메뉴 건너뛰기




Volumn 11, Issue 7, 2016, Pages

Bioinformatics prediction of polyketide synthase gene clusters from Mycosphaerella fijiensis

Author keywords

[No Author keywords available]

Indexed keywords

ALTERNAPYRONE; CARRIER PROTEIN; FUMONISIN; MELANIN; METHYLTRANSFERASE; NONRIBOSOMAL PEPTIDE SYNTHETASE; OXIDOREDUCTASE; POLYKETIDE; POLYKETIDE SYNTHASE; SOLANAPYRONE; UNCLASSIFIED DRUG; FUNGAL PROTEIN; PEPTIDE SYNTHASE;

EID: 84978910847     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0158471     Document Type: Article
Times cited : (21)

References (81)
  • 1
    • 79953274205 scopus 로고    scopus 로고
    • Mycosphaerella fijiensis, the black leaf streak pathogen of banana: Progress towards understanding pathogen biology and detection, disease development, and the challenges of control
    • PMID: 21453427
    • Churchill ACL (2011) Mycosphaerella fijiensis, the black leaf streak pathogen of banana: progress towards understanding pathogen biology and detection, disease development, and the challenges of control. Molecular Plant Pathology 12: 307-328. doi: 10.1111/j.1364-3703.2010.00672.x PMID: 21453427
    • (2011) Molecular Plant Pathology , vol.12 , pp. 307-328
    • Churchill, A.C.L.1
  • 2
    • 3042678784 scopus 로고    scopus 로고
    • The most important disease of a most important fruit
    • Ploetz R (2001) The most important disease of a most important fruit. Plant Health Instructor. doi: 10.1094/PHI-I-2001-0126-02 Available: http://www.apsnet.org/publications/apsnetfeatures/Pages/BlackSigatoka.aspx.
    • (2001) Plant Health Instructor
    • Ploetz, R.1
  • 3
    • 0037369509 scopus 로고    scopus 로고
    • Black Sigatoka: An increasing threat to banana cultivation
    • Marín DH, Romero RA, Guzmán M, Sutton TB (2003) Black Sigatoka: An increasing threat to banana cultivation. Plant Disease 87: 208-222. doi: 10.1094/pdis.2003.87.3.208
    • (2003) Plant Disease , vol.87 , pp. 208-222
    • Marín, D.H.1    Romero, R.A.2    Guzmán, M.3    Sutton, T.B.4
  • 5
    • 36248959036 scopus 로고    scopus 로고
    • Towards a molecular understanding of Mycosphaerella/banana interactions
    • Jain SM, Swennen R, editors. Plymouth: Science Publishers, Inc.
    • Balint-Kurti P, Churchill ACL (2004) Towards a molecular understanding of Mycosphaerella/banana interactions. In: Jain SM, Swennen R, editors. Banana Improvement: Cellular, Molecular Biology, and Induced Mutations. Plymouth: Science Publishers, Inc. pp 147-159.
