-
1
-
-
84863986133
-
Functions of DNA methylation: Islands, start sites, gene bodies and beyond
-
Jones, P. A. Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat. Rev. Genet. 13, 484-492 (2012).
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 484-492
-
-
Jones, P.A.1
-
2
-
-
84886860116
-
TET enzymes, TDG and the dynamics of DNA demethylation
-
Kohli, R. M., Zhang, Y. TET enzymes, TDG and the dynamics of DNA demethylation. Nature 502, 472-479 (2013).
-
(2013)
Nature
, vol.502
, pp. 472-479
-
-
Kohli, R.M.1
Zhang, Y.2
-
3
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl, B. D., Allis, C. D. The language of covalent histone modifications. Nature 403, 41-45 (2000).
-
(2000)
Nature
, vol.403
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
4
-
-
84904541089
-
Interpreting the language of histone and DNA modifications
-
Rothbart, S. B., Strahl, B. D. Interpreting the language of histone and DNA modifications. Biochim. Biophys. Acta 1839, 627-643 (2014).
-
(2014)
Biochim. Biophys. Acta
, vol.1839
, pp. 627-643
-
-
Rothbart, S.B.1
Strahl, B.D.2
-
5
-
-
78651335915
-
The RNA modification database RNAMDB: 2011 update
-
Cantara, W. A. et al. The RNA modification database, RNAMDB: 2011 update. Nucleic Acids Res. 39, 195-201 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 195-201
-
-
Cantara, W.A.1
-
6
-
-
84860779086
-
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
-
Dominissini, D. et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature 485, 201-206 (2012).
-
(2012)
Nature
, vol.485
, pp. 201-206
-
-
Dominissini, D.1
-
7
-
-
84862649489
-
Comprehensive analysis of mRNA methylation reveals enrichment in 30 UTRs and near stop codons
-
Meyer, K. D. et al. Comprehensive analysis of mRNA methylation reveals enrichment in 30 UTRs and near stop codons. Cell 149, 1635-1646 (2012).
-
(2012)
Cell
, vol.149
, pp. 1635-1646
-
-
Meyer, K.D.1
-
8
-
-
84898814417
-
Gene expression regulation mediated through reversible m6A RNA methylation
-
Fu, Y., Dominissini, D., Rechavi, G., He, C. Gene expression regulation mediated through reversible m6A RNA methylation. Nat. Rev. Genet. 15, 293-306 (2014).
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 293-306
-
-
Fu, Y.1
Dominissini, D.2
Rechavi, G.3
He, C.4
-
9
-
-
0030712151
-
Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase
-
Bokar, J. A., Shambaugh, M. E., Polayes, D., Matera, A. G., Rottman, F. M. Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase. RNA 3, 1233-1247 (1997).
-
(1997)
RNA
, vol.3
, pp. 1233-1247
-
-
Bokar, J.A.1
Shambaugh, M.E.2
Polayes, D.3
Matera, A.G.4
Rottman, F.M.5
-
10
-
-
84897110592
-
A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation
-
Liu, J. et al. A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation. Nat. Chem. Biol. 10, 93-95 (2014).
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 93-95
-
-
Liu, J.1
-
11
-
-
84893746230
-
Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase
-
Ping, X.-L. et al. Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase. Cell Res. 24, 177-189 (2014).
-
(2014)
Cell Res.
, vol.24
, pp. 177-189
-
-
Ping, X.-L.1
-
12
-
-
81355146483
-
N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
-
Jia, G. et al. N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO. Nat. Chem. Biol. 7, 885-887 (2011).
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 885-887
-
-
Jia, G.1
-
13
-
-
84872274463
-
ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility
-
Zheng, G. et al. ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility. Mol. Cell 49, 18-29 (2013).
-
(2013)
Mol. Cell
, vol.49
, pp. 18-29
-
-
Zheng, G.1
-
14
-
-
84919457819
-
M6A RNA modification controls cell fate transition in mammalian embryonic stem cells
-
Batista, P. J. et al. m6A RNA modification controls cell fate transition in mammalian embryonic stem cells. Cell Stem Cell 15, 707-719 (2014).
-
(2014)
Cell Stem Cell
, vol.15
, pp. 707-719
-
-
Batista, P.J.1
-
15
-
-
84922342926
-
M6A mRNA methylation facilitates resolution of nave pluripotency toward differentiation
-
Geula, S. et al. m6A mRNA methylation facilitates resolution of nave pluripotency toward differentiation. Science 347, 1002-1006 (2015).
