메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

Corrigendum: HIPSTR and thousands of lncRNAs are heterogeneously expressed in human embryos, primordial germ cells and stable cell lines (Scientific Reports (2016) 6 (32753) DOI: 10.1038/srep32753);HIPSTR and thousands of lncRNAs are heterogeneously expressed in human embryos, primordial germ cells and stable cell lines

Author keywords

[No Author keywords available]

Indexed keywords

LONG UNTRANSLATED RNA; MESSENGER RNA; TFAP2A PROTEIN, HUMAN; TRANSCRIPTION FACTOR AP 2;

EID: 84986626456     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep44632     Document Type: Erratum
Times cited : (31)

References (70)
  • 1
    • 79960911703 scopus 로고    scopus 로고
    • The reality of pervasive transcription
    • discussion e1001102
    • Clark, M. B. et al. The reality of pervasive transcription. PLoS Biol 9, e1000625; discussion e1001102 (2011).
    • (2011) PLoS Biol , vol.9 , pp. e1000625
    • Clark, M.B.1
  • 2
    • 84865757142 scopus 로고    scopus 로고
    • Landscape of transcription in human cells
    • Djebali, S. et al. Landscape of transcription in human cells. Nature 489, 101-108 (2012).
    • (2012) Nature , vol.489 , pp. 101-108
    • Djebali, S.1
  • 3
    • 69949159297 scopus 로고    scopus 로고
    • Pervasive transcription constitutes a new level of eukaryotic genome regulation
    • Berretta, J. & Morillon, A. Pervasive transcription constitutes a new level of eukaryotic genome regulation. EMBO Rep 10, 973-982 (2009).
    • (2009) EMBO Rep , vol.10 , pp. 973-982
    • Berretta, J.1    Morillon, A.2
  • 4
    • 84924063355 scopus 로고    scopus 로고
    • The landscape of long noncoding RNAs in the human transcriptome
    • Iyer, M. K. et al. The landscape of long noncoding RNAs in the human transcriptome. Nat Genet 47, 199-208 (2015).
    • (2015) Nat Genet , vol.47 , pp. 199-208
    • Iyer, M.K.1
  • 5
    • 84949952099 scopus 로고    scopus 로고
    • Unique features of long non-coding RNA biogenesis and function
    • Quinn, J. J. & Chang, H. Y. Unique features of long non-coding RNA biogenesis and function. Nat Rev Genet 17, 47-62 (2015).
    • (2015) Nat Rev Genet , vol.17 , pp. 47-62
    • Quinn, J.J.1    Chang, H.Y.2
  • 6
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili, M. N. et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 25, 1915-1927 (2011).
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1
  • 7
    • 84883743509 scopus 로고    scopus 로고
    • Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
    • Yan, L. et al. Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells. Nat Struct Mol Biol 20, 1131-1139 (2013).
    • (2013) Nat Struct Mol Biol , vol.20 , pp. 1131-1139
    • Yan, L.1
  • 8
    • 84963544829 scopus 로고    scopus 로고
    • Single-cell analysis of long non-coding RNAs in the developing human neocortex
    • Liu, S. J. et al. Single-cell analysis of long non-coding RNAs in the developing human neocortex. Genome biology 17, 67 (2016).
    • (2016) Genome Biology , vol.17 , pp. 67
    • Liu, S.J.1
  • 9
    • 70449707787 scopus 로고    scopus 로고
    • Pervasive transcription of the eukaryotic genome: Functional indices and conceptual implications
    • Dinger, M. E., Amaral, P. P., Mercer, T. R. & Mattick, J. S. Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications. Brief Funct Genomic Proteomic 8, 407-423 (2009).
    • (2009) Brief Funct Genomic Proteomic , vol.8 , pp. 407-423
    • Dinger, M.E.1    Amaral, P.P.2    Mercer, T.R.3    Mattick, J.S.4
  • 10
    • 84878997106 scopus 로고    scopus 로고
    • Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
    • Shalek, A. K. et al. Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells. Nature 498, 236-240 (2013).
