-
1
-
-
80051989609
-
Understanding the transcriptome through RNA structure
-
Wan Y, Kertesz M, Spitale RC, Segal E and Chang HY (2011) Understanding the transcriptome through RNA structure. Nat Rev Genet 12, 641–655.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 641-655
-
-
Wan, Y.1
Kertesz, M.2
Spitale, R.C.3
Segal, E.4
Chang, H.Y.5
-
2
-
-
84902830900
-
Insights into RNA structure and function from genome-wide studies
-
Mortimer SA, Kidwell MA and Doudna JA (2014) Insights into RNA structure and function from genome-wide studies. Nat Rev Genet 15, 469–479.
-
(2014)
Nat Rev Genet
, vol.15
, pp. 469-479
-
-
Mortimer, S.A.1
Kidwell, M.A.2
Doudna, J.A.3
-
3
-
-
78751662374
-
RNA folding in living cells
-
Zemora G and Waldsich C (2010) RNA folding in living cells. RNA Biol 7, 634–641.
-
(2010)
RNA Biol
, vol.7
, pp. 634-641
-
-
Zemora, G.1
Waldsich, C.2
-
4
-
-
84870152928
-
Biosynthesis and function of posttranscriptional modifications of transfer RNAs
-
El Yacoubi B, Bailly M and de Crecy-Lagard V (2012) Biosynthesis and function of posttranscriptional modifications of transfer RNAs. Annu Rev Genet 46, 69–95.
-
(2012)
Annu Rev Genet
, vol.46
, pp. 69-95
-
-
El Yacoubi, B.1
Bailly, M.2
de Crecy-Lagard, V.3
-
5
-
-
33847784925
-
Eukaryotic RNase P RNA mediates cleavage in the absence of protein
-
Kikovska E, Svard SG and Kirsebom LA (2007) Eukaryotic RNase P RNA mediates cleavage in the absence of protein. Proc Natl Acad Sci USA 104, 2062–2067.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 2062-2067
-
-
Kikovska, E.1
Svard, S.G.2
Kirsebom, L.A.3
-
6
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
Guerrier-Takada C, Gardiner K, Marsh T, Pace N and Altman S (1983) The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35, 849–857.
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
7
-
-
0043239333
-
Endonucleolytic processing of CCA-less tRNA precursors by RNase Z in Bacillus subtilis
-
Pellegrini O, Nezzar J, Marchfelder A, Putzer H and Condon C (2003) Endonucleolytic processing of CCA-less tRNA precursors by RNase Z in Bacillus subtilis. EMBO J 22, 4534–4543.
-
(2003)
EMBO J
, vol.22
, pp. 4534-4543
-
-
Pellegrini, O.1
Nezzar, J.2
Marchfelder, A.3
Putzer, H.4
Condon, C.5
-
8
-
-
1242309516
-
Drosophila RNase Z processes mitochondrial and nuclear pre-tRNA 3′ ends in vivo
-
Dubrovsky EB, Dubrovskaya VA, Levinger L, Schiffer S and Marchfelder A (2004) Drosophila RNase Z processes mitochondrial and nuclear pre-tRNA 3′ ends in vivo. Nucleic Acids Res 32, 255–262.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 255-262
-
-
Dubrovsky, E.B.1
Dubrovskaya, V.A.2
Levinger, L.3
Schiffer, S.4
Marchfelder, A.5
-
9
-
-
84890588127
-
tRNA 3′ processing in yeast involves tRNase Z, Rex1, and Rrp6
-
Skowronek E, Grzechnik P, Spath B, Marchfelder A and Kufel J (2014) tRNA 3′ processing in yeast involves tRNase Z, Rex1, and Rrp6. RNA 20, 115–130.
-
(2014)
RNA
, vol.20
, pp. 115-130
-
-
Skowronek, E.1
Grzechnik, P.2
Spath, B.3
Marchfelder, A.4
Kufel, J.5
-
11
-
-
79955716664
-
Localization of human RNase Z isoforms: dual nuclear/mitochondrial targeting of the ELAC2 gene product by alternative translation initiation
-
Rossmanith W (2011) Localization of human RNase Z isoforms: dual nuclear/mitochondrial targeting of the ELAC2 gene product by alternative translation initiation. PLoS One 6, e19152.
