-
1
-
-
0344824383
-
Visualizing the distribution and transport of mRNAs in living cells
-
Bratu, D.P., Cha, B.J., Mhlanga, M.M., Kramer, F.R. and Tyagi, S. (2003) Visualizing the distribution and transport of mRNAs in living cells. Proc. Natl. Acad. Sci. U.S.A., 100, 13308-13313.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 13308-13313
-
-
Bratu, D.P.1
Cha, B.J.2
Mhlanga, M.M.3
Kramer, F.R.4
Tyagi, S.5
-
2
-
-
0029670262
-
Molecular beacons: Probes that fluoresce upon hybridization
-
Tyagi, S. and Kramer, F.R. (1996) Molecular beacons: probes that fluoresce upon hybridization. Nat. Biotechnol., 14, 303-308.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 303-308
-
-
Tyagi, S.1
Kramer, F.R.2
-
3
-
-
65449131152
-
Imaging intracellular RNA distribution and dynamics in living cells
-
Tyagi, S. (2009) Imaging intracellular RNA distribution and dynamics in living cells. Nat. Methods, 6, 331-338.
-
(2009)
Nat. Methods
, vol.6
, pp. 331-338
-
-
Tyagi, S.1
-
4
-
-
0032185810
-
Localization of ASH1 mRNA particles in living yeast
-
Bertrand, E., Chartrand, P., Schaefer, M., Shenoy, S.M., Singer, R.H. and Long, R.M. (1998) Localization of ASH1 mRNA particles in living yeast. Mol. Cell, 2, 437-445.
-
(1998)
Mol. Cell
, vol.2
, pp. 437-445
-
-
Bertrand, E.1
Chartrand, P.2
Schaefer, M.3
Shenoy, S.M.4
Singer, R.H.5
Long, R.M.6
-
5
-
-
34250191761
-
RNA visualization in live bacterial cells using fluorescent protein complementation
-
Valencia-Burton, M., McCullough, R.M., Cantor, C.R. and Broude, N.E. (2007) RNA visualization in live bacterial cells using fluorescent protein complementation. Nat. Methods, 4, 421-427.
-
(2007)
Nat. Methods
, vol.4
, pp. 421-427
-
-
Valencia-Burton, M.1
McCullough, R.M.2
Cantor, C.R.3
Broude, N.E.4
-
6
-
-
34547637607
-
LambdaN-GFP: An RNA reporter system for live-cell imaging
-
Daigle, N. and Ellenberg, J. (2007) LambdaN-GFP: an RNA reporter system for live-cell imaging. Nat. Methods, 4, 633-636.
-
(2007)
Nat. Methods
, vol.4
, pp. 633-636
-
-
Daigle, N.1
Ellenberg, J.2
-
7
-
-
34250210525
-
Imaging dynamics of endogenous mitochondrial RNA in single living cells
-
Ozawa, T., Natori, Y., Sato, M. and Umezawa, Y. (2007) Imaging dynamics of endogenous mitochondrial RNA in single living cells. Nat. Methods, 4, 413-419.
-
(2007)
Nat. Methods
, vol.4
, pp. 413-419
-
-
Ozawa, T.1
Natori, Y.2
Sato, M.3
Umezawa, Y.4
-
8
-
-
0025074907
-
In vitro selection of RNA molecules that bind specific ligands
-
Ellington, A.D. and Szostak, J.W. (1990) In vitro selection of RNA molecules that bind specific ligands. Nature, 346, 818-822.
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
9
-
-
0344430112
-
Aptamers switch on fluorescence of triphenylmethane dyes
-
Babendure, J.R., Adams, S.R. and Tsien, R.Y. (2003) Aptamers switch on fluorescence of triphenylmethane dyes. J. Am. Chem. Soc., 125, 14716-14717.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 14716-14717
-
-
Babendure, J.R.1
Adams, S.R.2
Tsien, R.Y.3
-
10
-
-
44449122485
-
Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules
-
Constantin, T.P., Silva, G.L., Robertson, K.L., Hamilton, T.P., Fague, K., Waggoner, A.S. and Armitage, B.A. (2008) Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules. Org. Lett., 10, 1561-1564.
-
(2008)
Org. Lett.
, vol.10
, pp. 1561-1564
-
-
Constantin, T.P.1
Silva, G.L.2
Robertson, K.L.3
Hamilton, T.P.4
Fague, K.5
Waggoner, A.S.6
Armitage, B.A.7
-
11
-
-
78649643879
-
Combining SELEX screening and rational design to develop light-up fluorophore-RNA aptamer pairs for RNA tagging
-
Lee, J., Lee, K.H., Jeon, J., Dragulescu-Andrasi, A., Xiao, F. and Rao, J. (2010) Combining SELEX screening and rational design to develop light-up fluorophore-RNA aptamer pairs for RNA tagging. ACS Chem. Biol., 5, 1065-1074.
