메뉴 건너뛰기




Volumn 16, Issue 1, 2016, Pages

A comparison between quantitative PCR and droplet digital PCR technologies for circulating microRNA quantification in human lung cancer

Author keywords

Droplet digital PCR; Lung cancer; MicroRNAs; QPCR; Serum biomarkers

Indexed keywords

BIOLOGICAL ORGANS; BIOMARKERS; BODY FLUIDS; DISEASES; DROPS; POLYMERASE CHAIN REACTION; REGRESSION ANALYSIS;

EID: 84982245188     PISSN: None     EISSN: 14726750     Source Type: Journal    
DOI: 10.1186/s12896-016-0292-7     Document Type: Article
Times cited : (109)

References (47)
  • 3
    • 84895834531 scopus 로고    scopus 로고
    • Screening for lung cancer: moving into a new era
    • Detterbeck FC, Unger M. Screening for lung cancer: moving into a new era. Ann Intern Med. 2014;160(5):363-4.
    • (2014) Ann Intern Med , vol.160 , Issue.5 , pp. 363-364
    • Detterbeck, F.C.1    Unger, M.2
  • 4
    • 84884910140 scopus 로고    scopus 로고
    • Chest X-ray screening for lung cancer: overdiagnosis, endpoints, and randomized population trials
    • Strauss GM, Dominioni L. Chest X-ray screening for lung cancer: overdiagnosis, endpoints, and randomized population trials. J Surg Oncol. 2013;108(5):294-300.
    • (2013) J Surg Oncol , vol.108 , Issue.5 , pp. 294-300
    • Strauss, G.M.1    Dominioni, L.2
  • 5
  • 6
    • 33645294070 scopus 로고    scopus 로고
    • Oncomirs - microRNAs with a role in cancer
    • Esquela-Kerscher A, Slack FJ. Oncomirs - microRNAs with a role in cancer. Nat Rev Cancer. 2006;6(4):259-69.
    • (2006) Nat Rev Cancer , vol.6 , Issue.4 , pp. 259-269
    • Esquela-Kerscher, A.1    Slack, F.J.2
  • 7
    • 84857079737 scopus 로고    scopus 로고
    • The microcosmos of cancer
    • Lujambio A, Lowe SW. The microcosmos of cancer. Nature. 2012;482(7385):347-55.
    • (2012) Nature , vol.482 , Issue.7385 , pp. 347-355
    • Lujambio, A.1    Lowe, S.W.2
  • 8
    • 58849093262 scopus 로고    scopus 로고
    • Revisiting the principles of microRNA target recognition and mode of action
    • Brodersen P, Voinnet O. Revisiting the principles of microRNA target recognition and mode of action. Nat Rev Mol Cell Biol. 2009;10(2):141-8.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , Issue.2 , pp. 141-148
    • Brodersen, P.1    Voinnet, O.2
  • 10
    • 34249302620 scopus 로고    scopus 로고
    • Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells
    • Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO. Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat Cell Biol. 2007;9(6):654-9.
    • (2007) Nat Cell Biol , vol.9 , Issue.6 , pp. 654-659
    • Valadi, H.1    Ekstrom, K.2    Bossios, A.3    Sjostrand, M.4    Lee, J.J.5    Lotvall, J.O.6
  • 11
    • 79953301730 scopus 로고    scopus 로고
    • MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins
    • Vickers KC, Palmisano BT, Shoucri BM, Shamburek RD, Remaley AT. MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins. Nat Cell Biol. 2011;13(4):423-33.
    • (2011) Nat Cell Biol , vol.13 , Issue.4 , pp. 423-433
    • Vickers, K.C.1    Palmisano, B.T.2    Shoucri, B.M.3    Shamburek, R.D.4    Remaley, A.T.5
  • 13
  • 15
    • 77950498821 scopus 로고    scopus 로고
    • Serum microRNA signatures identified in a genome-wide serum microRNA expression profiling predict survival of non-small-cell lung cancer
    • Hu Z, Chen X, Zhao Y, Tian T, Jin G, Shu Y, Chen Y, Xu L, Zen K, Zhang C, et al. Serum microRNA signatures identified in a genome-wide serum microRNA expression profiling predict survival of non-small-cell lung cancer. J Clin Oncol. 2010;28(10):1721-6.
    • (2010) J Clin Oncol , vol.28 , Issue.10 , pp. 1721-1726
    • Hu, Z.1    Chen, X.2    Zhao, Y.3    Tian, T.4    Jin, G.5    Shu, Y.6    Chen, Y.7    Xu, L.8    Zen, K.9    Zhang, C.10
  • 16
    • 84880305540 scopus 로고    scopus 로고
    • Evaluation of dynamic change of serum miR-21 and miR-24 in pre- and post-operative lung carcinoma patients
    • Le HB, Zhu WY, Chen DD, He JY, Huang YY, Liu XG, Zhang YK. Evaluation of dynamic change of serum miR-21 and miR-24 in pre- and post-operative lung carcinoma patients. Med Oncol. 2012;29(5):3190-7.