-
(2011)
PLoS One
, vol.6
-
-
Rossmanith, W.1
-
12
-
-
84976870479
-
GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes
-
Chan PP and Lowe TM (2016) GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes. Nucleic Acids Res 44, D184–D189.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D184-D189
-
-
Chan, P.P.1
Lowe, T.M.2
-
13
-
-
0025155503
-
Yeast tRNA-splicing endonuclease is a heterotrimeric enzyme
-
Rauhut R, Green PR and Abelson J (1990) Yeast tRNA-splicing endonuclease is a heterotrimeric enzyme. J Biol Chem 265, 18180–18184.
-
(1990)
J Biol Chem
, vol.265
, pp. 18180-18184
-
-
Rauhut, R.1
Green, P.R.2
Abelson, J.3
-
14
-
-
0030730820
-
The yeast tRNA splicing endonuclease: a tetrameric enzyme with two active site subunits homologous to the archaeal tRNA endonucleases
-
Trotta CR, Miao F, Arn EA, Stevens SW, Ho CK, Rauhut R and Abelson JN (1997) The yeast tRNA splicing endonuclease: a tetrameric enzyme with two active site subunits homologous to the archaeal tRNA endonucleases. Cell 89, 849–858.
-
(1997)
Cell
, vol.89
, pp. 849-858
-
-
Trotta, C.R.1
Miao, F.2
Arn, E.A.3
Stevens, S.W.4
Ho, C.K.5
Rauhut, R.6
Abelson, J.N.7
-
15
-
-
2042479408
-
Identification of a human endonuclease complex reveals a link between tRNA splicing and pre-mRNA 3′ end formation
-
Paushkin SV, Patel M, Furia BS, Peltz SW and Trotta CR (2004) Identification of a human endonuclease complex reveals a link between tRNA splicing and pre-mRNA 3′ end formation. Cell 117, 311–321.
-
(2004)
Cell
, vol.117
, pp. 311-321
-
-
Paushkin, S.V.1
Patel, M.2
Furia, B.S.3
Peltz, S.W.4
Trotta, C.R.5
-
16
-
-
0020710638
-
Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease
-
Peebles CL, Gegenheimer P and Abelson J (1983) Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease. Cell 32, 525–536.
-
(1983)
Cell
, vol.32
, pp. 525-536
-
-
Peebles, C.L.1
Gegenheimer, P.2
Abelson, J.3
-
17
-
-
0025271545
-
Accumulation of pre-tRNA splicing ‘2/3’ intermediates in a Saccharomyces cerevisiae mutant
-
Ho CK, Rauhut R, Vijayraghavan U and Abelson J (1990) Accumulation of pre-tRNA splicing ‘2/3’ intermediates in a Saccharomyces cerevisiae mutant. EMBO J 9, 1245–1252.
-
(1990)
EMBO J
, vol.9
, pp. 1245-1252
-
-
Ho, C.K.1
Rauhut, R.2
Vijayraghavan, U.3
Abelson, J.4
-
18
-
-
33745001194
-
Cleavage of pre-tRNAs by the splicing endonuclease requires a composite active site
-
Trotta CR, Paushkin SV, Patel M, Li H and Peltz SW (2006) Cleavage of pre-tRNAs by the splicing endonuclease requires a composite active site. Nature 441, 375–377.
-
(2006)
Nature
, vol.441
, pp. 375-377
-
-
Trotta, C.R.1
Paushkin, S.V.2
Patel, M.3
Li, H.4
Peltz, S.W.5
-
19
-
-
84903779727
-
Analysis of orthologous groups reveals archease and DDX1 as tRNA splicing factors
-
Popow J, Jurkin J, Schleiffer A and Martinez J (2014) Analysis of orthologous groups reveals archease and DDX1 as tRNA splicing factors. Nature 511, 104–107.
