메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME;

EID: 84982221220     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep31558     Document Type: Article
Times cited : (38)

References (68)
  • 1
    • 0032943919 scopus 로고    scopus 로고
    • Salt tolerance and crop potential of halophytes
    • Glenn, E. P., Brown, J. J. & Blumwald, E. Salt tolerance and crop potential of halophytes. Crit. Rev. Plant Sci. 18, 227-255 (1999).
    • (1999) Crit. Rev. Plant Sci , vol.18 , pp. 227-255
    • Glenn, E.P.1    Brown, J.J.2    Blumwald, E.3
  • 2
    • 33847658374 scopus 로고    scopus 로고
    • Identification of early salt stress response genes in tomato root by suppression subtractive hybridization and microarray analysis
    • Ouyang, B. et al. Identification of early salt stress response genes in tomato root by suppression subtractive hybridization and microarray analysis. J. Exp. Bot. 58, 507-520 (2007).
    • (2007) J. Exp. Bot , vol.58 , pp. 507-520
    • Ouyang, B.1
  • 3
    • 0029188653 scopus 로고
    • Specialized zones of development in roots
    • Ishikawa, H. & Evans, M. L. Specialized zones of development in roots. Plant Physiol. 109, 725-727 (1995).
    • (1995) Plant Physiol , vol.109 , pp. 725-727
    • Ishikawa, H.1    Evans, M.L.2
  • 4
    • 2442671858 scopus 로고    scopus 로고
    • Genetic dissection of root formation in maize (Zea mays) reveals root-type specific developmental programmes
    • Hochholdinger, F., Woll, K., Sauer, M. & Dembinsky, D. Genetic dissection of root formation in maize (Zea mays) reveals root-type specific developmental programmes. Ann. Bot. 93, 359-368 (2004).
    • (2004) Ann. Bot , vol.93 , pp. 359-368
    • Hochholdinger, F.1    Woll, K.2    Sauer, M.3    Dembinsky, D.4
  • 5
    • 0347447343 scopus 로고    scopus 로고
    • A gene expression map of the Arabidopsis root
    • Birnbaum, K. et al. A gene expression map of the Arabidopsis root. Science 302, 1956-1960 (2003).
    • (2003) Science , vol.302 , pp. 1956-1960
    • Birnbaum, K.1
  • 6
    • 38149109010 scopus 로고    scopus 로고
    • A high-resolution root spatiotemporal map reveals dominant expression patterns
    • Brady, S. M. et al. A high-resolution root spatiotemporal map reveals dominant expression patterns. Science 318, 801-806 (2007).
    • (2007) Science , vol.318 , pp. 801-806
    • Brady, S.M.1
  • 7
    • 84875483881 scopus 로고    scopus 로고
    • High-resolution metabolic mapping of cell types in plant roots
    • Moussaieff, A. et al. High-resolution metabolic mapping of cell types in plant roots. Proc. Natl. Acad. Sci. USA 110, E1232-E1241 (2013).
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. E1232-E1241
    • Moussaieff, A.1
  • 8
    • 44249114568 scopus 로고    scopus 로고
    • Cell identity mediates the response of Arabidopsis roots to salinity and iron stress
    • Dinneny J. R. et al. Cell identity mediates the response of Arabidopsis roots to salinity and iron stress. Science 320, 942-945 (2008).
    • (2008) Science , vol.320 , pp. 942-945
    • Dinneny, J.R.1
  • 10
    • 84872357793 scopus 로고    scopus 로고
    • De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity
    • Venturini, L. et al. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. BMC Genomics 14, 4 (2013).
    • (2013) BMC Genomics , vol.14 , pp. 4
    • Venturini, L.1
  • 11
    • 84955137554 scopus 로고    scopus 로고
    • Salt-stress induced alterations in the root lipidome of two barley genotypes with contrasting responses to salinity
    • Natera, S. H., Hill, C. B., Rupasinghe, T. W. & Roessner, U. Salt-stress induced alterations in the root lipidome of two barley genotypes with contrasting responses to salinity. Funct. Plant Biol. 43, 207-219 (2016).
