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Volumn 2, Issue 2, 2015, Pages 107-117

Global analysis of gene expression and projection target correlations in the mouse brain

Author keywords

Clustering; Correlation; Feature selection; Gene expression patterns; Projection targets; Visualization

Indexed keywords

AUTOCORRELATION; CORRELATION METHODS; FEATURE EXTRACTION; FLOW VISUALIZATION;

EID: 84984897680     PISSN: 21984018     EISSN: 21984026     Source Type: Journal    
DOI: 10.1007/s40708-015-0014-2     Document Type: Article
Times cited : (13)

References (28)
  • 2
    • 84873097258 scopus 로고    scopus 로고
    • Cortico-cortical projections in mouse visual cortex are functionally target specific
    • Glickfeld LL, Andermann ML, Bonin V, Reid RC (2013) Cortico-cortical projections in mouse visual cortex are functionally target specific. Nat Neurosci 16(2):219–226
    • (2013) Nat Neurosci , vol.16 , Issue.2 , pp. 219-226
    • Glickfeld, L.L.1    Andermann, M.L.2    Bonin, V.3    Reid, R.C.4
  • 3
    • 48249105899 scopus 로고    scopus 로고
    • Using expression profiles of Caenorhabditis elegans neurons to identify genes that mediate synaptic connectivity
    • Baruch L, Itzkovitz S, Golan-Mashiach M, Shapiro E, Segal E (2008) Using expression profiles of Caenorhabditis elegans neurons to identify genes that mediate synaptic connectivity. PLoS Comput Biol 4(7):e1000120
    • (2008) PLoS Comput Biol , vol.4 , Issue.7 , pp. e1000120
    • Baruch, L.1    Itzkovitz, S.2    Golan-Mashiach, M.3    Shapiro, E.4    Segal, E.5
  • 4
    • 33846022377 scopus 로고    scopus 로고
    • Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity
    • Kaufman A, Dror G, Meilijson I, Ruppin E (2006) Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity. PLoS Comput Biol 2(12):e167
    • (2006) PLoS Comput Biol , vol.2 , Issue.12 , pp. e167
    • Kaufman, A.1    Dror, G.2    Meilijson, I.3    Ruppin, E.4
  • 5
    • 33747872850 scopus 로고    scopus 로고
    • Computational inference of the molecular logic for synaptic connectivity in C. elegans
    • Varadan V, Miller DM, Anastassiou D (2006) Computational inference of the molecular logic for synaptic connectivity in C. elegans. Bioinformatics 22(14):e497–e506
    • (2006) Bioinformatics , vol.22 , Issue.14 , pp. e497-e506
    • Varadan, V.1    Miller, D.M.2    Anastassiou, D.3
  • 7
    • 67650925051 scopus 로고    scopus 로고
    • Genomic-anatomic evidence for distinct functional domains in hippocampal field ca1
    • Dong H-W, Swanson LW, Chen L, Fanselow MS, Toga AW (2009) Genomic-anatomic evidence for distinct functional domains in hippocampal field ca1. Proc Natl Acad Sci 106(28):11794–11799
    • (2009) Proc Natl Acad Sci , vol.106 , Issue.28 , pp. 11794-11799
    • Dong, H.-W.1    Swanson, L.W.2    Chen, L.3    Fanselow, M.S.4    Toga, A.W.5
  • 8
    • 79551556509 scopus 로고    scopus 로고
    • Relationships between gene expression and brain wiring in the adult rodent brain
    • French L, Pavlidis P (2011) Relationships between gene expression and brain wiring in the adult rodent brain. PLoS Comput Biol 7(1):e1001049
    • (2011) PLoS Comput Biol , vol.7 , Issue.1 , pp. e1001049
    • French, L.1    Pavlidis, P.2
  • 9
    • 84993968647 scopus 로고    scopus 로고
    • Large-scale analysis of gene expression and connectivity in the rodent brain: insights through data integration
    • French L, Tan PPC, Pavlidis P (2011) Large-scale analysis of gene expression and connectivity in the rodent brain: insights through data integration. Front Neuroinform 5(12):1–11
    • (2011) Front Neuroinform , vol.5 , Issue.12 , pp. 1-11
    • French, L.1    Tan, P.P.C.2    Pavlidis, P.3
  • 10
    • 79958167043 scopus 로고    scopus 로고
    • Gene expression in the rodent brain is associated with its regional connectivity
    • Wolf L, Goldberg C, Manor N, Sharan R, Ruppin E (2011) Gene expression in the rodent brain is associated with its regional connectivity. PLoS Comput Biol 7(5):e1002040
    • (2011) PLoS Comput Biol , vol.7 , Issue.5 , pp. e1002040
    • Wolf, L.1    Goldberg, C.2    Manor, N.3    Sharan, R.4    Ruppin, E.5
  • 11
    • 84884236609 scopus 로고    scopus 로고
