-
1
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R.; Mann, M. Mass spectrometry-based proteomics. Nature 2003, 422 (6928), 198-207.
-
(2003)
Nature
, vol.422
, Issue.6928
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
37249014081
-
The biological impact of mass-spectrometry-based proteomics
-
Cravatt, B. F.; Simon, G. M.; Yates, J. R., 3rd. The biological impact of mass-spectrometry-based proteomics. Nature 2007, 450 (7172), 991-1000.
-
(2007)
Nature
, vol.450
, Issue.7172
, pp. 991-1000
-
-
Cravatt, B.F.1
Simon, G.M.2
Yates, J.R.3
-
3
-
-
84871297843
-
Next-generation proteomics: Towards an integrative view of proteome dynamics
-
Altelaar, A. F.; Munoz, J.; Heck, A. J. Next-generation proteomics: towards an integrative view of proteome dynamics. Nat. Rev. Genet. 2013, 14 (1), 35-48.
-
(2013)
Nat. Rev. Genet.
, vol.14
, Issue.1
, pp. 35-48
-
-
Altelaar, A.F.1
Munoz, J.2
Heck, A.J.3
-
4
-
-
79953719716
-
More than 100, 000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS
-
Michalski, A.; Cox, J.; Mann, M. More than 100, 000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS. J. Proteome Res. 2011, 10 (4), 1785-93.
-
(2011)
J. Proteome Res.
, vol.10
, Issue.4
, pp. 1785-1793
-
-
Michalski, A.1
Cox, J.2
Mann, M.3
-
5
-
-
84915774615
-
Rapid and deep proteomes by faster sequencing on a benchtop quadrupole ultra-high-field orbitrap mass spectrometer
-
Kelstrup, C. D.; Jersie-Christensen, R. R.; Batth, T. S.; Arrey, T. N.; Kuehn, A.; Kellmann, M.; Olsen, J. V. Rapid and Deep Proteomes by Faster Sequencing on a Benchtop Quadrupole Ultra-High-Field Orbitrap Mass Spectrometer. J. Proteome Res. 2014, 13, 6187.
-
(2014)
J. Proteome Res.
, vol.13
, pp. 6187
-
-
Kelstrup, C.D.1
Jersie-Christensen, R.R.2
Batth, T.S.3
Arrey, T.N.4
Kuehn, A.5
Kellmann, M.6
Olsen, J.V.7
-
6
-
-
84925881208
-
The Q exactive HF, a benchtop mass spectrometer with a pre-filter, high-performance quadrupole and an ultra-high-field orbitrap analyzer
-
Scheltema, R. A.; Hauschild, J. P.; Lange, O.; Hornburg, D.; Denisov, E.; Damoc, E.; Kuehn, A.; Makarov, A.; Mann, M. The Q Exactive HF, a Benchtop Mass Spectrometer with a Pre-filter, High-performance Quadrupole and an Ultra-high-field Orbitrap Analyzer. Mol. Cell. Proteomics 2014, 13 (12), 3698-708.
-
(2014)
Mol. Cell. Proteomics
, vol.13
, Issue.12
, pp. 3698-3708
-
-
Scheltema, R.A.1
Hauschild, J.P.2
Lange, O.3
Hornburg, D.4
Denisov, E.5
Damoc, E.6
Kuehn, A.7
Makarov, A.8
Mann, M.9
-
7
-
-
63049138916
-
Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures
-
Li, G. Z.; Vissers, J. P.; Silva, J. C.; Golick, D.; Gorenstein, M. V.; Geromanos, S. J. Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures. Proteomics 2009, 9 (6), 1696-719.
-
(2009)
Proteomics
, vol.9
, Issue.6
, pp. 1696-1719
-
-
Li, G.Z.1
Vissers, J.P.2
Silva, J.C.3
Golick, D.4
Gorenstein, M.V.5
Geromanos, S.J.6
-
8
-
-
84861860481
-
Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: A new concept for consistent and accurate proteome analysis
-
Gillet, L. C.; Navarro, P.; Tate, S.; Rost, H.; Selevsek, N.; Reiter, L.; Bonner, R.; Aebersold, R. Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis. Mol. Cell. Proteomics 2012.