    • (2004) Banana Improvement: Cellular, Molecular Biology, and Induced Mutations , pp. 147-159
    • Balint-Kurti, P.1    Churchill, A.C.L.2
  • 6
    • 17644387189 scopus 로고    scopus 로고
    • The CTB1 gene encoding a fungal polyketide synthase is required for cercosporin biosynthesis and fungal virulence of Cercospora nicotianae
    • PMID: 15915645
    • Choquer M, Dekkers KL, Chen HQ, Cao LH, Ueng PP, Daub ME, et al. (2005) The CTB1 gene encoding a fungal polyketide synthase is required for cercosporin biosynthesis and fungal virulence of Cercospora nicotianae. Molecular Plant-Microbe Interactions 18: 468-476. doi: 10.1094/MPMI-18-0468 PMID: 15915645
    • (2005) Molecular Plant-Microbe Interactions , vol.18 , pp. 468-476
    • Choquer, M.1    Dekkers, K.L.2    Chen, H.Q.3    Cao, L.H.4    Ueng, P.P.5    Daub, M.E.6
  • 7
    • 0038482195 scopus 로고    scopus 로고
    • Photodynamic oxygen activation by rubellin D, a phytotoxin produced by Ramularia collo-cygni (Sutton et Waller)
    • Heiser I, Sachs E, Liebermann B (2003) Photodynamic oxygen activation by rubellin D, a phytotoxin produced by Ramularia collo-cygni (Sutton et Waller). Physiological and Molecular Plant Pathology 62: 29-36. doi: 10.1016/s0885-5765(03)00007-9
    • (2003) Physiological and Molecular Plant Pathology , vol.62 , pp. 29-36
    • Heiser, I.1    Sachs, E.2    Liebermann, B.3
  • 9
    • 84875551371 scopus 로고    scopus 로고
    • Fragmentation of an aflatoxin-like gene cluster in a forest pathogen
    • PMID: 23448391
    • Bradshaw RE, Slot JC, Moore GG, Chettri P, de Wit P, Ehrlich KC, et al. (2013) Fragmentation of an aflatoxin-like gene cluster in a forest pathogen. New Phytologist 198: 525-535. doi: 10.1111/nph.12161 PMID: 23448391
    • (2013) New Phytologist , vol.198 , pp. 525-535
    • Bradshaw, R.E.1    Slot, J.C.2    Moore, G.G.3    Chettri, P.4    De Wit, P.5    Ehrlich, K.C.6
  • 10
    • 84921543986 scopus 로고    scopus 로고
    • Dothistromin toxin is a virulence factor in dothistroma needle blight of pines
    • Kabir MS, Ganley RJ, Bradshaw RE (2015) Dothistromin toxin is a virulence factor in dothistroma needle blight of pines. Plant Pathology 64: 225-234. doi: 10.1111/ppa.12229
    • (2015) Plant Pathology , vol.64 , pp. 225-234
    • Kabir, M.S.1    Ganley, R.J.2    Bradshaw, R.E.3
  • 11
    • 14944381233 scopus 로고
    • The phytotoxins of Mycosphaerella fijiensis, the causative agent of black Sigatoka disease of bananas and plantains
    • Stierle AA, Upadhyay R, Hershenhorn J, Strobel GA, Molina G (1991) The phytotoxins of Mycosphaerella fijiensis, the causative agent of black Sigatoka disease of bananas and plantains. Experientia 47: 853-859. doi: 10.1007/bf01922472
    • (1991) Experientia , vol.47 , pp. 853-859
    • Stierle, A.A.1    Upadhyay, R.2    Hershenhorn, J.3    Strobel, G.A.4    Molina, G.5
  • 12
    • 0025107424 scopus 로고
    • Fijiensin, the 1st phytotoxin from Mycosphaerella fijiensis, the causative agent of black Sigatoka disease
    • Upadhyay RK, Strobel GA, Coval SJ, Clardy J (1990) Fijiensin, the 1st phytotoxin from Mycosphaerella fijiensis, the causative agent of black Sigatoka disease. Experientia 46: 982-984. doi: 10.1007/bf01939396
    • (1990) Experientia , vol.46 , pp. 982-984
    • Upadhyay, R.K.1    Strobel, G.A.2    Coval, S.J.3    Clardy, J.4
  • 13
    • 67149146185 scopus 로고    scopus 로고