-
(2010)
ACS Chem. Biol.
, vol.5
, pp. 1065-1074
-
-
Lee, J.1
Lee, K.H.2
Jeon, J.3
Dragulescu-Andrasi, A.4
Xiao, F.5
Rao, J.6
-
12
-
-
79551489562
-
Isolation and characterization of fluorescence-enhancing RNA tags
-
Wiesmayr, A. and Jäschke, A. (2011) Isolation and characterization of fluorescence-enhancing RNA tags. Bioorg. Med. Chem., 19, 1041-1047.
-
(2011)
Bioorg. Med. Chem.
, vol.19
, pp. 1041-1047
-
-
Wiesmayr, A.1
Jäschke, A.2
-
13
-
-
0033033283
-
Laser-mediated, site-specific inactivation of RNA transcripts
-
Grate, D. and Wilson, C. (1999) Laser-mediated, site-specific inactivation of RNA transcripts. Proc. Natl. Acad. Sci. U.S.A., 96, 6131-6136.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 6131-6136
-
-
Grate, D.1
Wilson, C.2
-
14
-
-
50249150245
-
Transcription monitoring using fused RNA with a dye-binding light-up aptamer as a tag: A blue fluorescent RNA
-
Sando, S., Narita, A., Hayami, M. and Aoyama, Y. (2008) Transcription monitoring using fused RNA with a dye-binding light-up aptamer as a tag: a blue fluorescent RNA. Chem. Commun. (Camb.), 3858-3860.
-
(2008)
Chem. Commun. (Camb.)
, pp. 3858-3860
-
-
Sando, S.1
Narita, A.2
Hayami, M.3
Aoyama, Y.4
-
15
-
-
84908193573
-
RNA mango aptamer-fluorophore: A bright, high-affinity complex for RNA labeling and tracking
-
Dolgosheina, E.V., Jeng, S.C.Y., Panchapakesan, S.S.S., Cojocaru, R., Chen, P.S.K., Wilson, P.D., Hawkins, N., Wiggins, P.A. and Unrau, P.J. (2014) RNA mango aptamer-fluorophore: a bright, high-affinity complex for RNA labeling and tracking. ACS Chem. Biol., 9, 2412-2420.
-
(2014)
ACS Chem. Biol.
, vol.9
, pp. 2412-2420
-
-
Dolgosheina, E.V.1
Jeng, S.C.Y.2
Panchapakesan, S.S.S.3
Cojocaru, R.4
Chen, P.S.K.5
Wilson, P.D.6
Hawkins, N.7
Wiggins, P.A.8
Unrau, P.J.9
-
16
-
-
0032437793
-
Isolation and characterization of fluorophore-binding RNA aptamers
-
Holeman, L.A., Robinson, S.L., Szostak, J.W. and Wilson, C. (1998) Isolation and characterization of fluorophore-binding RNA aptamers. Fold. Des., 3, 423-431.
-
(1998)
Fold. Des.
, vol.3
, pp. 423-431
-
-
Holeman, L.A.1
Robinson, S.L.2
Szostak, J.W.3
Wilson, C.4
-
17
-
-
77952499429
-
Selecting RNA aptamers for synthetic biology: Investigating magnesium dependence and predicting binding affinity
-
Carothers, J.M., Goler, J.A., Kapoor, Y., Lara, L. and Keasling, J.D. (2010) Selecting RNA aptamers for synthetic biology: investigating magnesium dependence and predicting binding affinity. Nucleic Acids Res., 38, 2736-2747.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2736-2747
-
-
Carothers, J.M.1
Goler, J.A.2
Kapoor, Y.3
Lara, L.4
Keasling, J.D.5
-
18
-
-
79960959180
-
RNA mimics of green fluorescent protein
-
Paige, J.S., Wu, K.Y. and Jaffrey, S.R. (2011) RNA mimics of green fluorescent protein. Science, 333, 642-646.
-
(2011)
Science
, vol.333
, pp. 642-646
-
-
Paige, J.S.1
Wu, K.Y.2
Jaffrey, S.R.3
-
19
-
-
84888883550
-
A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat-containing RNA
-
Strack, R.L., Disney, M.D. and Jaffrey, S.R. (2013) A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat-containing RNA. Nat. Methods, 10, 1219-1224.
-
(2013)
Nat. Methods
, vol.10
, pp. 1219-1224
-
-
Strack, R.L.1
Disney, M.D.2
Jaffrey, S.R.3
-
20
-
-
84891715447
-
Using Spinach-based sensors for fluorescence imaging of intracellular metabolites and proteins in living bacteria
-
Strack, R.L., Song, W. and Jaffrey, S.R. (2014) Using Spinach-based sensors for fluorescence imaging of intracellular metabolites and proteins in living bacteria. Nat. Protoc., 9, 146-155.
