-
1
-
-
80052742721
-
Molecular mechanism of scanning and start codon selection in eukaryotes
-
Hinnebusch, A. G. Molecular mechanism of scanning and start codon selection in eukaryotes. Microbiol. Mol. Biol. Rev. 75, 434-467 (2011).
-
(2011)
Microbiol. Mol. Biol. Rev.
, vol.75
, pp. 434-467
-
-
Hinnebusch, A.G.1
-
2
-
-
75149196287
-
The mechanism of eukaryotic translation initiation and principles of its regulation
-
Jackson, R. J., Hellen, C. U. T. & Pestova, T. V. The mechanism of eukaryotic translation initiation and principles of its regulation. Nat. Rev. Mol. Cell Biol. 11, 113-127 (2010).
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 113-127
-
-
Jackson, R.J.1
Hellen, C.U.T.2
Pestova, T.V.3
-
3
-
-
79953052296
-
mRNA helicases: The tacticians of translational control
-
Parsyan, A. et al. mRNA helicases: the tacticians of translational control. Nat. Rev. Mol. Cell Biol. 12, 235-245 (2011).
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 235-245
-
-
Parsyan, A.1
-
4
-
-
60149091189
-
Regulation of translation initiation in eukaryotes: Mechanisms and biological targets
-
Sonenberg, N. & Hinnebusch, A. G. Regulation of translation initiation in eukaryotes: mechanisms and biological targets. Cell 136, 731-745 (2009).
-
(2009)
Cell
, vol.136
, pp. 731-745
-
-
Sonenberg, N.1
Hinnebusch, A.G.2
-
5
-
-
66549108297
-
Structure-function insights into prokaryotic and eukaryotic translation initiation
-
Myasnikov, A. G., Simonetti, A., Marzi, S. & Klaholz, B. P. Structure-function insights into prokaryotic and eukaryotic translation initiation. Curr. Opin. Struct. Biol. 19, 300-309 (2009).
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 300-309
-
-
Myasnikov, A.G.1
Simonetti, A.2
Marzi, S.3
Klaholz, B.P.4
-
6
-
-
0023660877
-
At least six nucleotides preceding the AUG initiator codon enhance translation in mammalian cells
-
Kozak, M. At least six nucleotides preceding the AUG initiator codon enhance translation in mammalian cells. J. Mol. Biol. 196, 947-950 (1987).
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 947-950
-
-
Kozak, M.1
-
7
-
-
0026151096
-
Effects of long 50 leader sequences on initiation by eukaryotic ribosomes in vitro
-
Kozak, M. Effects of long 50 leader sequences on initiation by eukaryotic ribosomes in vitro. Gene Expr. 1, 117-125 (1991).
-
(1991)
Gene Expr.
, vol.1
, pp. 117-125
-
-
Kozak, M.1
-
8
-
-
0035831269
-
Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit
-
Spahn, C. M. et al. Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit. Science 291, 1959-1962 (2001).
-
(2001)
Science
, vol.291
, pp. 1959-1962
-
-
Spahn, C.M.1
-
9
-
-
4644247805
-
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: The IRES functions as an RNA-based translation factor
-
Spahn, C. M. T. et al. Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. Cell 118, 465-475 (2004).
-
(2004)
Cell
, vol.118
, pp. 465-475
-
-
Spahn, C.M.T.1
-
10
-
-
84874191297
-
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
-
Hashem, Y. et al. High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome. Nature 494, 385-389 (2013).
-
(2013)
Nature
, vol.494
, pp. 385-389
-
-
Hashem, Y.1
-
11
-
-
84905655144
-
Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA
-
Yamamoto, H. et al. Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA. Nat. Struct. Mol. Biol. 21, 721-727 (2014).
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 721-727
-
-
Yamamoto, H.1
-
12
-
-
84900435661
-
Initiation of translation by cricket paralysis virus IRES requires its translocation in the ribosome
-
Fernandez, I. S., Bai, X.-C., Murshudov, G., Scheres, S. H. W. & Ramakrishnan, V. Initiation of translation by cricket paralysis virus IRES requires its translocation in the ribosome. Cell 157, 823-831 (2014).