-
(2014)
Nature
, vol.511
, pp. 104-107
-
-
Popow, J.1
Jurkin, J.2
Schleiffer, A.3
Martinez, J.4
-
20
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel DP (2009) MicroRNAs: target recognition and regulatory functions. Cell 136, 215–233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
22
-
-
60149088848
-
Origins and Mechanisms of miRNAs and siRNAs
-
Carthew RW and Sontheimer EJ (2009) Origins and Mechanisms of miRNAs and siRNAs. Cell 136, 642–655.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
23
-
-
84899814038
-
Assembly and function of small RNA – Argonaute protein complexes
-
Dueck A and Meister G (2014) Assembly and function of small RNA – Argonaute protein complexes. Biol Chem 395, 611–629.
-
(2014)
Biol Chem
, vol.395
, pp. 611-629
-
-
Dueck, A.1
Meister, G.2
-
24
-
-
84879414849
-
Argonaute proteins: functional insights and emerging roles
-
Meister G (2013) Argonaute proteins: functional insights and emerging roles. Nat Rev Genet 14, 447–459.
-
(2013)
Nat Rev Genet
, vol.14
, pp. 447-459
-
-
Meister, G.1
-
25
-
-
84931572130
-
Towards a molecular understanding of microRNA-mediated gene silencing
-
Jonas S and Izaurralde E (2015) Towards a molecular understanding of microRNA-mediated gene silencing. Nat Rev Genet 16, 421–433.
-
(2015)
Nat Rev Genet
, vol.16
, pp. 421-433
-
-
Jonas, S.1
Izaurralde, E.2
-
26
-
-
84921448966
-
Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets
-
Kumar P, Anaya J, Mudunuri SB and Dutta A (2014) Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets. BMC Biol 12, 78.
-
(2014)
BMC Biol
, vol.12
, pp. 78
-
-
Kumar, P.1
Anaya, J.2
Mudunuri, S.B.3
Dutta, A.4
-
27
-
-
71549169628
-
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
-
Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JW, Green PJ, Barton GJ and Hutvagner G (2009) Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA 15, 2147–2160.
-
(2009)
RNA
, vol.15
, pp. 2147-2160
-
-
Cole, C.1
Sobala, A.2
Lu, C.3
Thatcher, S.R.4
Bowman, A.5
Brown, J.W.6
Green, P.J.7
Barton, G.J.8
Hutvagner, G.9
-
28
-
-
84864913576
-
Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs
-
Li Z, Ender C, Meister G, Moore PS, Chang Y and John B (2012) Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs. Nucleic Acids Res 40, 6787–6799.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 6787-6799
-
-
Li, Z.1
Ender, C.2
Meister, G.3
Moore, P.S.4
Chang, Y.5
John, B.6
-
29
-
-
84941358900
-
Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies
-
Telonis AG, Loher P, Honda S, Jing Y, Palazzo J, Kirino Y and Rigoutsos I (2015) Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies. Oncotarget 6, 24797–24822.
-
(2015)
Oncotarget
, vol.6
, pp. 24797-24822
-
-
Telonis, A.G.1
Loher, P.2
Honda, S.3
Jing, Y.4
Palazzo, J.5
Kirino, Y.6
Rigoutsos, I.7
-
30
-
-
80051713296
-
Angiogenin-induced tRNA fragments inhibit translation initiation
-
Ivanov P, Emara MM, Villen J, Gygi SP and Anderson P (2011) Angiogenin-induced tRNA fragments inhibit translation initiation. Mol Cell 43, 613–623.
-
(2011)
Mol Cell
, vol.43
, pp. 613-623
-
-
Ivanov, P.1
Emara, M.M.2
Villen, J.3
Gygi, S.P.4
Anderson, P.5
-
31
-
-
84928975328
-
Endogenous tRNA-derived fragments suppress breast cancer progression via YBX1 displacement
-
Goodarzi H, Liu X, Nguyen HC, Zhang S, Fish L and Tavazoie SF (2015) Endogenous tRNA-derived fragments suppress breast cancer progression via YBX1 displacement. Cell 161, 790–802.