-
(2012)
Mol. Cell. Proteomics
-
-
Gillet, L.C.1
Navarro, P.2
Tate, S.3
Rost, H.4
Selevsek, N.5
Reiter, L.6
Bonner, R.7
Aebersold, R.8
-
9
-
-
19944432197
-
Multiplexed protein quantitation in saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P. L.; Huang, Y. N.; Marchese, J. N.; Williamson, B.; Parker, K.; Hattan, S.; Khainovski, N.; Pillai, S.; Dey, S.; Daniels, S.; Purkayastha, S.; Juhasz, P.; Martin, S.; Bartlet-Jones, M.; He, F.; Jacobson, A.; Pappin, D. J. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteomics 2004, 3 (12), 1154-69.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, Issue.12
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
10
-
-
12444345515
-
Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
Thompson, A.; Schafer, J.; Kuhn, K.; Kienle, S.; Schwarz, J.; Schmidt, G.; Neumann, T.; Johnstone, R.; Mohammed, A. K.; Hamon, C. Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem. 2003, 75 (8), 1895-904.
-
(2003)
Anal. Chem.
, vol.75
, Issue.8
, pp. 1895-1904
-
-
Thompson, A.1
Schafer, J.2
Kuhn, K.3
Kienle, S.4
Schwarz, J.5
Schmidt, G.6
Neumann, T.7
Johnstone, R.8
Mohammed, A.K.9
Hamon, C.10
-
11
-
-
33847174067
-
Protein labeling by iTRAQ: A new tool for quantitative mass spectrometry in proteome research
-
Wiese, S.; Reidegeld, K. A.; Meyer, H. E.; Warscheid, B. Protein labeling by iTRAQ: a new tool for quantitative mass spectrometry in proteome research. Proteomics 2007, 7 (3), 340-50.
-
(2007)
Proteomics
, vol.7
, Issue.3
, pp. 340-350
-
-
Wiese, S.1
Reidegeld, K.A.2
Meyer, H.E.3
Warscheid, B.4
-
12
-
-
79959958529
-
Performance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600)
-
Andrews, G. L.; Simons, B. L.; Young, J. B.; Hawkridge, A. M.; Muddiman, D. C. Performance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600) Anal. Chem. 2011, 83 (13), 5442-6.
-
(2011)
Anal. Chem.
, vol.83
, Issue.13
, pp. 5442-5446
-
-
Andrews, G.L.1
Simons, B.L.2
Young, J.B.3
Hawkridge, A.M.4
Muddiman, D.C.5
-
13
-
-
20144388265
-
Quantitative proteomic analysis by accurate mass retention time pairs
-
Silva, J. C.; Denny, R.; Dorschel, C. A.; Gorenstein, M.; Kass, I. J.; Li, G. Z.; McKenna, T.; Nold, M. J.; Richardson, K.; Young, P.; Geromanos, S. Quantitative proteomic analysis by accurate mass retention time pairs. Anal. Chem. 2005, 77 (7), 2187-200.
-
(2005)
Anal. Chem
, vol.77
, Issue.7
, pp. 2187-2200
-
-
Silva, J.C.1
Denny, R.2
Dorschel, C.A.3
Gorenstein, M.4
Kass, I.J.5
Li, G.Z.6
McKenna, T.7
Nold, M.J.8
Richardson, K.9
Young, P.10
Geromanos, S.11
-
14
-
-
33645725976
-
Simultaneous qualitative and quantitative analysis of the Escherichia coli proteome: A sweet tale
-
Silva, J. C.; Denny, R.; Dorschel, C.; Gorenstein, M. V.; Li, G. Z.; Richardson, K.; Wall, D.; Geromanos, S. J. Simultaneous qualitative and quantitative analysis of the Escherichia coli proteome: a sweet tale. Mol. Cell. Proteomics 2006, 5 (4), 589-607.
