Salt-stress induced alterations in the root lipidome of two barley genotypes with contrasting responses to salinity

Functional Plant Biology

Volumn 43, Issue 2, 2016, Pages 207-219

  Natera, Siria H A ^a   Hill, Camilla B ^b,c   Rupasinghe, Thusitha W T ^a   Roessner, Ute ^a,b  

^a Metabolomics Australia Bio21 Institute for Molecular Science and Biotechnology   (Australia)

^b School of Dental Science   (Australia)

^c MURDOCH UNIVERSITY   (Australia)

Author keywords

Hordeum vulgare; lipid metabolism; lipidomics; mass spectrometry; salinity

Indexed keywords

ADAPTATION; BARLEY; BIOCHEMICAL COMPOSITION; CROP YIELD; ENVIRONMENTAL STRESS; FATTY ACID; GENOTYPE; LIPID; MASS SPECTROMETRY; METABOLISM; MOLECULAR ANALYSIS; ROOT SYSTEM; SALINITY TOLERANCE; YIELD RESPONSE;

HORDEUM; HORDEUM VULGARE; HORDEUM VULGARE SUBSP. VULGARE;

EID: 84955137554     PISSN: 14454408     EISSN: 14454416     Source Type: Journal    
DOI: 10.1071/FP15253     Document Type: Article

References (53)