    • (2016) Funct. Plant Biol , vol.43 , pp. 207-219
    • Natera, S.H.1    Hill, C.B.2    Rupasinghe, T.W.3    Roessner, U.4
  • 12
    • 77954520789 scopus 로고    scopus 로고
    • The response of barley to salinity stress differs between hydroponic and soil systems
    • Tavakkoli, E., Rengasamy, P. & McDonald, G. K. The response of barley to salinity stress differs between hydroponic and soil systems. Funct. Plant Biol. 37, 621-633 (2010).
    • (2010) Funct. Plant Biol , vol.37 , pp. 621-633
    • Tavakkoli, E.1    Rengasamy, P.2    McDonald, G.K.3
  • 13
    • 70349662165 scopus 로고    scopus 로고
    • Metabolic responses to salt stress of barley (Hordeum vulgare L.) cultivars, Sahara and Clipper, which differ in salinity tolerance
    • Widodo et al. Metabolic responses to salt stress of barley (Hordeum vulgare L.) cultivars, Sahara and Clipper, which differ in salinity tolerance. J. Exp. Bot. 60, 4089-4103 (2009).
    • (2009) J. Exp. Bot , vol.60 , pp. 4089-4103
    • Widodo1
  • 14
    • 79251506026 scopus 로고    scopus 로고
    • A SOS3 homologue maps to HvNax4, a barley locus controlling an environmentally sensitive Na+ exclusion trait
    • Rivandi, J. et al. A SOS3 homologue maps to HvNax4, a barley locus controlling an environmentally sensitive Na+ exclusion trait. J. Exp. Bot. 62, 1201-1216 (2011).
    • (2011) J. Exp. Bot , vol.62 , pp. 1201-1216
    • Rivandi, J.1
  • 15
    • 84878043383 scopus 로고    scopus 로고
    • Genetic variation in the root growth response of barley genotypes to salinity stress
    • Shelden, M. C., Roessner, U., Sharp, R. E., Tester, M. & Bacic, A. Genetic variation in the root growth response of barley genotypes to salinity stress. Funct. Plant Biol. 40, 516-530 (2013).
    • (2013) Funct. Plant Biol , vol.40 , pp. 516-530
    • Shelden, M.C.1    Roessner, U.2    Sharp, R.E.3    Tester, M.4    Bacic, A.5
  • 16
    • 79960264362 scopus 로고    scopus 로고
    • Trinity: Reconstructing a full-length transcriptome without a genome from RNA-Seq data
    • Grabherr, M. G. et al. Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data. Nat. Biotechnol. 29, 644-652, doi:10.1038/nbt.1883 (2011).
    • (2011) Nat. Biotechnol , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 17
    • 84880266648 scopus 로고    scopus 로고
    • De novo transcript sequence reconstruction from RNA-Seq: Reference generation and analysis with Trinity
    • Haas B. J. et al. De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity. Nat. Protoc. 8, 1494-1512, doi:10.1038/nprot.2013.084 (2013).
    • (2013) Nat. Protoc , vol.8 , pp. 1494-1512
    • Haas, B.J.1
  • 18
    • 34249848751 scopus 로고    scopus 로고
    • CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes
    • Parra, G., Bradnam, K. & Korf, I. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23, 1061-1067 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 1061-1067
    • Parra, G.1    Bradnam, K.2    Korf, I.3
  • 19
    • 84875512075 scopus 로고    scopus 로고
    • De novo transcriptome sequence assembly and analysis of RNA silencing genes of Nicotiana benthamiana
    • Nakasugi, K. et al. De novo transcriptome sequence assembly and analysis of RNA silencing genes of Nicotiana benthamiana. PloS One 8, e59534 (2013).
    • (2013) PloS One , vol.8
    • Nakasugi, K.1
  • 20
    • 84925762311 scopus 로고    scopus 로고
    • De novo characterization of fall dormant and nondormant alfalfa (Medicago sativa L.) leaf transcriptome and identification of candidate genes related to fall dormancy
    • Zhang, S. et al. De novo characterization of fall dormant and nondormant alfalfa (Medicago sativa L.) leaf transcriptome and identification of candidate genes related to fall dormancy. PloS One 10, e0122170-e0122170 (2014).