-
(2006)
Mol. Cell. Proteomics
, vol.5
, Issue.4
, pp. 589-607
-
-
Silva, J.C.1
Denny, R.2
Dorschel, C.3
Gorenstein, M.V.4
Li, G.Z.5
Richardson, K.6
Wall, D.7
Geromanos, S.J.8
-
15
-
-
84895071750
-
Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics
-
Distler, U.; Kuharev, J.; Navarro, P.; Levin, Y.; Schild, H.; Tenzer, S. Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics. Nat. Methods 2014, 11 (2), 167-70.
-
(2014)
Nat. Methods
, vol.11
, Issue.2
, pp. 167-170
-
-
Distler, U.1
Kuharev, J.2
Navarro, P.3
Levin, Y.4
Schild, H.5
Tenzer, S.6
-
16
-
-
84909960220
-
Ion mobility tandem mass spectrometry enhances performance of bottom-up proteomics
-
Helm, D.; Vissers, J. P.; Hughes, C. J.; Hahne, H.; Ruprecht, B.; Pachl, F.; Grzyb, A.; Richardson, K.; Wildgoose, J.; Maier, S. K.; Marx, H.; Wilhelm, M.; Becher, I.; Lemeer, S.; Bantscheff, M.; Langridge, J. I.; Kuster, B. Ion mobility tandem mass spectrometry enhances performance of bottom-up proteomics. Mol. Cell. Proteomics 2014, 13, 3709.
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 3709
-
-
Helm, D.1
Vissers, J.P.2
Hughes, C.J.3
Hahne, H.4
Ruprecht, B.5
Pachl, F.6
Grzyb, A.7
Richardson, K.8
Wildgoose, J.9
Maier, S.K.10
Marx, H.11
Wilhelm, M.12
Becher, I.13
Lemeer, S.14
Bantscheff, M.15
Langridge, J.I.16
Kuster, B.17
-
17
-
-
84936804421
-
The impact II, a very high-resolution quadrupole time-of-flight instrument (QTOF) for deep shotgun proteomics
-
Beck, S.; Michalski, A.; Raether, O.; Lubeck, M.; Kaspar, S.; Goedecke, N.; Baessmann, C.; Hornburg, D.; Meier, F.; Paron, I.; Kulak, N. A.; Cox, J.; Mann, M. The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics. Mol. Cell. Proteomics 2015, 14 (7), 2014-29.
-
(2015)
Mol. Cell. Proteomics
, vol.14
, Issue.7
, pp. 2014-2029
-
-
Beck, S.1
Michalski, A.2
Raether, O.3
Lubeck, M.4
Kaspar, S.5
Goedecke, N.6
Baessmann, C.7
Hornburg, D.8
Meier, F.9
Paron, I.10
Kulak, N.A.11
Cox, J.12
Mann, M.13
-
18
-
-
0032093224
-
Three-dimensional ion mobility/TOFMS analysis of electrosprayed biomolecules
-
Hoaglund, C. S.; Valentine, S. J.; Sporleder, C. R.; Reilly, J. P.; Clemmer, D. E. Three-dimensional ion mobility/TOFMS analysis of electrosprayed biomolecules. Anal. Chem. 1998, 70 (11), 2236-42.
-
(1998)
Anal. Chem.
, vol.70
, Issue.11
, pp. 2236-2242
-
-
Hoaglund, C.S.1
Valentine, S.J.2
Sporleder, C.R.3
Reilly, J.P.4
Clemmer, D.E.5
-
19
-
-
0032238909
-
Gas-phase separations of protease digests
-
Valentine, S. J.; Counterman, A. E.; Hoaglund, C. S.; Reilly, J. P.; Clemmer, D. E. Gas-phase separations of protease digests. J. Am. Soc. Mass Spectrom. 1998, 9 (11), 1213-6.
-
(1998)
J. Am. Soc. Mass Spectrom.
, vol.9
, Issue.11
, pp. 1213-1216
-
-
Valentine, S.J.1
Counterman, A.E.2
Hoaglund, C.S.3
Reilly, J.P.4
Clemmer, D.E.5
-
20
-
-
39149137577
-
Ion mobility-mass spectrometry
-
Kanu, A. B.; Dwivedi, P.; Tam, M.; Matz, L.; Hill, H. H., Jr. Ion mobility-mass spectrometry. J. Mass Spectrom. 2008, 43 (1), 1-22.