    • Occurence and bioactivities of funicone-related compounds
    • PMID: 19468317
    • Nicoletti R, Manzo E, Ciavatta ML (2009) Occurence and bioactivities of funicone-related compounds. International Journal of Molecular Sciences 10: 1430-1444. doi: 10.3390/ijms10041430 PMID: 19468317
    • (2009) International Journal of Molecular Sciences , vol.10 , pp. 1430-1444
    • Nicoletti, R.1    Manzo, E.2    Ciavatta, M.L.3
  • 14
    • 0036304258 scopus 로고    scopus 로고
    • Biologically active polyketide metabolites from an undetermined fungicolous hyphomycete resembling Cladosporium
    • PMID: 12088431
    • Holler U, Gloer JB, Wicklow DT (2002) Biologically active polyketide metabolites from an undetermined fungicolous hyphomycete resembling Cladosporium. Journal of Natural Products 65: 876-882. doi: 10.1021/np020097y PMID: 12088431
    • (2002) Journal of Natural Products , vol.65 , pp. 876-882
    • Holler, U.1    Gloer, J.B.2    Wicklow, D.T.3
  • 15
    • 0000365343 scopus 로고
    • Pentaketide metabolites of Verticillium dahliae: Identification of (+)-scytalone as a natural precursor to melanin
    • Bell AA, Stipanovic RD, Puhalla JE (1976) Pentaketide metabolites of Verticillium dahliae: Identification of (+)-scytalone as a natural precursor to melanin. Tetrahedron 32: 1353-1356. doi: 10.1016/0040-4020(76)85009-0
    • (1976) Tetrahedron , vol.32 , pp. 1353-1356
    • Bell, A.A.1    Stipanovic, R.D.2    Puhalla, J.E.3
  • 16
    • 0021864527 scopus 로고
    • Melanin biosynthesis and the metabolism of flaviolin and 2-hydroxyjuglone in Wangiella dermatitidis
    • PMID: 4037982
    • Wheeler MH, Stipanovic RD (1985) Melanin biosynthesis and the metabolism of flaviolin and 2-hydroxyjuglone in Wangiella dermatitidis. Archives of Microbiology 142: 234-241. doi: 10.1007/bf00693396 PMID: 4037982
    • (1985) Archives of Microbiology , vol.142 , pp. 234-241
    • Wheeler, M.H.1    Stipanovic, R.D.2
  • 17
    • 0016966293 scopus 로고
    • Use of mutants to establish (+)-scytalone as an intermediate in melanin biosynthesis by Verticillium dahliae
    • PMID: 945120
    • Bell AA, Puhalla JE, Tolmsoff WJ, Stipanovic RD (1976) Use of mutants to establish (+)-scytalone as an intermediate in melanin biosynthesis by Verticillium dahliae. Canadian Journal of Microbiology 22: 787-799. doi: 10.1139/m76-115 PMID: 945120
    • (1976) Canadian Journal of Microbiology , vol.22 , pp. 787-799
    • Bell, A.A.1    Puhalla, J.E.2    Tolmsoff, W.J.3    Stipanovic, R.D.4
  • 18
    • 0017440629 scopus 로고
    • Pentaketide metabolites of Verticillium dahliae 2. Accumulation of naphthol derivatives by aberrant-melanin mutant brm-2
    • PMID: 557166
    • Stipanovic RD, Bell AA (1977) Pentaketide metabolites of Verticillium dahliae. 2. Accumulation of naphthol derivatives by aberrant-melanin mutant brm-2. Mycologia 69: 164-172. doi: 10.2307/3758627 PMID: 557166
    • (1977) Mycologia , vol.69 , pp. 164-172
    • Stipanovic, R.D.1    Bell, A.A.2
  • 19
    • 0024789886 scopus 로고
    • Role of melanin in appressorium function
    • Howard RJ, Ferrari MA (1989) Role of melanin in appressorium function. Experimental Mycology 13: 403-418. doi: 10.1016/0147-5975(89)90036-4
    • (1989) Experimental Mycology , vol.13 , pp. 403-418
    • Howard, R.J.1    Ferrari, M.A.2
  • 20
    • 42649087431 scopus 로고    scopus 로고
    • Localized melanization of appressoria is required for pathogenicity of Venturia inaequalis