    • (2014) PloS One , vol.10 , pp. e0122170-e0122170
    • Zhang, S.1
  • 21
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-The BLAST-like alignment tool
    • Kent, W. J. BLAT-the BLAST-like alignment tool. Genome Res. 12, 656-664 (2002).
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 22
    • 84978458874 scopus 로고    scopus 로고
    • Using the basic local alignment search tool (BLAST)
    • Mount, D. W. Using the basic local alignment search tool (BLAST). Cold Spring Harb. Protoc. 2007 (7), pdb-top17 (2007).
    • (2007) Cold Spring Harb. Protoc , vol.2007 , Issue.7 , pp. pdb-top17
    • Mount, D.W.1
  • 23
    • 84938582898 scopus 로고    scopus 로고
    • OrthoFinder: Solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
    • Emms, D. M. & Kelly, S. OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy. Genome Biol. 16, 157, doi:10.1186/s13059-015-0721-2 (2015).
    • (2015) Genome Biol , vol.16 , pp. 157
    • Emms, D.M.1    Kelly, S.2
  • 24
    • 84856585935 scopus 로고    scopus 로고
    • Phytozome: A comparative platform for green plant genomics
    • Goodstein, D. M. et al. Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40 (D1), D1178-D1186 (2012).
    • (2012) Nucleic Acids Res , vol.40 , Issue.D1 , pp. D1178-D1186
    • Goodstein, D.M.1
  • 25
    • 79551572836 scopus 로고    scopus 로고
    • Root-specific transcript profiling of contrasting rice genotypes in response to salinity stress
    • Cotsaftis, O. et al. Root-specific transcript profiling of contrasting rice genotypes in response to salinity stress. Mol. Plant 4, 25-41 (2011).
    • (2011) Mol. Plant , vol.4 , pp. 25-41
    • Cotsaftis, O.1
  • 26
    • 0034724210 scopus 로고    scopus 로고
    • The Arabidopsis thaliana SOS2 gene encodes a protein kinase that is required for salt tolerance
    • Liu, J., Ishitani, M., Halfter, U., Kim, C. S. & Zhu, J. K. The Arabidopsis thaliana SOS2 gene encodes a protein kinase that is required for salt tolerance. Proc. Natl. Acad. Sci. USA. 97, 3730-3734 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 3730-3734
    • Liu, J.1    Ishitani, M.2    Halfter, U.3    Kim, C.S.4    Zhu, J.K.5
  • 27
    • 0036672264 scopus 로고    scopus 로고
    • Ectopic expression of BABY BOOM triggers a conversion from vegetative to embryonic growth
    • Boutilier, K. et al. Ectopic expression of BABY BOOM triggers a conversion from vegetative to embryonic growth. Plant Cell 14, 1737-1749 (2002).
    • (2002) Plant Cell , vol.14 , pp. 1737-1749
    • Boutilier, K.1
  • 28
    • 0141787882 scopus 로고    scopus 로고
    • Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall
    • Tanaka, K. et al. Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall. Plant Physiol. 133, 73-83 (2003).
    • (2003) Plant Physiol , vol.133 , pp. 73-83
    • Tanaka, K.1
  • 29
    • 32444442926 scopus 로고    scopus 로고
    • Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors
    • Kobayashi, Y. et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J. 44, 939-949 (2005).
    • (2005) Plant J , vol.44 , pp. 939-949
    • Kobayashi, Y.1
  • 30
    • 33751089577 scopus 로고    scopus 로고
    • The Arabidopsis tetratricopeptide repeat-containing protein TTL1 is required for osmotic stress responses and abscisic acid sensitivity
    • Rosado, A. et al. The Arabidopsis tetratricopeptide repeat-containing protein TTL1 is required for osmotic stress responses and abscisic acid sensitivity. Plant Physiol. 142, 1113-1126 (2006).
    • (2006) Plant Physiol , vol.142 , pp. 1113-1126
    • Rosado, A.1
  • 31
    • 34547339361 scopus 로고    scopus 로고
    • SDIR1 is a RING finger E3 ligase that positively regulates stress-responsive abscisic acid signaling in Arabidopsis
    • Zhang, Y. et al. SDIR1 is a RING finger E3 ligase that positively regulates stress-responsive abscisic acid signaling in Arabidopsis. Plant Cell 19, 1912-1929 (2007).
