalo, Sampo1
Ohta, Tomoko2
Cho, Han-Cheol3
Sullivan, Dan4
Mao, Chunhong5
Sobral, Bruno6
Tsujii, Jun’ichi7
Ananiadou, Sophia8
-
24
-
-
85119282761
-
Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011
-
a Portland, Oregon, June. Association for Computational Linguistics
-
Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Dan Sullivan, Chunhong Mao, Chunxia Wang, Bruno Sobral, Jun’ichi Tsujii, and Sophia Ananiadou. 2011a. Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. Association for Computational Linguistics.
-
(2011)
Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task
-
-
Pyysalo, Sampo1
Ohta, Tomoko2
Rak, Rafal3
Sullivan, Dan4
Mao, Chunhong5
Wang, Chunxia6
Sobral, Bruno7
Tsujii, Jun’ichi8
Ananiadou, Sophia9
-
25
-
-
85119277127
-
Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011
-
b Portland, Oregon, June. Association for Computational Linguistics
-
Sampo Pyysalo, Tomoko Ohta, and Jun’ichi Tsujii. 2011b. Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. Association for Computational Linguistics.
-
(2011)
Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task
-
-
Pyysalo, Sampo1
Ohta, Tomoko2
Tsujii, Jun’ichi3
-
26
-
-
84863715052
-
BioNLP Shared Task 2011: Supporting Resources
-
Portland, Oregon, June. Association for Computational Linguistics
-
Pontus Stenetorp, Goran Topić, Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim, and Jun’ichi Tsujii. 2011. BioNLP Shared Task 2011: Supporting Resources. In Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. Association for Computational Linguistics.
-
(2011)
Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task
-
-
Stenetorp, Pontus1
Topić, Goran2
Pyysalo, Sampo3
Ohta, Tomoko4
Kim, Jin-Dong5
Tsujii, Jun’ichi6
-
28
-
-
40749162318
-
Syntax Annotation for the GE-NIA corpus
-
Companion pages
-
Yuka Tateisi, Akane Yakushiji, Tomoko Ohta, and Jun’ichi Tsujii. 2005. Syntax Annotation for the GE-NIA corpus. In Proceedings of the IJCNLP 2005, Companion volume, pages 222–227.
-
(2005)
Proceedings of the IJCNLP 2005
, pp. 222-227
-
-
Tateisi, Yuka1
Yakushiji, Akane2
Ohta, Tomoko3
Tsujii, Jun’ichi4
-
29
-
-
79959484585
-
Two strong baselines for the bionlp 2009 event extraction task
-
Andreas Vlachos. 2010. Two strong baselines for the bionlp 2009 event extraction task. In Proceedings of BioNLP’10, pages 1–9.
-
(2010)
Proceedings of BioNLP’10
, pp. 1-9
-
-
Vlachos, Andreas1
-
30
-
-
0037246063
-
The Protein Information Resource
-
Cathy H. Wu, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhangzhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, C.R. Vinayaka, Jian Zhang, and Winona C. Barker. 2003. The Protein Information Resource. Nucleic Acids Research, 31(1):345–347.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 345-347
-
-
Wu, Cathy H.1
Yeh, Lai-Su L.2
Huang, Hongzhan3
Arminski, Leslie4
Castro-Alvear, Jorge5
Chen, Yongxing6
Hu, Zhangzhi7
Kourtesis, Panagiotis8
Ledley, Robert S.9
Suzek, Baris E.10
Vinayaka, C.R.11
Zhang, Jian12
Barker, Winona C.13
-
31
-
-
1242349373
-
Extracting synonymous gene and protein terms from biological literature
-
(suppl 1)
-
H. Yu and E. Agichtein. 2003. Extracting synonymous gene and protein terms from biological literature. Bioinformatics, 19(suppl 1):i340.
-
(2003)
Bioinformatics
, vol.19
, pp. i340
-
-
Yu, H.1
Agichtein, E.2
|