    • (2013) Nature , vol.498 , pp. 236-240
    • Shalek, A.K.1
  • 11
    • 84939171986 scopus 로고    scopus 로고
    • Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
    • Cabili, M. N. et al. Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution. Genome biology 16, 20 (2015).
    • (2015) Genome Biology , vol.16 , pp. 20
    • Cabili, M.N.1
  • 12
    • 34250189924 scopus 로고    scopus 로고
    • Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription
    • Nakaya, H. I. et al. Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. Genome biology 8, R43 (2007).
    • (2007) Genome Biology , vol.8 , pp. R43
    • Nakaya, H.I.1
  • 13
    • 81055150443 scopus 로고    scopus 로고
    • Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer
    • Tahira, A. C. et al. Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer. Mol Cancer 10, 141 (2011).
    • (2011) Mol Cancer , vol.10 , pp. 141
    • Tahira, A.C.1
  • 14
    • 84887512740 scopus 로고    scopus 로고
    • Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: Emerging functional associations
    • Fachel, A. A. et al. Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: emerging functional associations. Mol Cancer 12, 140 (2013).
    • (2013) Mol Cancer , vol.12 , pp. 140
    • Fachel, A.A.1
  • 15
    • 84944447194 scopus 로고    scopus 로고
    • Global analysis of biogenesis, stability and sub-cellular localization of lncRNAs mapping to intragenic regions of the human genome
    • Ayupe, A. C. et al. Global analysis of biogenesis, stability and sub-cellular localization of lncRNAs mapping to intragenic regions of the human genome. RNA Biol 12, 877-892 (2015).
    • (2015) RNA Biol , vol.12 , pp. 877-892
    • Ayupe, A.C.1
  • 16
    • 33847193479 scopus 로고    scopus 로고
    • Androgen responsive intronic non-coding RNAs
    • Louro, R. et al. Androgen responsive intronic non-coding RNAs. BMC Biol 5, 4 (2007).
    • (2007) BMC Biol , vol.5 , pp. 4
    • Louro, R.1
  • 18
    • 84884618929 scopus 로고    scopus 로고
    • The intronic long noncoding RNA ANRASSF1 recruits PRC2 to the RASSF1A promoter, reducing the expression of RASSF1A and increasing cell proliferation
    • Beckedorff, F. C. et al. The intronic long noncoding RNA ANRASSF1 recruits PRC2 to the RASSF1A promoter, reducing the expression of RASSF1A and increasing cell proliferation. PLoS Genet 9, e1003705 (2013).
    • (2013) PLoS Genet , vol.9 , pp. e1003705
    • Beckedorff, F.C.1
  • 19
    • 84863861287 scopus 로고    scopus 로고
    • Regulation of chromatin structure by long noncoding RNAs: Focus on natural antisense transcripts
    • Magistri, M., Faghihi, M. A., St Laurent, G. 3rd & Wahlestedt, C. Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts. Trends Genet 28, 389-396 (2012).
    • (2012) Trends Genet , vol.28 , pp. 389-396
    • Magistri, M.1    Faghihi, M.A.2    St Laurent, G.3    Wahlestedt, C.4
  • 20
    • 34147120555 scopus 로고    scopus 로고
    • Activator protein-2 in carcinogenesis with a special reference to breast cancer - A mini review
    • Pellikainen, J. M. & Kosma, V. M. Activator protein-2 in carcinogenesis with a special reference to breast cancer-a mini review. Int J Cancer 120, 2061-2067 (2007).
    • (2007) Int J Cancer , vol.120 , pp. 2061-2067
    • Pellikainen, J.M.1    Kosma, V.M.2
  • 21
    • 0029932525 scopus 로고    scopus 로고
    • Neural tube, skeletal and body wall defects in mice lacking transcription factor AP-2
    • Zhang, J. et al. Neural tube, skeletal and body wall defects in mice lacking transcription factor AP-2. Nature 381, 238-241 (1996).