    • PMID: 18943680
    • Steiner U, Oerke EC (2007) Localized melanization of appressoria is required for pathogenicity of Venturia inaequalis. Phytopathology 97: 1222-1230. doi: 10.1094/phyto-97-10-1222 PMID: 18943680
    • (2007) Phytopathology , vol.97 , pp. 1222-1230
    • Steiner, U.1    Oerke, E.C.2
  • 21
    • 0033500459 scopus 로고    scopus 로고
    • Invasive hyphal growth in Wangiella dermatitidis is induced by stab inoculation and shows dependence upon melanin biosynthesis
    • PMID: 10669584
    • Brush L, Money NP (1999) Invasive hyphal growth in Wangiella dermatitidis is induced by stab inoculation and shows dependence upon melanin biosynthesis. Fungal Genetics and Biology 28: 190-200. doi: 10.1006/fgbi.1999.1176 PMID: 10669584
    • (1999) Fungal Genetics and Biology , vol.28 , pp. 190-200
    • Brush, L.1    Money, N.P.2
  • 22
    • 67650609884 scopus 로고    scopus 로고
    • Pseudocercospora griseola causing angular leaf spot on Phaseolus vulgaris produces 1,8-dihydroxynaphthalene-melanin
    • PMID: 19306112
    • Saparrat MCN, Fermoselle GE, Stenglein SA, Aulicino MB, Balatti PA (2009) Pseudocercospora griseola causing angular leaf spot on Phaseolus vulgaris produces 1,8-dihydroxynaphthalene-melanin. Mycopathologia 168: 41-47. doi: 10.1007/s11046-009-9194-8 PMID: 19306112
    • (2009) Mycopathologia , vol.168 , pp. 41-47
    • Saparrat, M.C.N.1    Fermoselle, G.E.2    Stenglein, S.A.3    Aulicino, M.B.4    Balatti, P.A.5
  • 23
    • 22744446097 scopus 로고    scopus 로고
    • Effect of melanization upon porosity of the cryptococcal cell wall
    • PMID: 16110778
    • Jacobson ES, Ikeda R (2005) Effect of melanization upon porosity of the cryptococcal cell wall. Medical Mycology 43: 327-333. doi: 10.1080/13693780412331271081 PMID: 16110778
    • (2005) Medical Mycology , vol.43 , pp. 327-333
    • Jacobson, E.S.1    Ikeda, R.2
  • 24
    • 0028356443 scopus 로고
    • Susceptibility of melanized and nonmelanized Cryptococcus neoformans to nitrogen-derived and oxygen-derived oxidants
    • PMID: 8005689
    • Wang YL, Casadevall A (1994) Susceptibility of melanized and nonmelanized Cryptococcus neoformans to nitrogen-derived and oxygen-derived oxidants. Infection and Immunity 62: 3004-3007. PMID: 8005689
    • (1994) Infection and Immunity , vol.62 , pp. 3004-3007
    • Wang, Y.L.1    Casadevall, A.2
  • 25
    • 84898636333 scopus 로고    scopus 로고
    • Singlet molecular oxygen generation by light-activated DHN-melanin of the fungal pathogen Mycosphaerella fijiensis in black Sigatoka disease of bananas
    • PMID: 24646830
    • Beltran-Garcia MJ, Prado FM, Oliveira MS, Ortiz-Mendoza D, Scalfo AC, Pessoa A, et al. (2014) Singlet molecular oxygen generation by light-activated DHN-melanin of the fungal pathogen Mycosphaerella fijiensis in black Sigatoka disease of bananas. Plos One 9(3): e91616. doi: 10.1371/journal.pone.0091616 PMID: 24646830
    • (2014) Plos One , vol.9 , Issue.3
    • Beltran-Garcia, M.J.1    Prado, F.M.2    Oliveira, M.S.3    Ortiz-Mendoza, D.4    Scalfo, A.C.5    Pessoa, A.6
  • 26
    • 84978901034 scopus 로고    scopus 로고
    • The Regents of the University of California
    • D.O.E. Joint Genome Institute (2016) Mycosphaerella fijiensis v2.0. The Regents of the University of California. Available: http://genome.jgi.doe.gov/Mycfi2/Mycfi2.home.html.