    • (2007) Plant Cell , vol.19 , pp. 1912-1929
    • Zhang, Y.1
  • 33
    • 33644845345 scopus 로고    scopus 로고
    • Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis
    • Jammes, F. et al. Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis. Plant J. 44, 447-458 (2005).
    • (2005) Plant J , vol.44 , pp. 447-458
    • Jammes, F.1
  • 34
    • 2942739216 scopus 로고    scopus 로고
    • A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway
    • Hashimoto, M. et al. A novel rice PR10 protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway. Plant Cell Physiol. 45, 550-559 (2004).
    • (2004) Plant Cell Physiol , vol.45 , pp. 550-559
    • Hashimoto, M.1
  • 35
    • 0017503513 scopus 로고
    • Crop salt tolerance-current assessment
    • Maas, E. V. & Hoffman, G. J. Crop salt tolerance-current assessment. J. Irrig. Drain. E-ASCE 103, 115-134 (1977).
    • (1977) J. Irrig. Drain. E-ASCE , vol.103 , pp. 115-134
    • Maas, E.V.1    Hoffman, G.J.2
  • 36
    • 43149090878 scopus 로고    scopus 로고
    • Mechanisms of salinity tolerance
    • Munns, R. & Tester, M. Mechanisms of salinity tolerance. Annu. Rev. Plant Biol. 59, 651-681 (2008).
    • (2008) Annu. Rev. Plant Biol , vol.59 , pp. 651-681
    • Munns, R.1    Tester, M.2
  • 37
    • 84982226490 scopus 로고    scopus 로고
    • Root spatial metabolite profiling of two genotypes of barley (Hordeum vulgare L.) reveals differences in response to short-term salt stress
    • Shelden, M. C., Dias, D. A., Jayasinghe, N. S., Bacic, A. & Roessner, U. Root spatial metabolite profiling of two genotypes of barley (Hordeum vulgare L.) reveals differences in response to short-term salt stress. J. Exp. Bot. 37, 3731-3745 (2016).
    • (2016) J. Exp. Bot , vol.37 , pp. 3731-3745
    • Shelden, M.C.1    Dias, D.A.2    Jayasinghe, N.S.3    Bacic, A.4    Roessner, U.5
  • 38
    • 46349083060 scopus 로고    scopus 로고
    • Expression of Dehydrin 5 during the development of frost tolerance in barley (Hordeum vulgare)
    • Kosová, K. et al. Expression of Dehydrin 5 during the development of frost tolerance in barley (Hordeum vulgare). J. Plant Physiol. 165, 1142-1151 (2008).
    • (2008) J. Plant Physiol , vol.165 , pp. 1142-1151
    • Kosová, K.1
  • 39
    • 35248855455 scopus 로고    scopus 로고
    • Overexpression of wheat dehydrin DHN-5 enhances tolerance to salt and osmotic stress in Arabidopsis thaliana
    • Brini, F. et al. Overexpression of wheat dehydrin DHN-5 enhances tolerance to salt and osmotic stress in Arabidopsis thaliana. Plant Cell Rep. 26, 2017-2026 (2007).
    • (2007) Plant Cell Rep , vol.26 , pp. 2017-2026
    • Brini, F.1
  • 40
    • 77957955265 scopus 로고    scopus 로고
    • Control of somatic embryogenesis and embryo development by AP2 transcription factors
    • El Ouakfaoui, S. et al. Control of somatic embryogenesis and embryo development by AP2 transcription factors. Plant Mol. Biol. 74, 313-326 (2010).
    • (2010) Plant Mol. Biol , vol.74 , pp. 313-326
    • El Ouakfaoui, S.1
  • 41
    • 0025718126 scopus 로고
    • Lectins lectin genes, and their role in plant defense
    • Chrispeels, M. J. & Raikhel, N. V. Lectins, lectin genes, and their role in plant defense. Plant Cell 3, 1-9 (1991).
    • (1991) Plant Cell , vol.3 , pp. 1-9
    • Chrispeels, M.J.1    Raikhel, N.V.2
  • 42
    • 0034072442 scopus 로고    scopus 로고
    • Isolation and characterization of a jacalin-related mannose-binding lectin from salt-stressed rice (Oryza sativa) plants
    • Zhang, W. et al. Isolation and characterization of a jacalin-related mannose-binding lectin from salt-stressed rice (Oryza sativa) plants. Planta 210, 970-978 (2000).