-
(2015)
Science
, vol.347
, pp. 1002-1006
-
-
Geula, S.1
-
16
-
-
84893310526
-
N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells
-
Wang, Y. et al. N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells. Nat. Cell Biol. 16, 191-198 (2014).
-
(2014)
Nat. Cell Biol.
, vol.16
, pp. 191-198
-
-
Wang, Y.1
-
17
-
-
84924283323
-
M6A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency
-
Chen, T. et al. m6A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency. Cell Stem Cell 16, 1-13 (2015).
-
(2015)
Cell Stem Cell
, vol.16
, pp. 1-13
-
-
Chen, T.1
-
18
-
-
84880916638
-
The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry
-
Hess, M. E. et al. The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry. Nat. Neurosci. 16, 1042-1048 (2013).
-
(2013)
Nat. Neurosci.
, vol.16
, pp. 1042-1048
-
-
Hess, M.E.1
-
19
-
-
84887875528
-
RNA-methylation-dependent RNA processing controls the speed of the circadian clock
-
Fustin, J.-M. et al. RNA-methylation-dependent RNA processing controls the speed of the circadian clock. Cell 155, 793-806 (2013).
-
(2013)
Cell
, vol.155
, pp. 793-806
-
-
Fustin, J.-M.1
-
20
-
-
84890107723
-
High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis
-
Schwartz, S. et al. High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis. Cell 155, 1409-1421 (2013).
-
(2013)
Cell
, vol.155
, pp. 1409-1421
-
-
Schwartz, S.1
-
21
-
-
80052601644
-
Drosophila Inducer of MEiosis 4 (IME4) is required for Notch signaling during oogenesis
-
Hongay, C. F., Orr-Weaver, T. L. Drosophila Inducer of MEiosis 4 (IME4) is required for Notch signaling during oogenesis. Proc. Natl Acad. Sci. USA 108, 14855-14860 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 14855-14860
-
-
Hongay, C.F.1
Orr-Weaver, T.L.2
-
22
-
-
84892372347
-
N6-methyladenosine-dependent regulation of messenger RNA stability
-
Wang, X. et al. N6-methyladenosine-dependent regulation of messenger RNA stability. Nature 505, 117-120 (2014).
-
(2014)
Nature
, vol.505
, pp. 117-120
-
-
Wang, X.1
-
23
-
-
77952002827
-
The YTH domain is a novel RNA binding domain
-
Zhang, Z. et al. The YTH domain is a novel RNA binding domain. J. Biol. Chem. 285, 14701-14710 (2010).
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 14701-14710
-
-
Zhang, Z.1
-
24
-
-
84927578754
-
Crystal structure of the YTH domain of YTHDF2 reveals mechanism for recognition of N6-methyladenosine
-
Zhu, T. et al. Crystal structure of the YTH domain of YTHDF2 reveals mechanism for recognition of N6-methyladenosine. Cell Res. 24, 1493-1496 (2014).
-
(2014)
Cell Res.
, vol.24
, pp. 1493-1496
-
-
Zhu, T.1
-
25
-
-
84927581675
-
Structure of the YTH domain of human YTHDF2 in complex with an m6A mononucleotide reveals an aromatic cage for m6A recognition
-
Li, F., Zhao, D., Wu, J., Shi, Y. Structure of the YTH domain of human YTHDF2 in complex with an m6A mononucleotide reveals an aromatic cage for m6A recognition. Cell Res. 24, 1490-1492 (2014).
-
(2014)
Cell Res.
, vol.24
, pp. 1490-1492
-
-
Li, F.1
Zhao, D.2
Wu, J.3
Shi, Y.4
-
26
-
-
84958624251
-
Nuclear m6A reader YTHDC1 regulates mRNA splicing
-
Xiao, W. et al. Nuclear m6A reader YTHDC1 regulates mRNA splicing. Mol. Cell 61, 507-519 (2016).
-
(2016)
Mol. Cell
, vol.61
, pp. 507-519
-
-
Xiao, W.1
-
27
-
-
84941424170
-
HNRNPA2B1 is a mediator of m6A-dependent nuclear RNA processing events
-
Alarcó, C. R. et al. HNRNPA2B1 is a mediator of m6A-dependent nuclear RNA processing events. Cell 162, 1-10 (2015).