-
(2015)
Cell
, vol.161
, pp. 790-802
-
-
Goodarzi, H.1
Liu, X.2
Nguyen, H.C.3
Zhang, S.4
Fish, L.5
Tavazoie, S.F.6
-
32
-
-
84961289482
-
Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals
-
Sharma U, Conine CC, Shea JM, Boskovic A, Derr AG, Bing XY, Belleannee C, Kucukural A, Serra RW, Sun F et al. (2015) Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals. Science 351, 391–396.
-
(2015)
Science
, vol.351
, pp. 391-396
-
-
Sharma, U.1
Conine, C.C.2
Shea, J.M.3
Boskovic, A.4
Derr, A.G.5
Bing, X.Y.6
Belleannee, C.7
Kucukural, A.8
Serra, R.W.9
Sun, F.10
-
33
-
-
84893147804
-
Slicing tRNAs to boost functional ncRNA diversity
-
Gebetsberger J and Polacek N (2013) Slicing tRNAs to boost functional ncRNA diversity. RNA Biol 10, 1798–1806.
-
(2013)
RNA Biol
, vol.10
, pp. 1798-1806
-
-
Gebetsberger, J.1
Polacek, N.2
-
34
-
-
84949758302
-
tRNA-derived fragments (tRFs): emerging new roles for an ancient RNA in the regulation of gene expression
-
Keam SP and Hutvagner G (2015) tRNA-derived fragments (tRFs): emerging new roles for an ancient RNA in the regulation of gene expression. Life (Basel) 5, 1638–1651.
-
(2015)
Life (Basel)
, vol.5
, pp. 1638-1651
-
-
Keam, S.P.1
Hutvagner, G.2
-
35
-
-
72749089855
-
A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)
-
Lee YS, Shibata Y, Malhotra A and Dutta A (2009) A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev 23, 2639–2649.
-
(2009)
Genes Dev
, vol.23
, pp. 2639-2649
-
-
Lee, Y.S.1
Shibata, Y.2
Malhotra, A.3
Dutta, A.4
-
36
-
-
77950202393
-
Human tRNA-derived small RNAs in the global regulation of RNA silencing
-
Haussecker D, Huang Y, Lau A, Parameswaran P, Fire AZ and Kay MA (2010) Human tRNA-derived small RNAs in the global regulation of RNA silencing. RNA 16, 673–695.
-
(2010)
RNA
, vol.16
, pp. 673-695
-
-
Haussecker, D.1
Huang, Y.2
Lau, A.3
Parameswaran, P.4
Fire, A.Z.5
Kay, M.A.6
-
37
-
-
77956278708
-
Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3′ trailers
-
Liao JY, Ma LM, Guo YH, Zhang YC, Zhou H, Shao P, Chen YQ and Qu LH (2010) Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3′ trailers. PLoS One 5, e10563.
-
(2010)
PLoS One
, vol.5
-
-
Liao, J.Y.1
Ma, L.M.2
Guo, Y.H.3
Zhang, Y.C.4
Zhou, H.5
Shao, P.6
Chen, Y.Q.7
Qu, L.H.8
-
38
-
-
84875623194
-
CLP1 links tRNA metabolism to progressive motor-neuron loss
-
Hanada T, Weitzer S, Mair B, Bernreuther C, Wainger BJ, Ichida J, Hanada R, Orthofer M, Cronin SJ, Komnenovic V et al. (2013) CLP1 links tRNA metabolism to progressive motor-neuron loss. Nature 495, 474–480.
-
(2013)
Nature
, vol.495
, pp. 474-480
-
-
Hanada, T.1
Weitzer, S.2
Mair, B.3
Bernreuther, C.4
Wainger, B.J.5
Ichida, J.6
Hanada, R.7
Orthofer, M.8
Cronin, S.J.9
Komnenovic, V.10
-
39
-
-
84899576549
-
Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function
-
Karaca E, Weitzer S, Pehlivan D, Shiraishi H, Gogakos T, Hanada T, Jhangiani SN, Wiszniewski W, Withers M, Campbell IM et al. (2014) Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function. Cell 157, 636–650.