    • (2000) Planta , vol.210 , pp. 970-978
    • Zhang, W.1
  • 43
    • 0023907044 scopus 로고
    • Molecular characterization of the patatin multigene family of potato
    • Mignery, G. A., Pikaard, C. S. & Park, W. D. Molecular characterization of the patatin multigene family of potato. Gene 62, 27-44 (1988).
    • (1988) Gene , vol.62 , pp. 27-44
    • Mignery, G.A.1    Pikaard, C.S.2    Park, W.D.3
  • 44
    • 84355166594 scopus 로고    scopus 로고
    • Genome-wide transcriptome dissection of the rice root system: Implications for developmental and physiological functions
    • Takehisa, H. et al. Genome-wide transcriptome dissection of the rice root system: implications for developmental and physiological functions. Plant J. 69, 126-140 (2012).
    • (2012) Plant J , vol.69 , pp. 126-140
    • Takehisa, H.1
  • 45
    • 0141573438 scopus 로고    scopus 로고
    • Expansion dynamics, metabolite composition and substance transfer of the primary root growth zone of Zea mays L. Grown in different external nutrient availabilities
    • Walter, A., Feil, R. & Schurr, U. Expansion dynamics, metabolite composition and substance transfer of the primary root growth zone of Zea mays L. grown in different external nutrient availabilities. Plant Cell Environ. 26, 1451-1466 (2003).
    • (2003) Plant Cell Environ , vol.26 , pp. 1451-1466
    • Walter, A.1    Feil, R.2    Schurr, U.3
  • 46
    • 84855794798 scopus 로고    scopus 로고
    • Spatially resolved analysis of small molecules by matrix-assisted laser desorption/ionization mass spectrometric imaging (MALDI-MSI)
    • Peukert, M. et al. Spatially resolved analysis of small molecules by matrix-assisted laser desorption/ionization mass spectrometric imaging (MALDI-MSI). New Phytol. 193, 806-815 (2012).
    • (2012) New Phytol , vol.193 , pp. 806-815
    • Peukert, M.1
  • 47
    • 84929455267 scopus 로고    scopus 로고
    • A high resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axis
    • Marcon, C. et al. A high resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axis. Plant Physiol. pp-00138 (2015).
    • (2015) Plant Physiol , pp. 00138
    • Marcon, C.1
  • 48
    • 1642566021 scopus 로고    scopus 로고
    • Mapping and QTL analysis of the barley population Clipper ×
    • Karakousis, A. et al. Mapping and QTL analysis of the barley population Clipper × Sahara. Aust. J. Agr. Res. 54, 1137-1140 (2003).
    • (2003) Sahara. Aust. J. Agr. Res , vol.54 , pp. 1137-1140
    • Karakousis, A.1
  • 50
    • 84925267288 scopus 로고    scopus 로고
    • UniRef clusters: A comprehensive and scalable alternative for improving sequence similarity searches
    • Suzek, B. E. et al. UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches. Bioinformatics 31, 926-932 (2015).
    • (2015) Bioinformatics , vol.31 , pp. 926-932
    • Suzek, B.E.1
  • 51
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. & Salzberg, S. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.2
  • 52
    • 79961123152 scopus 로고    scopus 로고
    • RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
    • Li, B. & Dewey, C. N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12, 323, doi:10.1186/1471-2105-12-323 (2011).
    • (2011) BMC Bioinformatics , vol.12 , pp. 323
    • Li, B.1    Dewey, C.N.2
  • 53
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M. D., McCarthy, D. J. & Smyth, G. K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 54
    • 84858041341 scopus 로고    scopus 로고
    • Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
    • McCarthy, D. J., Chen, Y. & Smyth, G. K. Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation. Nucleic Acids Res. 40, 4288-4297 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. 4288-4297
    • McCarthy, D.J.1    Chen, Y.2    Smyth, G.K.3
  • 55
    • 84966463309 scopus 로고    scopus 로고
    • R Development Core Team R:, R Foundation for Statistical Computing Vienna Austria. ISBN 3-900051-07-0, Accessed: 22 December 2015)
    • R Development Core Team R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0 (2008). Available at: http://www.R-project.org. (Accessed: 22 December 2015).