1. Adem GD, Roy SJ, Zhou M, Bowman JP, Shabala S. (2014). Evaluating contribution of ionic, osmotic and oxidative stress components towards salinity tolerance in barley. BMC Plant Biology 14(1), 113. doi: 10.1186/.1471-2229-14-113
2. Blanksby SJ, Mitchell TW. (2010). Advances in mass spectrometry for lipidomics. Annual Review of Analytical Chemistry (Palo Alto, Calif) 3, 433-465. doi: 10.1146/annurev.anchem.111808.073705
3. Brown DJ, DuPont FM. (1989). Lipid composition of plasma membranes and endomembranes prepared from roots of barley (Hordeum vulgare L): effects of salt. Plant Physiology. 90, 955-961. doi: 10.1104/pp. 90.3.955
4. Carruthers A, Melchior DJ. (1986). How bilayer lipids affect membrane protein activity. Trends in Biochemical Sciences 11(8), 331-335. doi: 10.1016/0968-0004(86)90292-6
5. Chalbi N, Martínez-Ballesta MC, Youssef NB, Carvajal M. (2015). Intrinsic stability of Brassicaceae plasma membrane in relation to changes in proteins and lipids as a response to salinity. Journal of Plant Physiology. 175, 148-156. doi: 10.1016/j.jplph.2014.12.003
6. Cooke DT, Burden RS. (1990). Lipid modulation of plasma membranebound ATPases. Physiologia Plantarum 78(1), 153-159. doi: 10.1111/.j.1399-3054.1990.tb08730.x
7. Devaiah SP, Roth MR, Baughman E, Li M, Tamura P, Jeannotte R, Welti R, Wang X. (2006). Quantitative profiling of polar glycerolipid species from organs of wild-Type Arabidopsis and a PHOSPHOLIPASE Da1 knockout mutant. Phytochemistry 67(17), 1907-1924. doi: 10.1016/.j.phytochem.2006.06.005
8. DuPont FM, Tanaka CK, Hurkman WJ. (1988). Separation and immunological characterization of membrane fractions from barley roots. Plant Physiology. 86, 717-724. doi: 10.1104/pp.86.3.717
9. Fahy E, Cotter D, Byrnes R, Sud M, Maer A, Li J, Nadeau D, Zhau Y, Subramaniam S. (2007). Bioinformatics for lipidomics. In ?Methods in enzymology?. (Ed. HA Brown) pp. 247-273. (Academic Press: New York
10. Fahy E, Sud M, Cotter D, Subramaniam S. (2007). LIPID MAPS online tools for lipid research. Nucleic Acids Research. 35, W606-W612. doi: 10.1093/nar/gkm324
11. Fahy E, Subramaniam S, Murphy R, Nishijima M, Raetz C, Shimizu T, Spener F, van Meer G, Wakelam M, Dennis EA. (2009). Update of the LIPID MAPS comprehensive classification system for lipids. Journal of Lipid Research. 50, S9-S14. doi: 10.1194/jlr.R800095-JLR200
12. FAO. (2012). Food and Agriculture Organization of the United Nations (FAO) statistical databases. Available at http://faostat.fao.org [Verified 20 August 2015
13. Flowers TJ, Munns R, Colmer TD. (2015). Sodium chloride toxicity and the cellular basis of salt tolerance in halophytes. Annals of Botany 115(3), 419-431. doi: 10.1093/aob/mcu217
14. Genc Y, McDonald GK, Tester M. (2007). Reassessment of tissue Na+ concentration as a criterion for salinity tolerance in bread wheat. Plant, Cell & Environment. 30, 1486-1498. doi: 10.1111/j.1365-3040.2007. 01726.x
15. Greenway H, Munns R. (1980).Mechanismsof salt tolerance inNonhalophytes. Annual Review of Plant Physiology 31(1), 149-190. doi: 10.1146/annurev. pp.31.060180.001053
16. Hill CB, Bacic A, Roessner U. (2014). LC-MS profiling to link metabolic and phenotypic diversity in plant mapping populations. In ?Mass spectrometry in metabolomics?. pp. 29-41. (Springer: New York
17. Horn PJ, Chapman KD. (2011). Organellar lipidomics. Plant Signaling & Behavior 6(10), 1594-1596. doi: 10.4161/psb.6.10.17133
18. Horn PJ, Chapman KD. (2012). High-resolution measurements in plant biology: lipidomics in tissues, cells and subcellular compartments. The Plant Journal. 70, 69-80. doi: 10.1111/j.1365-313X.2011.04868.x
19. Hu CH, van Dommelen J, van der Heijden R, Spijksma G, Reijmers TH, Wang M, Slee E, Lu X, Xu G, van der Greef J, Hankemeier T. (2008). RPLC-Ion-Trap-FTMS method for lipid profiling of plasma: method validation and application to p53 mutant mouse model. Journal of Proteome Research. 7, 4982-4991. doi: 10.1021/pr800373m
20. Karakousis A, Barr AR, Kretschmer JM, Manning S, Jefferies SP, Chalmers KJ, Islam AKM, Langridge P. (2003). Mapping and QTL analysis of the barley population Clipper Sahara. Crop and Pasture Science 54(12), 1137-1140. doi: 10.1071/AR02180
21. Lee AG. (2004). How lipids affect the activities of integral membrane proteins. Biochimica et Biophysica Acta (BBA) -Biomembranes 1666(1-2), 62-87. doi: 10.1016/j.bbamem.2004.05.012
22. Lee YJ, Perdian DC, Song Z, Yeung ES, Nikolau BJ. (2012). Use of mass spectrometry for imaging metabolites in plants. The Plant Journal 70(1), 81-95. doi: 10.1111/j.1365-313X.2012.04899.x
23. Mansour MMF. (2013). Plasma membrane permeability as an indicator of salt tolerance in plants. Biologia Plantarum 57(1), 1-10. doi: 10.1007/.s10535-012-0144-9
24. Meijer HJ, Munnik T. (2003). Phospholipid-based signaling in plants. Annual Review of Plant Biology. 54, 265-306. doi: 10.1146/annurev. arplant.54.031902.134748
25. Mittler R. (2006). Abiotic stress, the field environment and stress combination. Trends in Plant Science 11(1), 15-19. doi: 10.1016/.j.tplants.2005.11.002
26. Munns R, Tester M. (2008). Mechanisms of salinity tolerance. Annual Review of Plant Biology. 59, 651-681. doi: 10.1146/annurev.arplant.59. 032607.092911
27. Narasimhan R, Wang G, Li M, Roth M, Welti R, Wang X. (2013). Differential changes in galactolipid and phospholipid species in soybean leaves and roots under nitrogen deficiency and after nodulation. Phytochemistry. 96, 81-91. doi: 10.1016/j.phytochem.2013. 09.026