    • (1996) Nature , vol.381 , pp. 238-241
    • Zhang, J.1
  • 22
    • 0029932086 scopus 로고    scopus 로고
    • Transcription factor AP-2 essential for cranial closure and craniofacial development
    • Schorle, H., Meier, P., Buchert, M., Jaenisch, R. & Mitchell, P. J. Transcription factor AP-2 essential for cranial closure and craniofacial development. Nature 381, 235-238 (1996).
    • (1996) Nature , vol.381 , pp. 235-238
    • Schorle, H.1    Meier, P.2    Buchert, M.3    Jaenisch, R.4    Mitchell, P.J.5
  • 23
    • 84868484735 scopus 로고    scopus 로고
    • Epigenomic annotation of enhancers predicts transcriptional regulators of human neural crest
    • Rada-Iglesias, A. et al. Epigenomic annotation of enhancers predicts transcriptional regulators of human neural crest. Cell Stem Cell 11, 633-648 (2012).
    • (2012) Cell Stem Cell , vol.11 , pp. 633-648
    • Rada-Iglesias, A.1
  • 24
    • 84948457844 scopus 로고    scopus 로고
    • Enhancer divergence and cis-regulatory evolution in the human and chimp neural crest
    • Prescott, S. L. et al. Enhancer Divergence and cis-Regulatory Evolution in the Human and Chimp Neural Crest. Cell 163, 68-83 (2015).
    • (2015) Cell , vol.163 , pp. 68-83
    • Prescott, S.L.1
  • 25
    • 84856946301 scopus 로고    scopus 로고
    • Comparative transcriptome analysis of human trophectoderm and embryonic stem cell-derived trophoblasts reveal key participants in early implantation
    • Aghajanova, L. et al. Comparative transcriptome analysis of human trophectoderm and embryonic stem cell-derived trophoblasts reveal key participants in early implantation. Biol Reprod 86, 1-21 (2012).
    • (2012) Biol Reprod , vol.86 , pp. 1-21
    • Aghajanova, L.1
  • 26
    • 4243066446 scopus 로고    scopus 로고
    • Critical role for transcription factor AP-2alpha in human trophoblast differentiation
    • Cheng, Y. H. et al. Critical role for transcription factor AP-2alpha in human trophoblast differentiation. Physiol Genomics 18, 99-107 (2004).
    • (2004) Physiol Genomics , vol.18 , pp. 99-107
    • Cheng, Y.H.1
  • 27
    • 81855217387 scopus 로고    scopus 로고
    • Reversal of epigenetic silencing of AP-2alpha results in increased zinc uptake in DU-145 and LNCaP prostate cancer cells
    • Makhov, P. B. et al. Reversal of epigenetic silencing of AP-2alpha results in increased zinc uptake in DU-145 and LNCaP prostate cancer cells. Carcinogenesis 32, 1773-1781 (2011).
    • (2011) Carcinogenesis , vol.32 , pp. 1773-1781
    • Makhov, P.B.1
  • 28
    • 1642515774 scopus 로고    scopus 로고
    • Activator protein 2alpha inhibits tumorigenicity and represses vascular endothelial growth factor transcription in prostate cancer cells
    • Ruiz, M. et al. Activator protein 2alpha inhibits tumorigenicity and represses vascular endothelial growth factor transcription in prostate cancer cells. Cancer Res 64, 631-638 (2004).
    • (2004) Cancer Res , vol.64 , pp. 631-638
    • Ruiz, M.1
  • 29
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • The ENCODE Project Consortium
    • The ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489, 57-74 (2012).
    • (2012) Nature , vol.489 , pp. 57-74
  • 30
    • 84890559595 scopus 로고    scopus 로고
    • Long non-coding RNAs: New players in cell differentiation and development
    • Fatica, A. & Bozzoni, I. Long non-coding RNAs: new players in cell differentiation and development. Nat Rev Genet 15, 7-21 (2014).