    • (2016) Mycosphaerella fijiensis V2.0
  • 27
    • 84930703152 scopus 로고    scopus 로고
    • The genomes of Mycosphaerella graminicola and M. fijiensis
    • Dean RA, Lichens-Park A, Chittaranjan K, editors. Berlin/Heidelberg: Springer
    • Goodwin SB, Kema GHJ (2014) The genomes of Mycosphaerella graminicola and M. fijiensis. In: Dean RA, Lichens-Park A, Chittaranjan K, editors. In: Genomics of plant-associated fungi: monocot pathogens. Berlin/Heidelberg: Springer. pp 123-140.
    • (2014) Genomics of Plant-associated Fungi: Monocot Pathogens , pp. 123-140
    • Goodwin, S.B.1    Kema, G.H.J.2
  • 28
    • 30544434099 scopus 로고    scopus 로고
    • Fungal secondary metabolism - From biochemistry to genomics
    • PMID: 16322742
    • Keller NP, Turner G, Bennett JW (2005) Fungal secondary metabolism - From biochemistry to genomics. Nature Reviews Microbiology 3: 937-947. doi: 10.1038/nrmicro1286 PMID: 16322742
    • (2005) Nature Reviews Microbiology , vol.3 , pp. 937-947
    • Keller, N.P.1    Turner, G.2    Bennett, J.W.3
  • 29
    • 33645962845 scopus 로고    scopus 로고
    • The structure of a ketoreductase determines the organization of the beta-carbon processing enzymes of modular polyketide synthases
    • PMID: 16564177
    • Keatinge-Clay AT, Stroud RM (2006) The structure of a ketoreductase determines the organization of the beta-carbon processing enzymes of modular polyketide synthases. Structure 14: 737-748. doi: 10.1016/j.str.2006.01.009 PMID: 16564177
    • (2006) Structure , vol.14 , pp. 737-748
    • Keatinge-Clay, A.T.1    Stroud, R.M.2
  • 30
    • 34250790717 scopus 로고    scopus 로고
    • Polyketides, proteins and genes in fungi: Programmed nano-machines begin to reveal their secrets
    • Cox RJ (2007) Polyketides, proteins and genes in fungi: programmed nano-machines begin to reveal their secrets. Organic & Biomolecular Chemistry 5: 2010-2026. doi: 10.1039/b704420h
    • (2007) Organic & Biomolecular Chemistry , vol.5 , pp. 2010-2026
    • Cox, R.J.1
  • 31
    • 0002877890 scopus 로고    scopus 로고
    • A mechanistic view of the fungal/plant interaction based on host-specific toxin studies
    • Kohmoto K, Yoder O, editors. Kluwer Academic Publishers, Dordrecht, The Netherlands
    • Yoder OC. (1998) A mechanistic view of the fungal/plant interaction based on host-specific toxin studies. In: Kohmoto K, Yoder O, editors. Molecular genetics of host-specific toxins in plant diseases. Kluwer Academic Publishers, Dordrecht, The Netherlands. pp 3-15.