-
(2014)
Cell
, vol.157
, pp. 636-650
-
-
Karaca, E.1
Weitzer, S.2
Pehlivan, D.3
Shiraishi, H.4
Gogakos, T.5
Hanada, T.6
Jhangiani, S.N.7
Wiszniewski, W.8
Withers, M.9
Campbell, I.M.10
-
40
-
-
34248563036
-
The human RNA kinase hClp1 is active on 3′ transfer RNA exons and short interfering RNAs
-
Weitzer S and Martinez J (2007) The human RNA kinase hClp1 is active on 3′ transfer RNA exons and short interfering RNAs. Nature 447, 222–226.
-
(2007)
Nature
, vol.447
, pp. 222-226
-
-
Weitzer, S.1
Martinez, J.2
-
41
-
-
84899581919
-
CLP1 founder mutation links tRNA splicing and maturation to cerebellar development and neurodegeneration
-
Schaffer AE, Eggens VR, Caglayan AO, Reuter MS, Scott E, Coufal NG, Silhavy JL, Xue Y, Kayserili H, Yasuno K et al. (2014) CLP1 founder mutation links tRNA splicing and maturation to cerebellar development and neurodegeneration. Cell 157, 651–663.
-
(2014)
Cell
, vol.157
, pp. 651-663
-
-
Schaffer, A.E.1
Eggens, V.R.2
Caglayan, A.O.3
Reuter, M.S.4
Scott, E.5
Coufal, N.G.6
Silhavy, J.L.7
Xue, Y.8
Kayserili, H.9
Yasuno, K.10
-
42
-
-
84937459158
-
Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers
-
Honda S, Loher P, Shigematsu M, Palazzo JP, Suzuki R, Imoto I, Rigoutsos I and Kirino Y (2015) Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers. Proc Natl Acad Sci USA 112, E3816–E3825.
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, pp. E3816-E3825
-
-
Honda, S.1
Loher, P.2
Shigematsu, M.3
Palazzo, J.P.4
Suzuki, R.5
Imoto, I.6
Rigoutsos, I.7
Kirino, Y.8
-
43
-
-
29944432120
-
Starvation-induced cleavage of the tRNA anticodon loop in Tetrahymena thermophila
-
Lee SR and Collins K (2005) Starvation-induced cleavage of the tRNA anticodon loop in Tetrahymena thermophila. J Biol Chem 280, 42744–42749.
-
(2005)
J Biol Chem
, vol.280
, pp. 42744-42749
-
-
Lee, S.R.1
Collins, K.2
-
44
-
-
43349083066
-
Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis
-
Jochl C, Rederstorff M, Hertel J, Stadler PF, Hofacker IL, Schrettl M, Haas H and Huttenhofer A (2008) Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis. Nucleic Acids Res 36, 2677–2689.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2677-2689
-
-
Jochl, C.1
Rederstorff, M.2
Hertel, J.3
Stadler, P.F.4
Hofacker, I.L.5
Schrettl, M.6
Haas, H.7
Huttenhofer, A.8
-
45
-
-
52949145277
-
tRNA cleavage is a conserved response to oxidative stress in eukaryotes
-
Thompson DM, Lu C, Green PJ and Parker R (2008) tRNA cleavage is a conserved response to oxidative stress in eukaryotes. RNA 14, 2095–2103.
-
(2008)
RNA
, vol.14
, pp. 2095-2103
-
-
Thompson, D.M.1
Lu, C.2
Green, P.J.3
Parker, R.4
-
46
-
-
0026794004
-
Angiogenin is a cytotoxic, tRNA-specific ribonuclease in the RNase A superfamily
-
Saxena SK, Rybak SM, Davey RT Jr, Youle RJ and Ackerman EJ (1992) Angiogenin is a cytotoxic, tRNA-specific ribonuclease in the RNase A superfamily. J Biol Chem 267, 21982–21986.
-
(1992)
J Biol Chem
, vol.267
, pp. 21982-21986
-
-
Saxena, S.K.1
Rybak, S.M.2
Davey, R.T.3
Youle, R.J.4
Ackerman, E.J.5
-
47
-
-
58149498297
-
Stress induces tRNA cleavage by angiogenin in mammalian cells
-
Fu H, Feng J, Liu Q, Sun F, Tie Y, Zhu J, Xing R, Sun Z and Zheng X (2009) Stress induces tRNA cleavage by angiogenin in mammalian cells. FEBS Lett 583, 437–442.