28. Okazaki Y, Saito K. (2014). Roles of lipids as signaling molecules and mitigators during stress response in plants. The Plant Journal 79(4), 584-596. doi: 10.1111/tpj.12556
29. Okazaki Y, Kamide Y, Hirai MY, Saito K. (2013). Plant lipidomics based on hydrophilic interaction chromatography coupled to ion trap time-offlight mass spectrometry. Metabolomics 9(1), 121-131. doi: 10.1007/.s11306-011-0318-z
30. Olmstead ILD, Hill DRA, Dias DA, Jayasinghe NS, Callahan DL, Kentish SE, Scales PJ, Martin GJO. (2013). A quantitative analysis of microalgal lipids for optimization of biodiesel and omega-3 production. Biotechnology and Bioengineering 110(8), 2096-2104. doi: 10.1002/bit.24844
31. Pluskal T, Castillo S, Villar-Briones A, Orešic M. (2010). MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinformatics. 11, 395. doi: 10.1186/1471-2105-11-395
32. Ren M, Phoon CKL, Schlame M. (2014). Metabolism and function of mitochondrial cardiolipin. Progress in Lipid Research. 55, 1-16. doi: 10.1016/j.plipres.2014.04.001
33. Samarakoon T, Shiva S, Lowe K, Tamura P, Roth MR, Welti R. (2012). Arabidopsis thaliana membrane lipid molecular species and their mass spectral analysis. High-Throughput Phenotyping in Plants: Methods and Protocols. 918, 179-268.
34. Shelden MC, Roessner U, Sharp RE, Tester M, Bacic A. (2013). Genetic variation in the root growth response of barley genotypes to salinity stress. Functional Plant Biology 40(5), 516-530. doi: 10.1071/FP12290
35. Shi BJ, Sutton T, Collins NC, Pallotta M, Langridge P. (2010). Construction of a barley bacterial artificial chromosome library suitable for cloning genes for boron tolerance, sodium exclusion and high grain zinc content. Plant Breeding 129(3), 291-296. doi: 10.1111/j.1439-0523. 2009.01762.x
36. Shiva S, Vu HS, Roth MR, Zhou Z, Marepally SR, Nune DS, Lushington GH, Visvanathan M, Welti R. (2013). Lipidomic analysis of plant membrane lipids by direct infusion tandem mass spectrometry. Plant Lipid Signaling Protocols. 1009, 79-91.
37. Sommer B. (2013). Membrane packing problems: a short review on computational membrane modeling methods and tools. Computational and Structural Biotechnology Journal 5(6), 1-13. doi: 10.5936/csbj.20.1302014
38. Spychalla JP, Desborough SL. (1990). Fatty acids, membrane permeability, and sugars of stored potato tubers. Plant Physiology 94(3), 1207-1213. doi: 10.1104/pp.94.3.1207
39. Surjus A, Durand M. (1996). Lipid changes in soybean root membranes in response to salt treatment. Journal of Experimental Botany 47(1), 17-23. doi: 10.1093/jxb/47.1.17
40. Tavakkoli E, Rengasamy P, McDonald GK. (2010). High concentrations of Na+ and Cl-ions in soil solution have simultaneous detrimental effects on growth of faba bean under salinity stress. Journal of Experimental Botany 61(15), 4449-4459. doi: 10.1093/jxb/erq251
41. Upchurch RG. (2008). Fatty acid unsaturation, mobilization, and regulation in the response of plants to stress. Biotechnology Letters. 30, 967-977. doi: 10.1007/s10529-008-9639-z
42. van Meer G. (2005). Cellular lipidomics. EMBO Journal. 24, 3159-3165. doi: 10.1038/sj.emboj.7600798
43. van Meer G, Voelker DR, Feigenson GW. (2008). Membrane lipids: where they are and how they behave. Nature Reviews. Molecular Cell Biology 9(2), 112-124. doi: 10.1038/nrm2330
44. Walia H, Wilson C, Condamine P, Liu X, Ismail AM, Close TJ. (2007). Large-scale expression profiling and physiological characterization of jasmonic acid-mediated adaptation of barley to salinity stress. Plant, Cell & Environment 30(4), 410-421. doi: 10.1111/j.1365-3040.2006. 01628.x
45. Wang X. (2002). Phospholipase D in hormonal and stress signalling. Current Opinion in Plant Biology. 5, 408-414. doi: 10.1016/S1369-5266(02)00283-2
46. Weber H. (2002). Fatty acid-derived signals in plants. Trends in Plant Science 7(5), 217-224. doi: 10.1016/S1360-1385(02)02250-1
47. Welti R, Wang X. (2004). Lipid species profiling: a high-Throughput approach to identify lipid compositional changes and determine the function of genes involved in lipid metabolism and signaling. Current Opinion in Plant Biology 7(3), 337-344. doi: 10.1016/j.pbi.2004.03.011
48. Wenk MR. (2005). The emerging field of lipidomics. Nature Reviews. Drug Discovery 4(7), 594-610. doi: 10.1038/nrd1776
49. Widodo , Patterson JH, Newbigin E, Tester M, Bacic A, Roessner U. (2009). Metabolic responses to salt stress of barley (Hordeum vulgare L). cultivars, Sahara and Clipper, which differ in salinity tolerance. Journal of Experimental Botany 60(14), 4089-4103. doi: 10.1093/jxb/.erp243
50. Wu J, Seliskar DM, Gallagher JL. (2005). The response of plasma membrane lipid composition in callus of the halophyte Spartina patens (Poaceae). to salinity stress. American Journal of Botany 92(5), 852-858. doi: 10.3732/ajb.92.5.852
51. Xia J, Sinelnikov IV, Han B, Wishart DS. (2015). MetaboAnalyst 3.0 -making metabolomics more meaningful. Nucleic Acids Research 43(W1), W251-W257. doi: 10.1093/nar/gkv380
52. Yoon JY, Hamayun M, Lee SK, Lee IJ. (2009). Methyl jasmonate alleviated salinity stress in soybean. Journal of Crop Science and Biotechnology 12(2), 63-68. doi: 10.1007/s12892-009-0060-5
53. Zhou X-R, Callahan DL, Shrestha P, Liu Q, Petrie JR, Singh SP. (2014). Lipidomic analysis of Arabidopsis seed genetically engineered to contain DHA. Frontiers in Plant Science. 5, 419. doi: 10.3389/fpls. 2014.00419