    • (2012) Med Oncol , vol.29 , Issue.5 , pp. 3190-3197
    • Le, H.B.1    Zhu, W.Y.2    Chen, D.D.3    He, J.Y.4    Huang, Y.Y.5    Liu, X.G.6    Zhang, Y.K.7
  • 17
    • 84887629698 scopus 로고    scopus 로고
    • Quantification of Plasma miRNAs by Digital PCR for Cancer Diagnosis
    • Ma J, Li N, Guarnera M, Jiang F. Quantification of Plasma miRNAs by Digital PCR for Cancer Diagnosis. Biomark Insights. 2013;8:127-36.
    • (2013) Biomark Insights , vol.8 , pp. 127-136
    • Ma, J.1    Li, N.2    Guarnera, M.3    Jiang, F.4
  • 19
    • 84885175452 scopus 로고    scopus 로고
    • Identification of plasma microRNAs as novel noninvasive biomarkers for early detection of lung cancer
    • Tang D, Shen Y, Wang M, Yang R, Wang Z, Sui A, Jiao W, Wang Y. Identification of plasma microRNAs as novel noninvasive biomarkers for early detection of lung cancer. Eur J Cancer Prev. 2013;22(6):540-8.
    • (2013) Eur J Cancer Prev , vol.22 , Issue.6 , pp. 540-548
    • Tang, D.1    Shen, Y.2    Wang, M.3    Yang, R.4    Wang, Z.5    Sui, A.6    Jiao, W.7    Wang, Y.8
  • 21
    • 79551697148 scopus 로고    scopus 로고
    • Aberrant expression of let-7a miRNA in the blood of non-small cell lung cancer patients
    • Jeong HC, Kim EK, Lee JH, Lee JM, Yoo HN, Kim JK. Aberrant expression of let-7a miRNA in the blood of non-small cell lung cancer patients. Mol Med Rep. 2011;4(2):383-7.
    • (2011) Mol Med Rep , vol.4 , Issue.2 , pp. 383-387
    • Jeong, H.C.1    Kim, E.K.2    Lee, J.H.3    Lee, J.M.4    Yoo, H.N.5    Kim, J.K.6
  • 23
    • 84872833507 scopus 로고    scopus 로고
    • Identification of circulating microRNAs as biomarkers in cancers: what have we got?
    • Sun Y, Zhang K, Fan G, Li J. Identification of circulating microRNAs as biomarkers in cancers: what have we got? Clin Chem Lab Med. 2012;50(12):2121-6.
    • (2012) Clin Chem Lab Med , vol.50 , Issue.12 , pp. 2121-2126
    • Sun, Y.1    Zhang, K.2    Fan, G.3    Li, J.4
  • 24
    • 42449098100 scopus 로고    scopus 로고
    • Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues
    • Peltier HJ, Latham GJ. Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues. RNA. 2008;14(5):844-52.
    • (2008) RNA , vol.14 , Issue.5 , pp. 844-852
    • Peltier, H.J.1    Latham, G.J.2
  • 27
    • 84920517663 scopus 로고    scopus 로고
    • Quantitative nucleic acid amplification methods for viral infections
    • Gullett JC, Nolte FS. Quantitative nucleic acid amplification methods for viral infections. Clin Chem. 2015;61(1):72-8.
    • (2015) Clin Chem , vol.61 , Issue.1 , pp. 72-78
    • Gullett, J.C.1    Nolte, F.S.2
  • 28
    • 84877768357 scopus 로고    scopus 로고
    • Relative quantification in seed GMO analysis: state of art and bottlenecks
    • Chaouachi M, Berard A, Said K. Relative quantification in seed GMO analysis: state of art and bottlenecks. Transgenic Res. 2013;22(3):461-76.
    • (2013) Transgenic Res , vol.22 , Issue.3 , pp. 461-476
    • Chaouachi, M.1    Berard, A.2    Said, K.3
  • 29
    • 84872359796 scopus 로고    scopus 로고
    • Application of quantitative PCR for the detection of microorganisms in water
    • Botes M, de Kwaadsteniet M, Cloete TE. Application of quantitative PCR for the detection of microorganisms in water. Anal Bioanal Chem. 2013;405(1):91-108.
    • (2013) Anal Bioanal Chem , vol.405 , Issue.1 , pp. 91-108
    • Botes, M.1    Kwaadsteniet, M.2    Cloete, T.E.3
  • 30
  • 32
    • 84884940357 scopus 로고    scopus 로고
    • Specific qPCR assays for the detection of orf virus, pseudocowpox virus and bovine papular stomatitis virus
    • Zhao H, Wilkins K, Damon IK, Li Y. Specific qPCR assays for the detection of orf virus, pseudocowpox virus and bovine papular stomatitis virus. J Virol Methods. 2013;194(1-2):229-34.
    • (2013) J Virol Methods , vol.194 , Issue.1-2 , pp. 229-234
    • Zhao, H.1    Wilkins, K.2    Damon, I.K.3    Li, Y.4
  • 33
    • 84904179868 scopus 로고    scopus 로고
    • Digital droplet PCR (ddPCR) for the precise quantification of human T-lymphotropic virus 1 proviral loads in peripheral blood and cerebrospinal fluid of HAM/TSP patients and identification of viral mutations