-
(2009)
FEBS Lett
, vol.583
, pp. 437-442
-
-
Fu, H.1
Feng, J.2
Liu, Q.3
Sun, F.4
Tie, Y.5
Zhu, J.6
Xing, R.7
Sun, Z.8
Zheng, X.9
-
48
-
-
65249129859
-
Angiogenin cleaves tRNA and promotes stress-induced translational repression
-
Yamasaki S, Ivanov P, Hu GF and Anderson P (2009) Angiogenin cleaves tRNA and promotes stress-induced translational repression. J Cell Biol 185, 35–42.
-
(2009)
J Cell Biol
, vol.185
, pp. 35-42
-
-
Yamasaki, S.1
Ivanov, P.2
Hu, G.F.3
Anderson, P.4
-
49
-
-
0022399773
-
Isolation and characterization of angiogenin, an angiogenic protein from human carcinoma cells
-
Fett JW, Strydom DJ, Lobb RR, Alderman EM, Bethune JL, Riordan JF and Vallee BL (1985) Isolation and characterization of angiogenin, an angiogenic protein from human carcinoma cells. Biochemistry 24, 5480–5486.
-
(1985)
Biochemistry
, vol.24
, pp. 5480-5486
-
-
Fett, J.W.1
Strydom, D.J.2
Lobb, R.R.3
Alderman, E.M.4
Bethune, J.L.5
Riordan, J.F.6
Vallee, B.L.7
-
50
-
-
84966470617
-
Three decades of research on angiogenin: a review and perspective
-
Sheng J and Xu Z (2016) Three decades of research on angiogenin: a review and perspective. Acta Biochim Biophys Sin (Shanghai) 48, 399–410.
-
(2016)
Acta Biochim Biophys Sin (Shanghai)
, vol.48
, pp. 399-410
-
-
Sheng, J.1
Xu, Z.2
-
51
-
-
84927599242
-
Diverse cell stresses induce unique patterns of tRNA up- and down-regulation: tRNA-seq for quantifying changes in tRNA copy number
-
Pang YL, Abo R, Levine SS and Dedon PC (2014) Diverse cell stresses induce unique patterns of tRNA up- and down-regulation: tRNA-seq for quantifying changes in tRNA copy number. Nucleic Acids Res 42, e170.
-
(2014)
Nucleic Acids Res
, vol.42
-
-
Pang, Y.L.1
Abo, R.2
Levine, S.S.3
Dedon, P.C.4
-
52
-
-
77951213498
-
Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly
-
Emara MM, Ivanov P, Hickman T, Dawra N, Tisdale S, Kedersha N, Hu GF and Anderson P (2010) Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly. J Biol Chem 285, 10959–10968.
-
(2010)
J Biol Chem
, vol.285
, pp. 10959-10968
-
-
Emara, M.M.1
Ivanov, P.2
Hickman, T.3
Dawra, N.4
Tisdale, S.5
Kedersha, N.6
Hu, G.F.7
Anderson, P.8
-
53
-
-
77955884641
-
RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
-
Schaefer M, Pollex T, Hanna K, Tuorto F, Meusburger M, Helm M and Lyko F (2010) RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. Genes Dev 24, 1590–1595.
-
(2010)
Genes Dev
, vol.24
, pp. 1590-1595
-
-
Schaefer, M.1
Pollex, T.2
Hanna, K.3
Tuorto, F.4
Meusburger, M.5
Helm, M.6
Lyko, F.7
-
54
-
-
84908153517
-
Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders
-
Blanco S, Dietmann S, Flores JV, Hussain S, Kutter C, Humphreys P, Lukk M, Lombard P, Treps L, Popis M et al. (2014) Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders. EMBO J 33, 2020–2039.