    • (2008) A Language and Environment for Statistical Computing
  • 57
    • 79960610118 scopus 로고    scopus 로고
    • REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
    • Supek, F., Bošnjak, M., Škunca, N. & Šmuc, T. REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms. PLoS One 6, e21800. doi:10.1371/journal.pone.0021800 (2011).
    • (2011) PLoS One , vol.6
    • Supek, F.1    Bošnjak, M.2    Škunca, N.3    Šmuc, T.4
  • 58
    • 2942527473 scopus 로고    scopus 로고
    • Gene prediction with a hidden Markov model and a new intron submodel
    • Stanke, M. & Waack, S. Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics 19 (Suppl 2), ii215-ii225, doi: 10.1093/bioinformatics/btg1080 (2003).
    • (2003) Bioinformatics , vol.19 , pp. ii215-ii225
    • Stanke, M.1    Waack, S.2
  • 59
    • 84890829647 scopus 로고    scopus 로고
    • The Amborella genome and the evolution of flowering plants
    • Amborella Genome Project
    • Amborella Genome Project. The Amborella genome and the evolution of flowering plants. Science 342, no. 6165, doi:10.1126/ science.1241089 (2013).
    • (2013) Science , vol.342 , Issue.6165
  • 60
    • 84862234802 scopus 로고    scopus 로고
    • The Arabidopsis Information Resource (TAIR): Improved gene annotation and new tools
    • Database issue
    • Lamesch, P. et al. The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Res. 40, Database issue D1202-102012 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. D1202-102012
    • Lamesch, P.1
  • 61
    • 76749150030 scopus 로고    scopus 로고
    • Genome sequencing and analysis of the model grass Brachypodium distachyon
    • International Brachypodium Initiative
    • International Brachypodium Initiative. Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463, 763-768 (2010).
    • (2010) Nature , vol.463 , pp. 763-768
  • 62
    • 84903203459 scopus 로고    scopus 로고
    • The genome of Eucalyptus grandis
    • Myburg, A. A. et al. The genome of Eucalyptus grandis. Nature 510, 356-362 (2014).
    • (2014) Nature , vol.510 , pp. 356-362
    • Myburg, A.A.1
  • 63
    • 84870265846 scopus 로고    scopus 로고
    • A physical, genetic and functional sequence assembly of the barley genome
    • International Barley Genome Sequencing Consortium
    • International Barley Genome Sequencing Consortium. A physical, genetic and functional sequence assembly of the barley genome. Nature, 491, 711-716 (2012).
    • (2012) Nature , vol.491 , pp. 711-716
  • 64
    • 84355166513 scopus 로고    scopus 로고
    • The Medicago genome provides insight into the evolution of rhizobial symbioses
    • Young, N. D. et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature 480, 520-524 (2011).
    • (2011) Nature , vol.480 , pp. 520-524
    • Young, N.D.1
  • 65
    • 33846101405 scopus 로고    scopus 로고
    • The TIGR Rice Genome Annotation Resource: Improvements and new features
    • Database issue
    • Ouyang, S. et al. The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res. 35, Database issue D883-D887 (2007).
    • (2007) Nucleic Acids Res , vol.35 , pp. D883-D887
    • Ouyang, S.1
  • 66
    • 33748760611 scopus 로고    scopus 로고
    • The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    • Tuskan, G. A. et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313, 1596-1604 (2006).
    • (2006) Science , vol.313 , pp. 1596-1604
    • Tuskan, G.A.1
  • 67
    • 58449137410 scopus 로고    scopus 로고
    • The Sorghum bicolor genome and the diversification of grasses
    • Paterson, A. H. et al. The Sorghum bicolor genome and the diversification of grasses. Nature 457, 551-556 (2009).
    • (2009) Nature , vol.457 , pp. 551-556
    • Paterson, A.H.1
  • 68
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity, and dynamics
    • Schnable, P. S. et al. The B73 maize genome: complexity, diversity, and dynamics. Science 326, 1112-1115 (2009).
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.