    • Brunetto GS, Massoud R, Leibovitch EC, Caruso B, Johnson K, Ohayon J, Fenton K, Cortese I, Jacobson S. Digital droplet PCR (ddPCR) for the precise quantification of human T-lymphotropic virus 1 proviral loads in peripheral blood and cerebrospinal fluid of HAM/TSP patients and identification of viral mutations. J Neurovirol. 2014;20(4):341-51.
    • (2014) J Neurovirol , vol.20 , Issue.4 , pp. 341-351
    • Brunetto, G.S.1    Massoud, R.2    Leibovitch, E.C.3    Caruso, B.4    Johnson, K.5    Ohayon, J.6    Fenton, K.7    Cortese, I.8    Jacobson, S.9
  • 34
  • 35
    • 84929619890 scopus 로고    scopus 로고
    • Reverse transcriptase droplet digital PCR shows high resilience to PCR inhibitors from plant, soil and water samples
    • Racki N, Dreo T, Gutierrez-Aguirre I, Blejec A, Ravnikar M. Reverse transcriptase droplet digital PCR shows high resilience to PCR inhibitors from plant, soil and water samples. Plant Methods. 2014;10(1):42.
    • (2014) Plant Methods , vol.10 , Issue.1 , pp. 42
    • Racki, N.1    Dreo, T.2    Gutierrez-Aguirre, I.3    Blejec, A.4    Ravnikar, M.5
  • 37
    • 84928911681 scopus 로고    scopus 로고
    • Droplet digital polymerase chain reaction (PCR) outperforms real-time PCR in the detection of environmental DNA from an invasive fish species
    • Doi H, Takahara T, Minamoto T, Matsuhashi S, Uchii K, Yamanaka H. Droplet digital polymerase chain reaction (PCR) outperforms real-time PCR in the detection of environmental DNA from an invasive fish species. Environ Sci Technol. 2015;49(9):5601-8.
    • (2015) Environ Sci Technol , vol.49 , Issue.9 , pp. 5601-5608
    • Doi, H.1    Takahara, T.2    Minamoto, T.3    Matsuhashi, S.4    Uchii, K.5    Yamanaka, H.6
  • 40
    • 84907809960 scopus 로고    scopus 로고
    • The validity of circulating microRNAs in oncology: five years of challenges and contradictions
    • Jarry J, Schadendorf D, Greenwood C, Spatz A, van Kempen LC. The validity of circulating microRNAs in oncology: five years of challenges and contradictions. Mol Oncol. 2014;8(4):819-29.
    • (2014) Mol Oncol , vol.8 , Issue.4 , pp. 819-829
    • Jarry, J.1    Schadendorf, D.2    Greenwood, C.3    Spatz, A.4    Kempen, L.C.5
  • 43
    • 84961208344 scopus 로고    scopus 로고
    • Considerations for optimization of microRNA PCR assays for molecular diagnosis
    • Dellett M, Simpson DA. Considerations for optimization of microRNA PCR assays for molecular diagnosis. Expert Rev Mol Diagn. 2016;16(4):407-14.
    • (2016) Expert Rev Mol Diagn , vol.16 , Issue.4 , pp. 407-414
    • Dellett, M.1    Simpson, D.A.2
  • 44
    • 84920545307 scopus 로고    scopus 로고
    • Considerations for digital PCR as an accurate molecular diagnostic tool
    • Huggett JF, Cowen S, Foy CA. Considerations for digital PCR as an accurate molecular diagnostic tool. Clin Chem. 2015;61(1):79-88.
    • (2015) Clin Chem , vol.61 , Issue.1 , pp. 79-88
    • Huggett, J.F.1    Cowen, S.2    Foy, C.A.3
  • 46
    • 84919338323 scopus 로고    scopus 로고
    • Quantification of circulating miRNAs by droplet digital PCR: comparison of EvaGreen- and TaqMan-based chemistries
    • Miotto E, Saccenti E, Lupini L, Callegari E, Negrini M, Ferracin M. Quantification of circulating miRNAs by droplet digital PCR: comparison of EvaGreen- and TaqMan-based chemistries. Cancer Epidemiol Biomarkers Prev. 2014;23(12):2638-42.
    • (2014) Cancer Epidemiol Biomarkers Prev , vol.23 , Issue.12 , pp. 2638-2642
    • Miotto, E.1    Saccenti, E.2    Lupini, L.3    Callegari, E.4    Negrini, M.5    Ferracin, M.6
  • 47
    • 84887039225 scopus 로고    scopus 로고
    • Tolerance of droplet-digital PCR vs real-time quantitative PCR to inhibitory substances
    • Dingle TC, Sedlak RH, Cook L, Jerome KR. Tolerance of droplet-digital PCR vs real-time quantitative PCR to inhibitory substances. Clin Chem. 2013;59(11):1670-2.
    • (2013) Clin Chem , vol.59 , Issue.11 , pp. 1670-1672
    • Dingle, T.C.1    Sedlak, R.H.2    Cook, L.3    Jerome, K.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.