    • (2014) Nat Rev Genet , vol.15 , pp. 7-21
    • Fatica, A.1    Bozzoni, I.2
  • 31
    • 34547582418 scopus 로고    scopus 로고
    • CPC: Assess the protein-coding potential of transcripts using sequence features and support vector machine
    • Kong, L. et al. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res 35, W345-349 (2007).
    • (2007) Nucleic Acids Res , vol.35 , pp. W345-W349
    • Kong, L.1
  • 32
    • 84876020023 scopus 로고    scopus 로고
    • CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model
    • Wang, L. et al. CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model. Nucleic Acids Res 41, e74 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. e74
    • Wang, L.1
  • 34
    • 30044434769 scopus 로고    scopus 로고
    • Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
    • Ravasi, T. et al. Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Res 16, 11-19 (2006).
    • (2006) Genome Res , vol.16 , pp. 11-19
    • Ravasi, T.1
  • 35
    • 84905455429 scopus 로고    scopus 로고
    • 8.2% of the Human genome is constrained: Variation in rates of turnover across functional element classes in the human lineage
    • Rands, C. M., Meader, S., Ponting, C. P. & Lunter, G. 8.2% of the Human genome is constrained: variation in rates of turnover across functional element classes in the human lineage. PLoS Genet 10, e1004525 (2014).
    • (2014) PLoS Genet , vol.10 , pp. e1004525
    • Rands, C.M.1    Meader, S.2    Ponting, C.P.3    Lunter, G.4
  • 36
    • 84921908289 scopus 로고    scopus 로고
    • Volatile evolution of long noncoding RNA repertoires: Mechanisms and biological implications
    • Kapusta, A. & Feschotte, C. Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications. Trends Genet 30, 439-452 (2014).
    • (2014) Trends Genet , vol.30 , pp. 439-452
    • Kapusta, A.1    Feschotte, C.2
  • 37
    • 84879987789 scopus 로고    scopus 로고
    • LincRNAs: Genomics, evolution, and mechanisms
    • Ulitsky, I. & Bartel, D. P. lincRNAs: genomics, evolution, and mechanisms. Cell 154, 26-46 (2013).
    • (2013) Cell , vol.154 , pp. 26-46
    • Ulitsky, I.1    Bartel, D.P.2
  • 38
    • 84895908120 scopus 로고    scopus 로고
    • The evolution of lncRNA repertoires and expression patterns in tetrapods
    • Necsulea, A. et al. The evolution of lncRNA repertoires and expression patterns in tetrapods. Nature 505, 635-640 (2014).
    • (2014) Nature , vol.505 , pp. 635-640
    • Necsulea, A.1
  • 39
    • 84888232130 scopus 로고    scopus 로고
    • Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs
    • Marques, A. C. et al. Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs. Genome biology 14, R131 (2013).
    • (2013) Genome Biology , vol.14 , pp. R131
    • Marques, A.C.1
  • 40
    • 1342268289 scopus 로고    scopus 로고
    • Histone H3 lysine 4 methylation patterns in higher eukaryotic genes
    • Schneider, R. et al. Histone H3 lysine 4 methylation patterns in higher eukaryotic genes. Nat Cell Biol 6, 73-77 (2004).
    • (2004) Nat Cell Biol , vol.6 , pp. 73-77
    • Schneider, R.1
  • 41
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • Barski, A. et al. High-resolution profiling of histone methylations in the human genome. Cell 129, 823-837 (2007).
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1
  • 42
    • 84895511915 scopus 로고    scopus 로고
    • Principles of nucleation of H3K27 methylation during embryonic development
    • van Heeringen, S. J. et al. Principles of nucleation of H3K27 methylation during embryonic development. Genome Res 24, 401-410 (2014).
    • (2014) Genome Res , vol.24 , pp. 401-410
    • Van Heeringen, S.J.1
  • 43
    • 84876070120 scopus 로고    scopus 로고
    • An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
    • Li, X. Z. et al. An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes. Mol Cell 50, 67-81 (2013).