-
(2014)
Nat. Protoc.
, vol.9
, pp. 146-155
-
-
Strack, R.L.1
Song, W.2
Jaffrey, S.R.3
-
21
-
-
84903185410
-
Live-cell imaging of Pol II promoter activity to monitor gene expression with RNA IMAGEtag reporters
-
Shin, I., Ray, J., Gupta, V., Ilgu, M., Beasley, J., Bendickson, L., Mehanovic, S., Kraus, G.A. and Nilsen-Hamilton, M. (2014) Live-cell imaging of Pol II promoter activity to monitor gene expression with RNA IMAGEtag reporters. Nucleic Acids Res., 42, e90.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. e90
-
-
Shin, I.1
Ray, J.2
Gupta, V.3
Ilgu, M.4
Beasley, J.5
Bendickson, L.6
Mehanovic, S.7
Kraus, G.A.8
Nilsen-Hamilton, M.9
-
22
-
-
84889649107
-
Contact-mediated quenching for RNA imaging in bacteria with a fluorophore-binding aptamer
-
Sunbul, M. and Jäschke, A. (2013) Contact-mediated quenching for RNA imaging in bacteria with a fluorophore-binding aptamer. Angew. Chem., Int. Ed., 52, 13401-13404.
-
(2013)
Angew. Chem., Int. Ed.
, vol.52
, pp. 13401-13404
-
-
Sunbul, M.1
Jäschke, A.2
-
23
-
-
0037134940
-
Intramolecular dimers: A new strategy to fluorescence quenching in dual-labeled oligonucleotide probes
-
Johansson, M.K., Fidder, H., Dick, D. and Cook, R.M. (2002) Intramolecular dimers: a new strategy to fluorescence quenching in dual-labeled oligonucleotide probes. J. Am. Chem. Soc., 124, 6950-6956.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 6950-6956
-
-
Johansson, M.K.1
Fidder, H.2
Dick, D.3
Cook, R.M.4
-
24
-
-
79953684293
-
Small-molecule fluorescent probes for specific RNA targets
-
Murata, A., Sato, S., Kawazoe, Y. and Uesugi, M. (2011) Small-molecule fluorescent probes for specific RNA targets. Chem. Commun. (Camb.), 47, 4712-4714.
-
(2011)
Chem. Commun. (Camb.)
, vol.47
, pp. 4712-4714
-
-
Murata, A.1
Sato, S.2
Kawazoe, Y.3
Uesugi, M.4
-
25
-
-
34247523672
-
Fluorescent sensors for specific RNA: A general paradigm using chemistry and combinatorial biology
-
Sparano, B.A. and Koide, K. (2007) Fluorescent sensors for specific RNA: a general paradigm using chemistry and combinatorial biology. J. Am. Chem. Soc., 129, 4785-4794.
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 4785-4794
-
-
Sparano, B.A.1
Koide, K.2
-
26
-
-
77957654651
-
Turn-on fluorescence switch involving aggregation and elimination processes for beta-lactamase-tag
-
Sadhu, K.K., Mizukami, S., Watanabe, S. and Kikuchi, K. (2010) Turn-on fluorescence switch involving aggregation and elimination processes for beta-lactamase-tag. Chem. Commun. (Camb.), 46, 7403-7405.
-
(2010)
Chem. Commun. (Camb.)
, vol.46
, pp. 7403-7405
-
-
Sadhu, K.K.1
Mizukami, S.2
Watanabe, S.3
Kikuchi, K.4
-
27
-
-
67849103759
-
IC50-to-Ki: A web-based tool for converting IC50 to Ki values for inhibitors of enzyme activity and ligand binding
-
Cer, R.Z., Mudunuri, U., Stephens, R. and Lebeda, F.J. (2009) IC50-to-Ki: a web-based tool for converting IC50 to Ki values for inhibitors of enzyme activity and ligand binding. Nucleic Acids Res., 37, W441-W445.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. W441-W445
-
-
Cer, R.Z.1
Mudunuri, U.2
Stephens, R.3
Lebeda, F.J.4
-
28
-
-
0346599879
-
Rhodamine B and rhodamine 101 as reference substances for fluorescence quantum yield measurements
-
Karstens, T. and Kobs, K. (1980) Rhodamine B and rhodamine 101 as reference substances for fluorescence quantum yield measurements. J. Phys. Chem., 84, 1871-1872.