-
(2015)
Cell
, vol.162
, pp. 1-10
-
-
Alarcó, C.R.1
-
28
-
-
84924072927
-
N6-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions
-
Liu, N. et al. N6-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions. Nature 518, 560-564 (2015).
-
(2015)
Nature
, vol.518
, pp. 560-564
-
-
Liu, N.1
-
29
-
-
84930621650
-
N6-methyladenosine modulates messenger RNA translation efficiency
-
Wang, X. et al. N6-methyladenosine modulates messenger RNA translation efficiency. Cell 161, 1388-1399 (2015).
-
(2015)
Cell
, vol.161
, pp. 1388-1399
-
-
Wang, X.1
-
30
-
-
84963983880
-
The m6A methyltransferase METTL3 promotes translation in human cancer cells
-
Lin, S., Choe, J., Du, P., Triboulet, R., Gregory, R. I. The m6A methyltransferase METTL3 promotes translation in human cancer cells. Mol. Cell 62, 335-345 (2016).
-
(2016)
Mol. Cell
, vol.62
, pp. 335-345
-
-
Lin, S.1
Choe, J.2
Du, P.3
Triboulet, R.4
Gregory, R.I.5
-
31
-
-
84946228509
-
50 UTR m6A promotes Cap-independent translation
-
Meyer, K. D. et al. 50 UTR m6A promotes Cap-independent translation. Cell 163, 999-1010 (2015).
-
(2015)
Cell
, vol.163
, pp. 999-1010
-
-
Meyer, K.D.1
-
32
-
-
33847771442
-
The highways and byways of mRNA decay
-
Garneau, N. L., Wilusz, J., Wilusz, C. J. The highways and byways of mRNA decay. Nat. Rev. Mol. Cell Biol. 8, 113-126 (2007).
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 113-126
-
-
Garneau, N.L.1
Wilusz, J.2
Wilusz, C.J.3
-
33
-
-
33645119514
-
MicroRNAs direct rapid deadenylation of mRNA
-
Wu, L., Fan, J., Belasco, J. G. MicroRNAs direct rapid deadenylation of mRNA. Proc. Natl Acad. Sci. USA 103, 4034-4039 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 4034-4039
-
-
Wu, L.1
Fan, J.2
Belasco, J.G.3
-
34
-
-
27144475302
-
Micro-RNA regulation of the mammalian lin-28 gene during neuronal differentiation of embryonal carcinoma cells
-
Wu, L., Belasco, J. G. Micro-RNA regulation of the mammalian lin-28 gene during neuronal differentiation of embryonal carcinoma cells. Mol. Cell. Biol. 25, 9198-9208 (2005).
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 9198-9208
-
-
Wu, L.1
Belasco, J.G.2
-
35
-
-
33645124258
-
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
-
Giraldez, A. J. et al. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 312, 75-79 (2006).
-
(2006)
Science
, vol.312
, pp. 75-79
-
-
Giraldez, A.J.1
-
36
-
-
0038751970
-
Tristetraprolin and its family members can promote the cell-free deadenylation of AU-rich element-containing mRNAs by poly(A) ribonuclease
-
Lai, W. S., Kennington, E. A., Blackshear, P. J. Tristetraprolin and its family members can promote the cell-free deadenylation of AU-rich element-containing mRNAs by poly(A) ribonuclease. Mol. Cell. Biol. 23, 3798-3812 (2003).
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 3798-3812
-
-
Lai, W.S.1
Kennington, E.A.2
Blackshear, P.J.3
-
37
-
-
2942612333
-
A KH domain RNA binding protein, KSRP, promotes ARE-directed mRNA turnover by recruiting the degradation machinery
-
Gherzi, R. et al. A KH domain RNA binding protein, KSRP, promotes ARE-directed mRNA turnover by recruiting the degradation machinery. Mol. Cell 14, 571-583 (2004).
-
(2004)
Mol. Cell
, vol.14
, pp. 571-583
-
-
Gherzi, R.1
-
38
-
-
1642523679
-
Facilitation of mRNA deadenylation and decay by the exosome-bound DExH protein RHAU
-
Tran, H., Schilling, M., Wirbelauer, C., Hess, D., Nagamine, Y. Facilitation of mRNA deadenylation and decay by the exosome-bound, DExH protein RHAU. Mol. Cell 13, 101-111 (2004).