-
(2014)
EMBO J
, vol.33
, pp. 2020-2039
-
-
Blanco, S.1
Dietmann, S.2
Flores, J.V.3
Hussain, S.4
Kutter, C.5
Humphreys, P.6
Lukk, M.7
Lombard, P.8
Treps, L.9
Popis, M.10
-
55
-
-
84872870536
-
tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma
-
Maute RL, Schneider C, Sumazin P, Holmes A, Califano A, Basso K and Dalla-Favera R (2013) tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma. Proc Natl Acad Sci USA 110, 1404–1409.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 1404-1409
-
-
Maute, R.L.1
Schneider, C.2
Sumazin, P.3
Holmes, A.4
Califano, A.5
Basso, K.6
Dalla-Favera, R.7
-
56
-
-
0036845374
-
Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP
-
Zhang H, Kolb FA, Brondani V, Billy E and Filipowicz W (2002) Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP. EMBO J 21, 5875–5885.
-
(2002)
EMBO J
, vol.21
, pp. 5875-5885
-
-
Zhang, H.1
Kolb, F.A.2
Brondani, V.3
Billy, E.4
Filipowicz, W.5
-
57
-
-
54349104464
-
Mouse ES cells express endogenous shRNAs, siRNAs, and other microprocessor-independent, Dicer-dependent small RNAs
-
Babiarz JE, Ruby JG, Wang Y, Bartel DP and Blelloch R (2008) Mouse ES cells express endogenous shRNAs, siRNAs, and other microprocessor-independent, Dicer-dependent small RNAs. Genes Dev 22, 2773–2785.
-
(2008)
Genes Dev
, vol.22
, pp. 2773-2785
-
-
Babiarz, J.E.1
Ruby, J.G.2
Wang, Y.3
Bartel, D.P.4
Blelloch, R.5
-
58
-
-
85011936073
-
Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin
-
Burroughs AM, Ando Y, de Hoon MJ, Tomaru Y, Suzuki H, Hayashizaki Y and Daub CO (2011) Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin. RNA Biol 8, 158–177.
-
(2011)
RNA Biol
, vol.8
, pp. 158-177
-
-
Burroughs, A.M.1
Ando, Y.2
de Hoon, M.J.3
Tomaru, Y.4
Suzuki, H.5
Hayashizaki, Y.6
Daub, C.O.7
-
59
-
-
21844449964
-
Human mitochondrial tRNAMet is exported to the cytoplasm and associates with the Argonaute 2 protein
-
Maniataki E and Mourelatos Z (2005) Human mitochondrial tRNAMet is exported to the cytoplasm and associates with the Argonaute 2 protein. RNA 11, 849–852.
-
(2005)
RNA
, vol.11
, pp. 849-852
-
-
Maniataki, E.1
Mourelatos, Z.2
-
60
-
-
84930827484
-
Argonaute 2 binds directly to tRNA genes and promotes gene repression in cis
-
Woolnough JL, Atwood BL and Giles KE (2015) Argonaute 2 binds directly to tRNA genes and promotes gene repression in cis. Mol Cell Biol 35, 2278–2294.
-
(2015)
Mol Cell Biol
, vol.35
, pp. 2278-2294
-
-
Woolnough, J.L.1
Atwood, B.L.2
Giles, K.E.3
-
61
-
-
29444460385
-
Human La is found at RNA polymerase III-transcribed genes in vivo
-
Fairley JA, Kantidakis T, Kenneth NS, Intine RV, Maraia RJ and White RJ (2005) Human La is found at RNA polymerase III-transcribed genes in vivo. Proc Natl Acad Sci USA 102, 18350–18355.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 18350-18355
-
-
Fairley, J.A.1
Kantidakis, T.2
Kenneth, N.S.3
Intine, R.V.4
Maraia, R.J.5
White, R.J.6
-
62
-
-
22244466113
-
RNA chaperone activity of protein components of human Ro RNPs
-
Belisova A, Semrad K, Mayer O, Kocian G, Waigmann E, Schroeder R and Steiner G (2005) RNA chaperone activity of protein components of human Ro RNPs. RNA 11, 1084–1094.