-
(2014)
Cell
, vol.157
, pp. 823-831
-
-
Fernandez, I.S.1
Bai, X.-C.2
Murshudov, G.3
Scheres, S.H.W.4
Ramakrishnan, V.5
-
13
-
-
84903446275
-
Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center
-
Koh, C. S., Brilot, A. F., Grigorieff, N. & Korostelev, A. A. Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center. Proc. Natl Acad. Sci. USA 111, 9139-9144 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 9139-9144
-
-
Koh, C.S.1
Brilot, A.F.2
Grigorieff, N.3
Korostelev, A.A.4
-
14
-
-
78651468719
-
Cap-assisted internal initiation of translation of histone h4
-
Martin, F. et al. Cap-assisted internal initiation of translation of histone h4. Mol. Cell 41, 197-209 (2011).
-
(2011)
Mol. Cell
, vol.41
, pp. 197-209
-
-
Martin, F.1
-
15
-
-
84872467534
-
Rapid purification of ribosomal particles assembled on histone H4 mRNA: A new method based on mRNA-DNA chimaeras
-
Prongidi-Fix, L. et al. Rapid purification of ribosomal particles assembled on histone H4 mRNA: a new method based on mRNA-DNA chimaeras. Biochem. J. 449, 719-728 (2013).
-
(2013)
Biochem. J.
, vol.449
, pp. 719-728
-
-
Prongidi-Fix, L.1
-
16
-
-
84928786981
-
Structure of the human 80S ribosome
-
Khatter, H., Myasnikov, A. G., Natchiar, S. K. & Klaholz, B. P. Structure of the human 80S ribosome. Nature 520, 640-645 (2015).
-
(2015)
Nature
, vol.520
, pp. 640-645
-
-
Khatter, H.1
Myasnikov, A.G.2
Natchiar, S.K.3
Klaholz, B.P.4
-
17
-
-
84954271442
-
Insertion of the biogenesis factor rei1 probes the ribosomal tunnel during 60S maturation
-
Greber, B. J. et al. Insertion of the biogenesis factor rei1 probes the ribosomal tunnel during 60S maturation. Cell 164, 91-102 (2015).
-
(2015)
Cell
, vol.164
, pp. 91-102
-
-
Greber, B.J.1
-
18
-
-
83855162728
-
The structure of the eukaryotic ribosome at 3.0 resolution
-
Ben-Shem, A. et al. The structure of the eukaryotic ribosome at 3.0 resolution. Science 334, 1524-1529 (2011).
-
(2011)
Science
, vol.334
, pp. 1524-1529
-
-
Ben-Shem, A.1
-
19
-
-
84940478899
-
Structural basis for stop codon recognition in eukaryotes
-
Brown, A., Shao, S., Murray, J., Hegde, R. S. & Ramakrishnan, V. Structural basis for stop codon recognition in eukaryotes. Nature 524, 493-496 (2015).
-
(2015)
Nature
, vol.524
, pp. 493-496
-
-
Brown, A.1
Shao, S.2
Murray, J.3
Hegde, R.S.4
Ramakrishnan, V.5
-
20
-
-
84878333225
-
Structure of the mammalian ribosomal 43S preinitiation complex bound to the scanning factor DHX29
-
Hashem, Y. et al. Structure of the mammalian ribosomal 43S preinitiation complex bound to the scanning factor DHX29. Cell 153, 1108-1119 (2013).
-
(2013)
Cell
, vol.153
, pp. 1108-1119
-
-
Hashem, Y.1
-
21
-
-
57649234552
-
Translation initiation on mammalian mRNAs with structured 50UTRs requires DExH-box protein DHX29
-
Pisareva, V. P., Pisarev, A. V., Komar, A. A., Hellen, C. U. T. & Pestova, T. V. Translation initiation on mammalian mRNAs with structured 50UTRs requires DExH-box protein DHX29. Cell 135, 1237-1250 (2008).
-
(2008)
Cell
, vol.135
, pp. 1237-1250
-
-
Pisareva, V.P.1
Pisarev, A.V.2
Komar, A.A.3
Hellen, C.U.T.4
Pestova, T.V.5
-
22
-
-
33645277360
-
Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
-
Doma, M. K. & Parker, R. Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation. Nature 440, 561-564 (2006).
-
(2006)
Nature
, vol.440
, pp. 561-564
-
-
Doma, M.K.1
Parker, R.2
-
23
-
-
79958809003
-
Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome
-
Becker, T. et al. Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome. Nat. Struct. Mol. Biol. 18, 715-720 (2011).