    • (2013) Mol Cell , vol.50 , pp. 67-81
    • Li, X.Z.1
  • 44
    • 84922295278 scopus 로고    scopus 로고
    • Enhancer evolution across 20 mammalian species
    • Villar, D. et al. Enhancer evolution across 20 mammalian species. Cell 160, 554-566 (2015).
    • (2015) Cell , vol.160 , pp. 554-566
    • Villar, D.1
  • 45
    • 84893693823 scopus 로고    scopus 로고
    • Canonical nucleosome organization at promoters forms during genome activation
    • Zhang, Y. et al. Canonical nucleosome organization at promoters forms during genome activation. Genome Res 24, 260-266 (2014).
    • (2014) Genome Res , vol.24 , pp. 260-266
    • Zhang, Y.1
  • 46
    • 77951912210 scopus 로고    scopus 로고
    • Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst
    • Guo, G. et al. Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Dev Cell 18, 675-685 (2010).
    • (2010) Dev Cell , vol.18 , pp. 675-685
    • Guo, G.1
  • 47
    • 0024740707 scopus 로고
    • Regulation of transcription factor AP-2 by the morphogen retinoic acid and by second messengers
    • Luscher, B., Mitchell, P. J., Williams, T. & Tjian, R. Regulation of transcription factor AP-2 by the morphogen retinoic acid and by second messengers. Genes Dev 3, 1507-1517 (1989).
    • (1989) Genes Dev , vol.3 , pp. 1507-1517
    • Luscher, B.1    Mitchell, P.J.2    Williams, T.3    Tjian, R.4
  • 48
    • 84860402089 scopus 로고    scopus 로고
    • Alternative TFAP2A isoforms have distinct activities in breast cancer
    • Berlato, C. et al. Alternative TFAP2A isoforms have distinct activities in breast cancer. Breast Cancer Res 13, R23 (2011).
    • (2011) Breast Cancer Res , vol.13 , pp. R23
    • Berlato, C.1
  • 49
  • 50
    • 84883134780 scopus 로고    scopus 로고
    • Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
    • Xue, Z. et al. Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing. Nature 500, 593-597 (2013).
    • (2013) Nature , vol.500 , pp. 593-597
    • Xue, Z.1
  • 51
    • 84941347016 scopus 로고    scopus 로고
    • Novel PRD-like homeodomain transcription factors and retrotransposon elements in early human development
    • Tohonen, V. et al. Novel PRD-like homeodomain transcription factors and retrotransposon elements in early human development. Nat Commun 6, 8207 (2015).
    • (2015) Nat Commun , vol.6 , pp. 8207
    • Tohonen, V.1
  • 52
    • 84928227321 scopus 로고    scopus 로고
    • Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing
    • Biase, F. H., Cao, X. & Zhong, S. Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing. Genome Res 24, 1787-1796 (2014).
    • (2014) Genome Res , vol.24 , pp. 1787-1796
    • Biase, F.H.1    Cao, X.2    Zhong, S.3
  • 53
    • 84965189615 scopus 로고    scopus 로고
    • The importance of study design for detecting differentially abundant features in high-throughput experiments
    • Luo, H., Li, J., Chia, B. K., Robson, P. & Nagarajan, N. The importance of study design for detecting differentially abundant features in high-throughput experiments. Genome biology 15, 527 (2014).
    • (2014) Genome Biology , vol.15 , pp. 527
    • Luo, H.1    Li, J.2    Chia, B.K.3    Robson, P.4    Nagarajan, N.5
  • 54
    • 84930613577 scopus 로고    scopus 로고
    • The transcriptome and DNA methylome landscapes of human primordial germ cells
    • Guo, F. et al. The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells. Cell 161, 1437-1452 (2015).
    • (2015) Cell , vol.161 , pp. 1437-1452
    • Guo, F.1
  • 55
    • 84896385370 scopus 로고    scopus 로고
    • An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment
    • Lin, N. et al. An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment. Mol Cell 53, 1005-1019 (2014).