-
(2005)
RNA
, vol.11
, pp. 1084-1094
-
-
Belisova, A.1
Semrad, K.2
Mayer, O.3
Kocian, G.4
Waigmann, E.5
Schroeder, R.6
Steiner, G.7
-
63
-
-
84857314596
-
RNA chaperone activity of human La protein is mediated by variant RNA recognition motif
-
Naeeni AR, Conte MR and Bayfield MA (2012) RNA chaperone activity of human La protein is mediated by variant RNA recognition motif. J Biol Chem 287, 5472–5482.
-
(2012)
J Biol Chem
, vol.287
, pp. 5472-5482
-
-
Naeeni, A.R.1
Conte, M.R.2
Bayfield, M.A.3
-
64
-
-
0031813786
-
5′ processing of tRNA precursors can Be modulated by the human La antigen phosphoprotein
-
Fan H, Goodier JL, Chamberlain JR, Engelke DR and Maraia RJ (1998) 5′ processing of tRNA precursors can Be modulated by the human La antigen phosphoprotein. Mol Cell Biol 18, 3201–3211.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 3201-3211
-
-
Fan, H.1
Goodier, J.L.2
Chamberlain, J.R.3
Engelke, D.R.4
Maraia, R.J.5
-
65
-
-
0345276475
-
Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs
-
Intine RV, Tenenbaum SA, Sakulich AL, Keene JD and Maraia RJ (2003) Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs. Mol Cell 12, 1301–1307.
-
(2003)
Mol Cell
, vol.12
, pp. 1301-1307
-
-
Intine, R.V.1
Tenenbaum, S.A.2
Sakulich, A.L.3
Keene, J.D.4
Maraia, R.J.5
-
66
-
-
84969895693
-
The La protein counteracts cisplatin-induced cell death by stimulating protein synthesis of anti-apoptotic factor Bcl2
-
Heise T, Kota V, Brock A, Morris AB, Rodriguez RM, Zierk AW, Howe PH and Sommer G (2016) The La protein counteracts cisplatin-induced cell death by stimulating protein synthesis of anti-apoptotic factor Bcl2. Oncotarget 7, 29664–29676.
-
(2016)
Oncotarget
, vol.7
, pp. 29664-29676
-
-
Heise, T.1
Kota, V.2
Brock, A.3
Morris, A.B.4
Rodriguez, R.M.5
Zierk, A.W.6
Howe, P.H.7
Sommer, G.8
-
67
-
-
84959446749
-
The La-related proteins, a family with connections to cancer
-
Stavraka C and Blagden S (2015) The La-related proteins, a family with connections to cancer. Biomolecules 5, 2701–2722.
-
(2015)
Biomolecules
, vol.5
, pp. 2701-2722
-
-
Stavraka, C.1
Blagden, S.2
-
68
-
-
84931041324
-
LARP4B is an AU-rich sequence associated factor that promotes mRNA accumulation and translation
-
Kuspert M, Murakawa Y, Schaffler K, Vanselow JT, Wolf E, Juranek S, Schlosser A, Landthaler M and Fischer U (2015) LARP4B is an AU-rich sequence associated factor that promotes mRNA accumulation and translation. RNA 21, 1294–1305.
-
(2015)
RNA
, vol.21
, pp. 1294-1305
-
-
Kuspert, M.1
Murakawa, Y.2
Schaffler, K.3
Vanselow, J.T.4
Wolf, E.5
Juranek, S.6
Schlosser, A.7
Landthaler, M.8
Fischer, U.9
-
69
-
-
84992389410
-
The Lupus autoantigen La prevents mis-channeling of tRNA fragments into the human MicroRNA pathway
-
Hasler D, Lehmann G, Murakawa Y, Klironomos F, Jakob L, Graesser FA, Rajewsky N, Landthaler M and Meister G (2016) The Lupus autoantigen La prevents mis-channeling of tRNA fragments into the human MicroRNA pathway. Mol Cell 63, 110–124.
-
(2016)
Mol Cell
, vol.63
, pp. 110-124
-
-
Hasler, D.1
Lehmann, G.2
Murakawa, Y.3
Klironomos, F.4
Jakob, L.5
Graesser, F.A.6
Rajewsky, N.7
Landthaler, M.8
Meister, G.9
|