-
(1980)
J. Phys. Chem.
, vol.84
, pp. 1871-1872
-
-
Karstens, T.1
Kobs, K.2
-
29
-
-
0001433022
-
Fluorescence quantum yields and their relation to lifetimes of rhodamine 6G and fluorescein in nine solvents: Improved absolute standards for quantum yields
-
Magde, D., Wong, R. and Seybold, P.G. (2002) Fluorescence quantum yields and their relation to lifetimes of rhodamine 6G and fluorescein in nine solvents: improved absolute standards for quantum yields. Photochem. Photobiol., 75, 327-334.
-
(2002)
Photochem. Photobiol.
, vol.75
, pp. 327-334
-
-
Magde, D.1
Wong, R.2
Seybold, P.G.3
-
30
-
-
3042814814
-
Corrected emission spectra and quantum yields for a series of fluorescent compounds in the visible spectral region
-
Velapoldi, R.A. and Tonnesen, H.H. (2004) Corrected emission spectra and quantum yields for a series of fluorescent compounds in the visible spectral region. J. Fluoresc., 14, 465-472.
-
(2004)
J. Fluoresc.
, vol.14
, pp. 465-472
-
-
Velapoldi, R.A.1
Tonnesen, H.H.2
-
31
-
-
34547659860
-
Recombinant RNA technology: The tRNA scaffold
-
Ponchon, L. and Dardel, F. (2007) Recombinant RNA technology: the tRNA scaffold. Nat. Methods, 4, 571-576.
-
(2007)
Nat. Methods
, vol.4
, pp. 571-576
-
-
Ponchon, L.1
Dardel, F.2
-
32
-
-
0037015034
-
Isolation of high-affinity GTP aptamers from partially structured RNA libraries
-
Davis, J.H. and Szostak, J.W. (2002) Isolation of high-affinity GTP aptamers from partially structured RNA libraries. Proc. Natl. Acad. Sci. U.S.A., 99, 11616-11621.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 11616-11621
-
-
Davis, J.H.1
Szostak, J.W.2
-
33
-
-
84922031746
-
Live-cell imaging of endogenous mRNAs with a small molecule
-
Sato, S.-i., Watanabe, M., Katsuda, Y., Murata, A., Wang, D.O. and Uesugi, M. (2015) Live-Cell Imaging of Endogenous mRNAs with a Small Molecule. Angew. Chem., Int. Ed., 54, 1855-1858.
-
(2015)
Angew. Chem., Int. Ed.
, vol.54
, pp. 1855-1858
-
-
Sato, S.-I.1
Watanabe, M.2
Katsuda, Y.3
Murata, A.4
Wang, D.O.5
Uesugi, M.6
-
34
-
-
77954242830
-
Spatial organization of the flow of genetic information in bacteria
-
Montero Llopis, P., Jackson, A.F., Sliusarenko, O., Surovtsev, I., Heinritz, J., Emonet, T. and Jacobs-Wagner, C. (2010) Spatial organization of the flow of genetic information in bacteria. Nature, 466, 77-81.
-
(2010)
Nature
, vol.466
, pp. 77-81
-
-
Montero Llopis, P.1
Jackson, A.F.2
Sliusarenko, O.3
Surovtsev, I.4
Heinritz, J.5
Emonet, T.6
Jacobs-Wagner, C.7
-
35
-
-
79957469880
-
Analysis of RNA localization and metabolism in single live bacterial cells: Achievements and challenges
-
Broude, N.E. (2011) Analysis of RNA localization and metabolism in single live bacterial cells: achievements and challenges. Mol. Microbiol., 80, 1137-1147.
-
(2011)
Mol. Microbiol.
, vol.80
, pp. 1137-1147
-
-
Broude, N.E.1
-
36
-
-
3843126332
-
RNA dynamics in live Escherichia coli cells
-
Golding, I. and Cox, E.C. (2004) RNA dynamics in live Escherichia coli cells. Proc. Natl. Acad. Sci. U.S.A., 101, 11310-11315.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 11310-11315
-
-
Golding, I.1
Cox, E.C.2
-
37
-
-
84873413265
-
Single-molecule analysis of gene expression using two-color RNA labeling in live yeast
-
Hocine, S., Raymond, P., Zenklusen, D., Chao, J.A. and Singer, R.H. (2013) Single-molecule analysis of gene expression using two-color RNA labeling in live yeast. Nat. Methods, 10, 119-121.
-
(2013)
Nat. Methods
, vol.10
, pp. 119-121
-
-
Hocine, S.1
Raymond, P.2
Zenklusen, D.3
Chao, J.A.4
Singer, R.H.5
-
38
-
-
84891933783
-
Background free imaging of single mRNAs in live cells using split fluorescent proteins
-
Wu, B., Chen, J. and Singer, R.H. (2014) Background free imaging of single mRNAs in live cells using split fluorescent proteins. Sci. Rep., 4, 3615.
-
(2014)
Sci. Rep.
, vol.4
, pp. 3615
-
-
Wu, B.1
Chen, J.2
Singer, R.H.3
|