-
2
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37: W202-W208, 2009.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W202-W208
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
3
-
-
84906656463
-
The mitochondrial free radical theory of aging
-
Barja G. The mitochondrial free radical theory of aging. Prog Mol Biol Transl Sci 127: 1-27, 2014.
-
(2014)
Prog Mol Biol Transl Sci
, vol.127
, pp. 1-27
-
-
Barja, G.1
-
4
-
-
25444474703
-
Mitochondria take center stage in aging and neurodegeneration
-
Beal MF. Mitochondria take center stage in aging and neurodegeneration. Ann Neurol 58: 495-505, 2005.
-
(2005)
Ann Neurol
, vol.58
, pp. 495-505
-
-
Beal, M.F.1
-
5
-
-
4544280654
-
Mitochondria and aging: A role for the permeability transition?
-
Crompton M. Mitochondria and aging: a role for the permeability transition? Aging Cell 3: 3-6, 2004.
-
(2004)
Aging Cell
, vol.3
, pp. 3-6
-
-
Crompton, M.1
-
6
-
-
69449093363
-
Epigenetic mechanisms that underpin metabolic and cardiovascular diseases
-
Gluckman PD, Hanson MA, Buklijas T, Low FM, Beedle AS. Epigenetic mechanisms that underpin metabolic and cardiovascular diseases. Nat Rev Endocrinol 5: 401-408, 2009.
-
(2009)
Nat Rev Endocrinol
, vol.5
, pp. 401-408
-
-
Gluckman, P.D.1
Hanson, M.A.2
Buklijas, T.3
Low, F.M.4
Beedle, A.S.5
-
7
-
-
34447506667
-
Quantifying similarity between motifs
-
Gupta S, Stamatoyannopoulos JA, Bailey TL, Noble WS. Quantifying similarity between motifs. Genome Biol 8: R24, 2007.
-
(2007)
Genome Biol
, vol.8
, pp. R24
-
-
Gupta, S.1
Stamatoyannopoulos, J.A.2
Bailey, T.L.3
Noble, W.S.4
-
8
-
-
0030989154
-
A circadian enhancer mediates PERdependent mRNA cycling in Drosophila melanogaster
-
Hao H, Allen DL, Hardin PE. A circadian enhancer mediates PERdependent mRNA cycling in Drosophila melanogaster. Mol Cell Biol 17: 3687-3693, 1997.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 3687-3693
-
-
Hao, H.1
Allen, D.L.2
Hardin, P.E.3
-
9
-
-
4544356423
-
Transcription regulation within the circadian clock: The E-box and beyond
-
Hardin PE. Transcription regulation within the circadian clock: the E-box and beyond. J Biol Rhythms 19: 348-360, 2004.
-
(2004)
J Biol Rhythms
, vol.19
, pp. 348-360
-
-
Hardin, P.E.1
-
10
-
-
0015319592
-
The biologic clock: The mitochondria?
-
Harman D. The biologic clock: the mitochondria? J Am Geriatr Soc 20:145-147, 1972.
-
(1972)
J Am Geriatr Soc
, vol.20
, pp. 145-147
-
-
Harman, D.1
-
11
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
He YF, Li BZ, Li Z, Liu P, Wang Y, Tang Q, Ding J, Jia Y, Chen Z, Li L, Sun Y, Li X, Dai Q, Song CX, Zhang K, He C, Xu GL. Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 333: 1303-1307, 2011.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.F.1
Li, B.Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
Sun, Y.11
Li, X.12
Dai, Q.13
Song, C.X.14
Zhang, K.15
He, C.16
Xu, G.L.17
-
12
-
-
0024713177
-
DNA methylation and epigenetic mechanisms
-
Holliday R. DNA methylation and epigenetic mechanisms. Cell Biophys 15: 15-20, 1989.
-
(1989)
Cell Biophys
, vol.15
, pp. 15-20
-
-
Holliday, R.1
-
13
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57, 2009.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
14
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito S, Shen L, Dai Q, Wu SC, Collins LB, Swenberg JA, He C, Zhang Y. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333: 1300-1303, 2011.
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
Swenberg, J.A.6
He, C.7
Zhang, Y.8
-
16
-
-
84926004566
-
Redox theory of aging
-
Jones DP. Redox theory of aging. Redox Biol 5: 71-79, 2015.
-
(2015)
Redox Biol
, vol.5
, pp. 71-79
-
-
Jones, D.P.1
-
17
-
-
77952428203
-
Defective DNA replication impairs mitochondrial biogenesis in human failing hearts
-
Karamanlidis G, Nascimben L, Couper GS, Shekar PS, del Monte F, Tian R. Defective DNA replication impairs mitochondrial biogenesis in human failing hearts. Circ Res 106: 1541-1548.