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 715-720
-
-
Becker, T.1
-
24
-
-
0036048711
-
Viral strategies of translation initiation: Ribosomal shunt and reinitiation
-
Ryabova, L. A., Pooggin, M. M. & Hohn, T. Viral strategies of translation initiation: ribosomal shunt and reinitiation. Prog. Nucleic Acid Res. Mol. Biol. 72, 1-39 (2002).
-
(2002)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.72
, pp. 1-39
-
-
Ryabova, L.A.1
Pooggin, M.M.2
Hohn, T.3
-
25
-
-
84908283287
-
Base pairing between hepatitis C virus RNA and 18S rRNA is required for IRES-dependent translation initiation in vivo
-
Matsuda, D. & Mauro, V. P. Base pairing between hepatitis C virus RNA and 18S rRNA is required for IRES-dependent translation initiation in vivo. Proc. Natl Acad. Sci. USA 111, 15385-15389 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 15385-15389
-
-
Matsuda, D.1
Mauro, V.P.2
-
26
-
-
33646186257
-
Leader sequence of a plant ribosomal protein gene with complementarity to the 18S rRNA triggers in vitro cap-independent translation
-
Vanderhaeghen, R. et al. Leader sequence of a plant ribosomal protein gene with complementarity to the 18S rRNA triggers in vitro cap-independent translation. FEBS Lett. 580, 2630-2636 (2006).
-
(2006)
FEBS Lett.
, vol.580
, pp. 2630-2636
-
-
Vanderhaeghen, R.1
-
27
-
-
33745453438
-
Ribosomal shunting mediated by a translational enhancer element that base pairs to 18S rRNA
-
Chappell, S. A., Dresios, J., Edelman, G. M. & Mauro, V. P. Ribosomal shunting mediated by a translational enhancer element that base pairs to 18S rRNA. Proc. Natl Acad. Sci. USA 103, 9488-9493 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 9488-9493
-
-
Chappell, S.A.1
Dresios, J.2
Edelman, G.M.3
Mauro, V.P.4
-
28
-
-
57749101275
-
Antisense masking reveals contributions of mRNA-rRNA base pairing to translation of Gtx and FGF2 mRNAs
-
Panopoulos, P. & Mauro, V. P. Antisense masking reveals contributions of mRNA-rRNA base pairing to translation of Gtx and FGF2 mRNAs. J. Biol. Chem. 283, 33087-33093 (2008).
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 33087-33093
-
-
Panopoulos, P.1
Mauro, V.P.2
-
29
-
-
30044446378
-
An mRNA-rRNA base-pairing mechanism for translation initiation in eukaryotes
-
Dresios, J., Chappell, S. A., Zhou, W. & Mauro, V. P. An mRNA-rRNA base-pairing mechanism for translation initiation in eukaryotes. Nat. Struct. Mol. Biol. 13, 30-34 (2006).
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 30-34
-
-
Dresios, J.1
Chappell, S.A.2
Zhou, W.3
Mauro, V.P.4
-
30
-
-
0000831271
-
-
(eds Hershey, J. W., Mathews, M. B. & Sonenberg, N.) (Cold Spring Harbor Laboratory Press)
-
Merrick, W. C. & Hershey, J. W. in Translation Control (eds Hershey, J. W., Mathews, M. B. & Sonenberg, N.) (Cold Spring Harbor Laboratory Press, 1996).
-
(1996)
Translation Control
-
-
Merrick, W.C.1
Hershey, J.W.2
-
31
-
-
0034682720
-
Initiation of protein synthesis from the A site of the ribosome
-
Wilson, J. E., Pestova, T. V., Hellen, C. U. & Sarnow, P. Initiation of protein synthesis from the A site of the ribosome. Cell 102, 511-520 (2000).
-
(2000)
Cell
, vol.102
, pp. 511-520
-
-
Wilson, J.E.1
Pestova, T.V.2
Hellen, C.U.3
Sarnow, P.4
-
32
-
-
84880848354
-
Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM
-
Li, X. et al. Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nat. Methods 10, 584-590 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 584-590
-
-
Li, X.1
-
33
-
-
33845332754
-
EMAN2: An extensible image processing suite for electron microscopy
-
Tang, G. et al. EMAN2: an extensible image processing suite for electron microscopy. J. Struct. Biol. 157, 38-46 (2007).