-
(2004)
Mol. Cell
, vol.13
, pp. 101-111
-
-
Tran, H.1
Schilling, M.2
Wirbelauer, C.3
Hess, D.4
Nagamine, Y.5
-
39
-
-
13244298460
-
Recruitment and activation of mRNA decay enzymes by two ARE-mediated decay activation domains in the proteins TTP and BRF-1
-
Lykke-Andersen, J., Wagner, E. Recruitment and activation of mRNA decay enzymes by two ARE-mediated decay activation domains in the proteins TTP and BRF-1. Genes Dev. 19, 351-361 (2005).
-
(2005)
Genes Dev.
, vol.19
, pp. 351-361
-
-
Lykke-Andersen, J.1
Wagner, E.2
-
40
-
-
33646875518
-
CUG-BP binds to RNA substrates and recruits PARN deadenylase
-
Moraes, K. C. M., Wilusz, C. J., Wilusz, J. CUG-BP binds to RNA substrates and recruits PARN deadenylase. RNA 12, 1084-1091 (2006).
-
(2006)
RNA
, vol.12
, pp. 1084-1091
-
-
Moraes, K.C.M.1
Wilusz, C.J.2
Wilusz, J.3
-
41
-
-
70249110072
-
Human Ccr4-Not complexes contain variable deadenylase subunits
-
Lau, N.-C. et al. Human Ccr4-Not complexes contain variable deadenylase subunits. Biochem. J. 422, 443-453 (2009).
-
(2009)
Biochem. J.
, vol.422
, pp. 443-453
-
-
Lau, N.-C.1
-
42
-
-
2942532990
-
Positive and negative regulation of poly(A) nuclease
-
Mangus, D. A. et al. Positive and negative regulation of poly(A) nuclease. Mol. Cell. Biol. 24, 5521-5533 (2004).
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 5521-5533
-
-
Mangus, D.A.1
-
43
-
-
28644436520
-
Structural insight into poly(A) binding and catalytic mechanism of human PARN
-
Wu, M. et al. Structural insight into poly(A) binding and catalytic mechanism of human PARN. EMBO J. 24, 4082-4093 (2005).
-
(2005)
EMBO J.
, vol.24
, pp. 4082-4093
-
-
Wu, M.1
-
44
-
-
3042803133
-
Targeted mRNA degradation by deadenylation-independent decapping
-
Badis, G., Saveanu, C., Fromont-Racine, M., Jacquier, A. Targeted mRNA degradation by deadenylation-independent decapping. Mol. Cell 15, 5-15 (2004).
-
(2004)
Mol. Cell
, vol.15
, pp. 5-15
-
-
Badis, G.1
Saveanu, C.2
Fromont-Racine, M.3
Jacquier, A.4
-
45
-
-
16344395154
-
The yeast EDC1 mRNA undergoes deadenylationindependent decapping stimulated by Not2p Not4p and Not5p
-
Muhlrad, D., Parker, R. The yeast EDC1 mRNA undergoes deadenylationindependent decapping stimulated by Not2p, Not4p, and Not5p. EMBO J. 24, 1033-1045 (2005).
-
(2005)
EMBO J.
, vol.24
, pp. 1033-1045
-
-
Muhlrad, D.1
Parker, R.2
-
46
-
-
0035905766
-
Role for a bidentate ribonuclease in the initiation step of RNA interference
-
Bernstein, E., Caudy, A. A., Hammond, S. M., Hannon, G. J. Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409, 363-366 (2001).
-
(2001)
Nature
, vol.409
, pp. 363-366
-
-
Bernstein, E.1
Caudy, A.A.2
Hammond, S.M.3
Hannon, G.J.4
-
47
-
-
2942595765
-
Nonsense-mediated messenger RNA decay is initiated by endonucleolytic cleavage in Drosophila
-
Gatfield, D., Izaurralde, E. Nonsense-mediated messenger RNA decay is initiated by endonucleolytic cleavage in Drosophila. Nature 429, 575-578 (2004).
-
(2004)
Nature
, vol.429
, pp. 575-578
-
-
Gatfield, D.1
Izaurralde, E.2
-
48
-
-
84934283817
-
MicroRNA-mediated repression of nonsense mRNAs
-
Zhao, Y. et al. MicroRNA-mediated repression of nonsense mRNAs. Elife 3, e03032 (2014).