    • (2014) Mol Cell , vol.53 , pp. 1005-1019
    • Lin, N.1
  • 56
    • 84887995915 scopus 로고    scopus 로고
    • Gene regulation by antisense transcription
    • Pelechano, V. & Steinmetz, L. M. Gene regulation by antisense transcription. Nat Rev Genet 14, 880-893 (2013).
    • (2013) Nat Rev Genet , vol.14 , pp. 880-893
    • Pelechano, V.1    Steinmetz, L.M.2
  • 57
    • 77954572735 scopus 로고    scopus 로고
    • Long noncoding RNA as modular scaffold of histone modification complexes
    • Tsai, M. C. et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science 329, 689-693 (2010).
    • (2010) Science , vol.329 , pp. 689-693
    • Tsai, M.C.1
  • 59
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da, W., Sherman, B. T. & Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4, 44-57 (2009).
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 60
    • 84941024299 scopus 로고    scopus 로고
    • Nuclear fractionation reveals thousands of chromatin-tethered noncoding RNAs adjacent to active genes
    • Werner, M. S. & Ruthenburg, A. J. Nuclear Fractionation Reveals Thousands of Chromatin-Tethered Noncoding RNAs Adjacent to Active Genes. Cell Rep 12, 1089-1098 (2015).
    • (2015) Cell Rep , vol.12 , pp. 1089-1098
    • Werner, M.S.1    Ruthenburg, A.J.2
  • 61
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina sequence data
    • Bolger, A. M., Lohse, M. & Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114-2120 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 62
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim, D. et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome biology 14, R36 (2013).
    • (2013) Genome Biology , vol.14 , pp. R36
    • Kim, D.1
  • 63
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat Methods 9, 357-359 (2012).
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 64
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A. R. & Hall, I. M. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 65
    • 77955895425 scopus 로고    scopus 로고
    • BigWig and BigBed: Enabling browsing of large distributed datasets
    • Kent, W. J., Zweig, A. S., Barber, G., Hinrichs, A. S. & Karolchik, D. BigWig and BigBed: enabling browsing of large distributed datasets. Bioinformatics 26, 2204-2207 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 2204-2207
    • Kent, W.J.1    Zweig, A.S.2    Barber, G.3    Hinrichs, A.S.4    Karolchik, D.5
  • 66
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 67
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq - A Python framework to work with high-throughput sequencing data
    • Anders, S., Pyl, P. T. & Huber, W. HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics 31, 166-169 (2015).
    • (2015) Bioinformatics , vol.31 , pp. 166-169
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 68
    • 70450203033 scopus 로고    scopus 로고
    • Mixtools: An R package for analyzing finite mixture models
    • Benaglia, T., Chauveau, D., Hunter, D. R. & Young, D. S. mixtools: An R package for analyzing finite mixture models. J Stat Softw 32, 1-29 (2009).
    • (2009) J Stat Softw , vol.32 , pp. 1-29
    • Benaglia, T.1    Chauveau, D.2    Hunter, D.R.3    Young, D.S.4
  • 69
    • 84905561666 scopus 로고    scopus 로고
    • Long non-coding RNA INXS is a critical mediator of BCL-XS induced apoptosis
    • DeOcesano-Pereira, C. et al. Long non-coding RNA INXS is a critical mediator of BCL-XS induced apoptosis. Nucleic Acids Res 42, 8343-8355 (2014).
    • (2014) Nucleic Acids Res , vol.42 , pp. 8343-8355
    • DeOcesano-Pereira, C.1
  • 70
    • 84911462077 scopus 로고    scopus 로고
    • A comparative encyclopedia of DNA elements in the mouse genome
    • Yue, F. et al. A comparative encyclopedia of DNA elements in the mouse genome. Nature 515, 355-364 (2014).
    • (2014) Nature , vol.515 , pp. 355-364
    • Yue, F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.