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 38-46
-
-
Tang, G.1
-
34
-
-
84868444740
-
RELION: Implementation of a Bayesian approach to cryo-EM structure determination
-
Scheres, S. H. W. RELION: implementation of a Bayesian approach to cryo-EM structure determination. J. Struct. Biol. 180, 519-530 (2012).
-
(2012)
J. Struct. Biol.
, vol.180
, pp. 519-530
-
-
Scheres, S.H.W.1
-
35
-
-
84946488108
-
CTFFIND4: Fast and accurate defocus estimation from electron micrographs
-
Rohou, A. & Grigorieff, N. CTFFIND4: fast and accurate defocus estimation from electron micrographs. J. Struct. Biol. 192, 216-221 (2015).
-
(2015)
J. Struct. Biol.
, vol.192
, pp. 216-221
-
-
Rohou, A.1
Grigorieff, N.2
-
36
-
-
77249087063
-
Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin
-
Schneider-Poetsch, T. et al. Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin. Nat. Chem. Biol. 6, 209-217 (2010).
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 209-217
-
-
Schneider-Poetsch, T.1
-
37
-
-
47949110827
-
Structural basis for hygromycin B inhibition of protein biosynthesis
-
Borovinskaya, M. A., Shoji, S., Fredrick, K. & Cate, J. H. D. Structural basis for hygromycin B inhibition of protein biosynthesis. RNA 14, 1590-1599 (2008).
-
(2008)
RNA
, vol.14
, pp. 1590-1599
-
-
Borovinskaya, M.A.1
Shoji, S.2
Fredrick, K.3
Cate, J.H.D.4
-
38
-
-
0021318782
-
Fidelity of the eukaryotic codon-anticodon interaction: Interference by aminoglycoside antibiotics
-
Eustice, D. C. & Wilhelm, J. M. Fidelity of the eukaryotic codon-anticodon interaction: interference by aminoglycoside antibiotics. Biochemistry 23, 1462-1467 (1984).
-
(1984)
Biochemistry
, vol.23
, pp. 1462-1467
-
-
Eustice, D.C.1
Wilhelm, J.M.2
-
39
-
-
0034704217
-
The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit
-
Brodersen, D. E. et al. The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit. Cell 103, 1143-1154 (2000).
-
(2000)
Cell
, vol.103
, pp. 1143-1154
-
-
Brodersen, D.E.1
-
40
-
-
4444221565
-
UCSF Chimera-A visualization system for exploratory research and analysis
-
Pettersen, E. F. et al. UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612 (2004).
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
-
41
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr. 66, 486-501 (2010).
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
42
-
-
80053642374
-
The Phenix software for automated determination of macromolecular structures
-
Adams, P. D. et al. The Phenix software for automated determination of macromolecular structures. Methods 55, 94-106 (2011).
-
(2011)
Methods
, vol.55
, pp. 94-106
-
-
Adams, P.D.1
-
43
-
-
79961172566
-
Structural scaffold for eIF4E binding selectivity of 4E-BP isoforms: Crystal structure of eIF4E binding region of 4E-BP2 and its comparison with that of 4E-BP1
-
Fukuyo, A., In, Y., Ishida, T. & Tomoo, K. Structural scaffold for eIF4E binding selectivity of 4E-BP isoforms: crystal structure of eIF4E binding region of 4E-BP2 and its comparison with that of 4E-BP1. J. Pept. Sci. 17, 650-657 (2011).
-
(2011)
J. Pept. Sci.
, vol.17
, pp. 650-657
-
-
Fukuyo, A.1
In, Y.2
Ishida, T.3
Tomoo, K.4
-
44
-
-
70349597601
-
Electronic Ligand Builder and Optimization Workbench (eLBOW): A tool for ligand coordinate and restraint generation
-
Moriarty, N. W., Grosse-Kunstleve, R. W. & Adams, P. D. electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation. Acta Crystallogr. D. Biol. Crystallogr 65, 1074-1080 (2009).
-
(2009)
Acta Crystallogr. D. Biol. Crystallogr
, vol.65
, pp. 1074-1080
-
-
Moriarty, N.W.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
|