-
(2014)
Elife
, vol.3
, pp. e03032
-
-
Zhao, Y.1
-
49
-
-
0031024660
-
Analysis of bacteriophage N protein and peptide binding to boxB RNA using polyacrylamide gel coelectrophoresis (PACE)
-
Cilley, C. D., Williamson, J. R. Analysis of bacteriophage N protein and peptide binding to boxB RNA using polyacrylamide gel coelectrophoresis (PACE). RNA 3, 57-67 (1997).
-
(1997)
RNA
, vol.3
, pp. 57-67
-
-
Cilley, C.D.1
Williamson, J.R.2
-
50
-
-
84888423912
-
Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA
-
Liu, N. et al. Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA. RNA 19, 1848-1856 (2013).
-
(2013)
RNA
, vol.19
, pp. 1848-1856
-
-
Liu, N.1
-
51
-
-
84892164576
-
A novel protein, Pho92, has a conserved YTH domain and regulates phosphate metabolism by decreasing the mRNA stability of PHO4 in Saccharomyces cerevisiae
-
Kang, H.-J. et al. A novel protein, Pho92, has a conserved YTH domain and regulates phosphate metabolism by decreasing the mRNA stability of PHO4 in Saccharomyces cerevisiae. Biochem. J. 457, 391-400 (2014).
-
(2014)
Biochem. J.
, vol.457
, pp. 391-400
-
-
Kang, H.-J.1
-
52
-
-
84874586399
-
NOT10 and C2orf29/NOT11 form a conserved module of the CCR4-NOT complex that docks onto the NOT1 N-terminal domain
-
Bawankar, P., Loh, B., Wohlbold, L., Schmidt, S., Izaurralde, E. NOT10 and C2orf29/NOT11 form a conserved module of the CCR4-NOT complex that docks onto the NOT1 N-terminal domain. RNA Biol. 10, 228-244 (2013).
-
(2013)
RNA Biol.
, vol.10
, pp. 228-244
-
-
Bawankar, P.1
Loh, B.2
Wohlbold, L.3
Schmidt, S.4
Izaurralde, E.5
-
53
-
-
84868094761
-
Architecture of the nuclease module of the yeast ccr4-Not complex: The not1-caf1-ccr4 interaction
-
Basquin, J. et al. Architecture of the nuclease module of the yeast ccr4-Not complex: the not1-caf1-ccr4 interaction. Mol. Cell 48, 207-218 (2012).
-
(2012)
Mol. Cell
, vol.48
, pp. 207-218
-
-
Basquin, J.1
-
54
-
-
84887455870
-
Structure and assembly of the NOT module of the human CCR4-NOT complex
-
Boland, A. et al. Structure and assembly of the NOT module of the human CCR4-NOT complex. Nat. Struct. Mol. Biol. 20, 1289-1297 (2013).
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 1289-1297
-
-
Boland, A.1
-
55
-
-
84921512407
-
High-resolution N6-methyladenosine (m6A) map using photo-crosslinking-assisted m6A sequencing
-
Chen, K. et al. High-resolution N6-methyladenosine (m6A) map using photo-crosslinking-assisted m6A sequencing. Angew. Chem. Int. Ed. 54, 1587-1590 (2015).
-
(2015)
Angew. Chem. Int. Ed.
, vol.54
, pp. 1587-1590
-
-
Chen, K.1
-
56
-
-
77749334621
-
CCR4-NOT deadenylates mRNA associated with RNA-induced silencing complexes in human cells
-
Piao, X., Zhang, X., Wu, L., Belasco, J. G. CCR4-NOT deadenylates mRNA associated with RNA-induced silencing complexes in human cells. Mol. Cell. Biol. 30, 1486-1494 (2010).
-
(2010)
Mol. Cell. Biol.
, vol.30
, pp. 1486-1494
-
-
Piao, X.1
Zhang, X.2
Wu, L.3
Belasco, J.G.4
-
57
-
-
84872032385
-
Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing
-
Dominissini, D., Moshitch-Moshkovitz, S., Salmon-Divon, M., Amariglio, N., Rechavi, G. Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing. Nat. Protoc. 8, 176-189 (2013).
-
(2013)
Nat. Protoc.
, vol.8
, pp. 176-189
-
-
Dominissini, D.1
Moshitch-Moshkovitz, S.2
Salmon-Divon, M.3
Amariglio, N.4
Rechavi, G.5
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