-
(2008)
J. Mass Spectrom.
, vol.43
, Issue.1
, pp. 1-22
-
-
Kanu, A.B.1
Dwivedi, P.2
Tam, M.3
Matz, L.4
Hill, H.H.5
-
21
-
-
84961288989
-
Ion mobility-mass spectrometry: Time-dispersive instrumentation
-
May, J. C.; McLean, J. A. Ion mobility-mass spectrometry: time-dispersive instrumentation. Anal. Chem. 2015, 87 (3), 1422-36.
-
(2015)
Anal. Chem.
, vol.87
, Issue.3
, pp. 1422-1436
-
-
May, J.C.1
McLean, J.A.2
-
22
-
-
0035863707
-
Ion trap/ion mobility/quadrupole/time-of-flight mass spectrometry for peptide mixture analysis
-
Hoaglund-Hyzer, C. S.; Clemmer, D. E. Ion trap/ion mobility/quadrupole/time-of-flight mass spectrometry for peptide mixture analysis. Anal. Chem. 2001, 73 (2), 177-84.
-
(2001)
Anal. Chem.
, vol.73
, Issue.2
, pp. 177-184
-
-
Hoaglund-Hyzer, C.S.1
Clemmer, D.E.2
-
23
-
-
84879367507
-
Effects of traveling wave ion mobility separation on data independent acquisition in proteomics studies
-
Shliaha, P. V.; Bond, N. J.; Gatto, L.; Lilley, K. S. Effects of traveling wave ion mobility separation on data independent acquisition in proteomics studies. J. Proteome Res. 2013, 12 (6), 2323-39.
-
(2013)
J. Proteome Res.
, vol.12
, Issue.6
, pp. 2323-2339
-
-
Shliaha, P.V.1
Bond, N.J.2
Gatto, L.3
Lilley, K.S.4
-
24
-
-
84896933849
-
The power of ion mobility-mass spectrometry for structural characterization and the study of conformational dynamics
-
Lanucara, F.; Holman, S. W.; Gray, C. J.; Eyers, C. E. The power of ion mobility-mass spectrometry for structural characterization and the study of conformational dynamics. Nat. Chem. 2014, 6 (4), 281-94.
-
(2014)
Nat. Chem.
, vol.6
, Issue.4
, pp. 281-294
-
-
Lanucara, F.1
Holman, S.W.2
Gray, C.J.3
Eyers, C.E.4
-
25
-
-
84923206701
-
Review on ion mobility spectrometry. Part 1: Current instrumentation
-
Cumeras, R.; Figueras, E.; Davis, C. E.; Baumbach, J. I.; Gracia, I. Review on ion mobility spectrometry. Part 1: current instrumentation. Analyst 2015, 140 (5), 1376-90.
-
(2015)
Analyst
, vol.140
, Issue.5
, pp. 1376-1390
-
-
Cumeras, R.1
Figueras, E.2
Davis, C.E.3
Baumbach, J.I.4
Gracia, I.5
-
26
-
-
84855332805
-
Note: Integration of trapped ion mobility spectrometry with mass spectrometry
-
Fernandez-Lima, F. A.; Kaplan, D. A.; Park, M. A. Note: Integration of trapped ion mobility spectrometry with mass spectrometry. Rev. Sci. Instrum. 2011, 82 (12), 126106.
-
(2011)
Rev. Sci. Instrum.
, vol.82
, Issue.12
-
-
Fernandez-Lima, F.A.1
Kaplan, D.A.2
Park, M.A.3
-
27
-
-
84860389170
-
Gas-phase separation using a trapped ion mobility spectrometer
-
Fernandez-Lima, F.; Kaplan, D. A.; Suetering, J.; Park, M. A. Gas-phase separation using a trapped ion mobility spectrometer. Int. J. Ion Mobility Spectrom. 2011, 14 (2-3), 93.
-
(2011)
Int. J. Ion Mobility Spectrom.