-
Circ Res
, vol.106
, pp. 1541-1548
-
-
Karamanlidis, G.1
Nascimben, L.2
Couper, G.S.3
Shekar, P.S.4
del Monte, F.5
Tian, R.6
-
18
-
-
84943258103
-
AZTinduced mitochondrial toxicity: An epigenetic paradigm for dysregulation of gene expression through mitochondrial oxidative stress
-
Koczor CA, Jiao Z, Fields EJ, Russ R, Ludaway T, Lewis W. AZTinduced mitochondrial toxicity: an epigenetic paradigm for dysregulation of gene expression through mitochondrial oxidative stress. Physiol Genomics 47: 447-454, 2015.
-
(2015)
Physiol Genomics
, vol.47
, pp. 447-454
-
-
Koczor, C.A.1
Jiao, Z.2
Fields, E.J.3
Russ, R.4
Ludaway, T.5
Lewis, W.6
-
19
-
-
84880270161
-
Detection of differentially methylated gene promoters in failing and nonfailing human left ventricle myocardium using computation analysis
-
Koczor CA, Lee EK, Torres RA, Boyd A, Vega JD, Uppal K, Yuan F, Fields EJ, Samarel AM, Lewis W. Detection of differentially methylated gene promoters in failing and nonfailing human left ventricle myocardium using computation analysis. Physiol Genomics 45: 597-605, 2013.
-
(2013)
Physiol Genomics
, vol.45
, pp. 597-605
-
-
Koczor, C.A.1
Lee, E.K.2
Torres, R.A.3
Boyd, A.4
Vega, J.D.5
Uppal, K.6
Yuan, F.7
Fields, E.J.8
Samarel, A.M.9
Lewis, W.10
-
20
-
-
84947705372
-
Ecstasy (MDMA) alters cardiac gene expression and DNA methylation: Implications for circadian rhythm dysfunction in the heart
-
Koczor CA, Ludlow I, Hight RS 2nd, Jiao Z, Fields E, Ludaway T, Russ R, Torres RA, Lewis W. Ecstasy (MDMA) alters cardiac gene expression and DNA methylation: implications for circadian rhythm dysfunction in the heart. Toxicol Sci 148: 183-191, 2015.
-
(2015)
Toxicol Sci
, vol.148
, pp. 183-191
-
-
Koczor, C.A.1
Ludlow, I.2
Hight, R.S.3
Jiao, Z.4
Fields, E.5
Ludaway, T.6
Russ, R.7
Torres, R.A.8
Lewis, W.9
-
21
-
-
84873838183
-
Transgenic mouse model with deficient mitochondrial polymerase exhibits reduced state IV respiration and enhanced cardiac fibrosis
-
Koczor CA, Torres RA, Fields E, Qin Q, Park J, Ludaway T, Russ R, Lewis W. Transgenic mouse model with deficient mitochondrial polymerase exhibits reduced state IV respiration and enhanced cardiac fibrosis. Lab Invest 93: 151-158, 2013.
-
(2013)
Lab Invest
, vol.93
, pp. 151-158
-
-
Koczor, C.A.1
Torres, R.A.2
Fields, E.3
Qin, Q.4
Park, J.5
Ludaway, T.6
Russ, R.7
Lewis, W.8
-
22
-
-
84880269856
-
Thymidine kinase and mtDNA depletion in human cardiomyopathy: Epigenetic and translational evidence for energy starvation
-
Koczor CA, Torres RA, Fields EJ, Boyd A, He S, Patel N, Lee EK, Samarel AM, Lewis W. Thymidine kinase and mtDNA depletion in human cardiomyopathy: epigenetic and translational evidence for energy starvation. Physiol Genomics 45: 590-596, 2013.
-
(2013)
Physiol Genomics
, vol.45
, pp. 590-596
-
-
Koczor, C.A.1
Torres, R.A.2
Fields, E.J.3
Boyd, A.4
He, S.5
Patel, N.6
Lee, E.K.7
Samarel, A.M.8
Lewis, W.9
-
23
-
-
68249120547
-
A regulatory pathway involving Notch1/beta-catenin/Isl1 determines cardiac progenitor cell fate
-
Kwon C, Qian L, Cheng P, Nigam V, Arnold J, Srivastava D. A regulatory pathway involving Notch1/beta-catenin/Isl1 determines cardiac progenitor cell fate. Nat Cell Biol 11: 951-957, 2009.
-
(2009)
Nat Cell Biol
, vol.11
, pp. 951-957
-
-
Kwon, C.1
Qian, L.2
Cheng, P.3
Nigam, V.4
Arnold, J.5
Srivastava, D.6
-
24
-
-
84938293899
-
The epigenetics of aging and neurodegeneration
-
Lardenoije R, Iatrou A, Kenis G, Kompotis K, Steinbusch HW, Mastroeni D, Coleman P, Lemere CA, Hof PR, van den Hove DL, Rutten BP. The epigenetics of aging and neurodegeneration. Prog Neurobiol 131: 21-64, 2015.