    • Integrative analysis of the connectivity and gene expression atlases in the mouse brain
    • Ji S, Fakhry A, Deng H (2014) Integrative analysis of the connectivity and gene expression atlases in the mouse brain. NeuroImage 84(1):245–253
    • (2014) NeuroImage , vol.84 , Issue.1 , pp. 245-253
    • Ji, S.1    Fakhry, A.2    Deng, H.3
  • 12
    • 84903948402 scopus 로고    scopus 로고
    • Spatial patterns of genome-wide expression profiles reflect anatomic and fiber connectivity architecture of healthy human brain
    • Goel P, Kuceyeski A, LoCastro E, Raj A (2014) Spatial patterns of genome-wide expression profiles reflect anatomic and fiber connectivity architecture of healthy human brain. Hum Brain Mapp 35:4204–4218
    • (2014) Hum Brain Mapp , vol.35 , pp. 4204-4218
    • Goel, P.1    Kuceyeski, A.2    LoCastro, E.3    Raj, A.4
  • 14
    • 0024937968 scopus 로고
    • Spatial pattern and ecological analysis
    • Legendre P, Fortin MJ (1989) Spatial pattern and ecological analysis. Vegetatio 80(2):107–138
    • (1989) Vegetatio , vol.80 , Issue.2 , pp. 107-138
    • Legendre, P.1    Fortin, M.J.2
  • 16
    • 33846252240 scopus 로고    scopus 로고
    • Genome-wide atlas of gene expression in the adult mouse brain
    • Lein ES et al (2007) Genome-wide atlas of gene expression in the adult mouse brain. Nature 445(7124):168–176
    • (2007) Nature , vol.445 , Issue.7124 , pp. 168-176
    • Lein, E.S.1
  • 17
    • 84898684536 scopus 로고    scopus 로고
    • A mesoscale connectome of the mouse brain
    • Oh SW et al (2014) A mesoscale connectome of the mouse brain. Nature 508(7495):207–214
    • (2014) Nature , vol.508 , Issue.7495 , pp. 207-214
    • Oh, S.W.1
  • 19
    • 57249084011 scopus 로고    scopus 로고
    • Visualizing high-dimensional data using t-SNE
    • van der Maaten L, Hinton GE (2008) Visualizing high-dimensional data using t-SNE. J Mach Learn Res 9:2579–2605
    • (2008) J Mach Learn Res , vol.9 , pp. 2579-2605
    • van der Maaten, L.1    Hinton, G.E.2
  • 21
    • 84880016436 scopus 로고    scopus 로고
    • Computational genetic neuroanatomy of the developing mouse brain: dimensionality reduction, visualization, and clustering
    • Ji S (2013) Computational genetic neuroanatomy of the developing mouse brain: dimensionality reduction, visualization, and clustering. BMC Bioinform 14:222
    • (2013) BMC Bioinform , vol.14 , pp. 222
    • Ji, S.1
  • 22
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Research 27(2):209–220
    • (1967) Cancer Research , vol.27 , Issue.2 , pp. 209-220
    • Mantel, N.1
  • 23
    • 84963034277 scopus 로고
    • Multiple regression and correlation extensions of the mantel test of matrix correspondence
    • Smouse PE, Long JC, Sokal RR (1986) Multiple regression and correlation extensions of the mantel test of matrix correspondence. Syst Zool 35(4):627–632
    • (1986) Syst Zool , vol.35 , Issue.4 , pp. 627-632
    • Smouse, P.E.1    Long, J.C.2    Sokal, R.R.3
  • 25
    • 74149083446 scopus 로고    scopus 로고
    • Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy
    • Bohland JW et al (2010) Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy. Methods 50(2):105–112
    • (2010) Methods , vol.50 , Issue.2 , pp. 105-112
    • Bohland, J.W.1
  • 27
    • 84894589834 scopus 로고    scopus 로고
    • A probabilistic latent semantic analysis model for co-clustering the mouse brain atlas
    • Ji S, Zhang W, Li R (2013) A probabilistic latent semantic analysis model for co-clustering the mouse brain atlas. IEEE/ACM Trans Comput Biol Bioinform 10(6):1460–1468
    • (2013) IEEE/ACM Trans Comput Biol Bioinform , vol.10 , Issue.6 , pp. 1460-1468
    • Ji, S.1    Zhang, W.2    Li, R.3
  • 28
    • 84874273509 scopus 로고    scopus 로고
    • Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain
    • Ko Y, Ament SA, Eddy JA, Caballero J, Earls JC, Hood L, Price ND (2013) Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain. Proc Natl Acad Sci 110(8):3095–3100
    • (2013) Proc Natl Acad Sci , vol.110 , Issue.8 , pp. 3095-3100
    • Ko, Y.1    Ament, S.A.2    Eddy, J.A.3    Caballero, J.4    Earls, J.C.5    Hood, L.6    Price, N.D.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.