, vol.14
, Issue.2-3
, pp. 93
-
-
Fernandez-Lima, F.1
Kaplan, D.A.2
Suetering, J.3
Park, M.A.4
-
28
-
-
84902841439
-
High resolution trapped ion mobility spectrometery of peptides
-
Silveira, J. A.; Ridgeway, M. E.; Park, M. A. High resolution trapped ion mobility spectrometery of peptides. Anal. Chem. 2014, 86 (12), 5624-7.
-
(2014)
Anal. Chem.
, vol.86
, Issue.12
, pp. 5624-5627
-
-
Silveira, J.A.1
Ridgeway, M.E.2
Park, M.A.3
-
29
-
-
84942604277
-
Microheterogeneity within conformational states of ubiquitin revealed by high resolution trapped ion mobility spectrometry
-
Ridgeway, M. E.; Silveira, J. A.; Meier, J. E.; Park, M. A. Microheterogeneity within conformational states of ubiquitin revealed by high resolution trapped ion mobility spectrometry. Analyst 2015, 140 (20), 6964-72.
-
(2015)
Analyst
, vol.140
, Issue.20
, pp. 6964-6972
-
-
Ridgeway, M.E.1
Silveira, J.A.2
Meier, J.E.3
Park, M.A.4
-
30
-
-
84919904914
-
Fundamentals of trapped ion mobility spectrometry
-
Michelmann, K.; Silveira, J. A.; Ridgeway, M. E.; Park, M. A. Fundamentals of trapped ion mobility spectrometry. J. Am. Soc. Mass Spectrom. 2015, 26 (1), 14-24.
-
(2015)
J. Am. Soc. Mass Spectrom.
, vol.26
, Issue.1
, pp. 14-24
-
-
Michelmann, K.1
Silveira, J.A.2
Ridgeway, M.E.3
Park, M.A.4
-
32
-
-
67649400942
-
A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics
-
Cox, J.; Matic, I.; Hilger, M.; Nagaraj, N.; Selbach, M.; Olsen, J. V.; Mann, M. A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics. Nat. Protoc. 2009, 4 (5), 698-705.
-
(2009)
Nat. Protoc.
, vol.4
, Issue.5
, pp. 698-705
-
-
Cox, J.1
Matic, I.2
Hilger, M.3
Nagaraj, N.4
Selbach, M.5
Olsen, J.V.6
Mann, M.7
-
33
-
-
77955455399
-
Quantifying the impact of chimera MS/MS spectra on peptide identification in large-scale proteomics studies
-
Houel, S.; Abernathy, R.; Renganathan, K.; Meyer-Arendt, K.; Ahn, N. G.; Old, W. M. Quantifying the impact of chimera MS/MS spectra on peptide identification in large-scale proteomics studies. J. Proteome Res. 2010, 9 (8), 4152-60.
-
(2010)
J. Proteome Res.
, vol.9
, Issue.8
, pp. 4152-4160
-
-
Houel, S.1
Abernathy, R.2
Renganathan, K.3
Meyer-Arendt, K.4
Ahn, N.G.5
Old, W.M.6
-
34
-
-
0016520487
-
Theory of plasma chromatography gaseous electrophoresis - Review
-
Revercomb, H. E.; Mason, E. A. Theory of Plasma Chromatography Gaseous Electrophoresis - Review. Anal. Chem. 1975, 47 (7), 970-983.
-
(1975)
Anal. Chem.
, vol.47
, Issue.7
, pp. 970-983
-
-
Revercomb, H.E.1
Mason, E.A.2
-
35
-
-
0034945860
-
Gas-phase separations of complex tryptic peptide mixtures
-
Taraszka, J. A.; Counterman, A. E.; Clemmer, D. E. Gas-phase separations of complex tryptic peptide mixtures. Fresenius' J. Anal. Chem. 2001, 369 (3-4), 234-45.
-
(2001)
Fresenius' J. Anal. Chem.
, vol.369
, Issue.3-4
, pp. 234-245
-
-
Taraszka, J.A.1
Counterman, A.E.2
Clemmer, D.E.3
|