-
(2015)
Prog Neurobiol
, vol.131
, pp. 21-64
-
-
Lardenoije, R.1
Iatrou, A.2
Kenis, G.3
Kompotis, K.4
Steinbusch, H.W.5
Mastroeni, D.6
Coleman, P.7
Lemere, C.A.8
Hof, P.R.9
van den Hove, D.L.10
Rutten, B.P.11
-
25
-
-
33947537266
-
Decreased mtDNA, oxidative stress, cardiomyopathy, and death from transgenic cardiac targeted human mutant polymerase gamma
-
Lewis W, Day BJ, Kohler JJ, Hosseini SH, Chan SS, Green EC, Haase CP, Keebaugh ES, Long R, Ludaway T, Russ R, Steltzer J, Tioleco N, Santoianni R, Copeland WC. Decreased mtDNA, oxidative stress, cardiomyopathy, and death from transgenic cardiac targeted human mutant polymerase gamma. Lab Invest 87: 326-335, 2007.
-
(2007)
Lab Invest
, vol.87
, pp. 326-335
-
-
Lewis, W.1
Day, B.J.2
Kohler, J.J.3
Hosseini, S.H.4
Chan, S.S.5
Green, E.C.6
Haase, C.P.7
Keebaugh, E.S.8
Long, R.9
Ludaway, T.10
Russ, R.11
Steltzer, J.12
Tioleco, N.13
Santoianni, R.14
Copeland, W.C.15
-
26
-
-
0026681374
-
Zidovudine induces molecular, biochemical, and ultrastructural changes in rat skeletal muscle mitochondria
-
Lewis W, Gonzalez B, Chomyn A, Papoian T. Zidovudine induces molecular, biochemical, and ultrastructural changes in rat skeletal muscle mitochondria. J Clin Invest 89: 1354-1360, 1992.
-
(1992)
J Clin Invest
, vol.89
, pp. 1354-1360
-
-
Lewis, W.1
Gonzalez, B.2
Chomyn, A.3
Papoian, T.4
-
27
-
-
0034007233
-
Cardiac dysfunction occurs in the HIV-1 transgenic mouse treated with zidovudine
-
Lewis W, Grupp IL, Grupp G, Hoit B, Morris R, Samarel AM, Bruggeman L, Klotman P. Cardiac dysfunction occurs in the HIV-1 transgenic mouse treated with zidovudine. Lab Invest 80: 187-197, 2000.
-
(2000)
Lab Invest
, vol.80
, pp. 187-197
-
-
Lewis, W.1
Grupp, I.L.2
Grupp, G.3
Hoit, B.4
Morris, R.5
Samarel, A.M.6
Bruggeman, L.7
Klotman, P.8
-
28
-
-
0028158398
-
Cardiac mitochondrial DNA polymerase- gamma is inhibited competitively and noncompetitively by phosphorylated zidovudine
-
Lewis W, Simpson JF, Meyer RR. Cardiac mitochondrial DNA polymerase- gamma is inhibited competitively and noncompetitively by phosphorylated zidovudine. Circ Res 74: 344-348, 1994.
-
(1994)
Circ Res
, vol.74
, pp. 344-348
-
-
Lewis, W.1
Simpson, J.F.2
Meyer, R.R.3
-
29
-
-
79251471545
-
-
edited by Fuster V, O’Rourke RA, Poole-Wilson, P, WalshRA. New York: McGraw Hill
-
Mestroni L, Gilbert EM, Lowes BD, Bristow Dilated Cardiomyopathy MR. In: Hurst’s The Heart, edited by Fuster V, O’Rourke RA, Poole-Wilson, P, WalshRA. New York: McGraw Hill, 2008, p. 803-821.
-
(2008)
Hurst’s The Heart
, pp. 803-821
-
-
Mestroni, L.1
Gilbert, E.M.2
Lowes, B.D.3
Bristow Dilated Cardiomyopathy, M.R.4
-
30
-
-
33947239659
-
The failing heart-an engine out of fuel
-
Neubauer S. The failing heart-an engine out of fuel. N Engl J Med 356: 1140-1151, 2007.
-
(2007)
N Engl J Med
, vol.356
, pp. 1140-1151
-
-
Neubauer, S.1
-
31
-
-
84908042366
-
Arid3b is essential for second heart field cell deployment and heart patterning
-
Uribe V, Badia-Careaga C, Casanova JC, Dominguez JN, de la Pompa JL, Sanz-Ezquerro JJ. Arid3b is essential for second heart field cell deployment and heart patterning. Development 141: 4168-4181, 2014.
-
(2014)
Development
, vol.141
, pp. 4168-4181
-
-
Uribe, V.1
Badia-Careaga, C.2
Casanova, J.C.3
Dominguez, J.N.4
de la Pompa, J.L.5
Sanz-Ezquerro, J.J.6
-
32
-
-
34250188803
-
Genomic patterns of DNA methylation: Targets and function of an epigenetic mark
-
Weber M, Schubeler D. Genomic patterns of DNA methylation: targets and function of an epigenetic mark. Curr Opin Cell Biol 19: 273-280, 2007.
-
(2007)
Curr Opin Cell Biol
, vol.19
, pp. 273-280
-
-
Weber, M.1
Schubeler, D.2
|