    • (1998) Molecular Genetics of Host-specific Toxins in Plant Diseases , pp. 3-15
    • Yoder, O.C.1
  • 33
    • 0031079973 scopus 로고    scopus 로고
    • Metabolic pathway gene clusters in filamentous fungi
    • Keller NP, Hohn TM (1997) Metabolic pathway gene clusters in filamentous fungi. Fungal Genetics and Biology 21: 17-29. doi: 10.1006/fgbi.1997.0970
    • (1997) Fungal Genetics and Biology , vol.21 , pp. 17-29
    • Keller, N.P.1    Hohn, T.M.2
  • 34
    • 65549107863 scopus 로고    scopus 로고
    • Biosynthesis of the red pigment bikaverin in Fusarium fujikuroi: Genes, their function and regulation
    • PMID: 19400779
    • Wiemann P, Willmann A, Straeten M, Kleigrewe K, Beyer M, Humpf H-U, et al. (2009) Biosynthesis of the red pigment bikaverin in Fusarium fujikuroi: genes, their function and regulation. Molecular Microbiology 72: 931-946. doi: 10.1111/j.1365-2958.2009.06695.x PMID: 19400779
    • (2009) Molecular Microbiology , vol.72 , pp. 931-946
    • Wiemann, P.1    Willmann, A.2    Straeten, M.3    Kleigrewe, K.4    Beyer, M.5    Humpf, H.-U.6
  • 35
    • 1842850621 scopus 로고    scopus 로고
    • Completed sequence of aflatoxin pathway gene cluster in Aspergillus parasiticus
    • PMID: 15094053
    • Yu JJ, Bhatnagar D, Cleveland TE (2004) Completed sequence of aflatoxin pathway gene cluster in Aspergillus parasiticus. Febs Letters 564: 126-130. doi: 10.1016/S0014-5793(04)00327-8 PMID: 15094053
    • (2004) Febs Letters , vol.564 , pp. 126-130
    • Yu, J.J.1    Bhatnagar, D.2    Cleveland, T.E.3
  • 36
  • 37
    • 3142754894 scopus 로고    scopus 로고
    • Mutational analysis of peptidyl carrier protein and acyl carrier protein synthase unveils residues involved in protein-protein recognition
    • PMID: 15248752
    • Finking R, Mofid MR, Marahiel MA (2004) Mutational analysis of peptidyl carrier protein and acyl carrier protein synthase unveils residues involved in protein-protein recognition. Biochemistry 43: 8946-8956. doi: 10.1021/bi0496891 PMID: 15248752
    • (2004) Biochemistry , vol.43 , pp. 8946-8956
    • Finking, R.1    Mofid, M.R.2    Marahiel, M.A.3
  • 38
    • 28844465191 scopus 로고    scopus 로고
    • An iterative type I polyketide synthase PKSN catalyzes synthesis of the decaketide alternapyrone with regio-specific octa-methylation
    • Fujii I, Yoshida N, Shimomaki S, Oikawa H, Ebizuka Y (2005) An iterative type I polyketide synthase PKSN catalyzes synthesis of the decaketide alternapyrone with regio-specific octa-methylation. Chemistry & Biology 12: 1301-1309. doi: 10.1016/j.chembiol.2005.09.015
    • (2005) Chemistry & Biology , vol.12 , pp. 1301-1309
    • Fujii, I.1    Yoshida, N.2    Shimomaki, S.3    Oikawa, H.4    Ebizuka, Y.5
  • 40
    • 84939506515 scopus 로고    scopus 로고
    • The structural biology of biosynthetic megaenzymes
    • PMID: 26284673
    • Weissman KJ (2015) The structural biology of biosynthetic megaenzymes. Nature Chemical Biology 11: 660-670. doi: 10.1038/nchembio.1883 PMID: 26284673
    • (2015) Nature Chemical Biology , vol.11 , pp. 660-670
    • Weissman, K.J.1
  • 41
    • 0035573747 scopus 로고    scopus 로고
    • Characterization of four clustered and coregulated genes associated with fumonisin biosynthesis in Fusarium verticillioides
    • PMID: 11728154
    • Seo JA, Proctor RH, Plattner RD (2001) Characterization of four clustered and coregulated genes associated with fumonisin biosynthesis in Fusarium verticillioides. Fungal Genetics and Biology 34: 155-165. doi: 10.1006/fgbi.2001.1299 PMID: 11728154
    • (2001) Fungal Genetics and Biology , vol.34 , pp. 155-165
    • Seo, J.A.1    Proctor, R.H.2    Plattner, R.D.3
  • 42
    • 0029939996 scopus 로고    scopus 로고
    • Nmr structural studies of fumonisin B-1 and related compounds from Fusarium moniliforme
    • Blackwell BA, Edwards OE, Fruchier A, ApSimon JW, Miller JD (1996) Nmr structural studies of fumonisin B-1 and related compounds from Fusarium moniliforme. Fumonisins in Food 392: 75-91. doi: 10.1007/978-1-4899-1379-1-7
    • (1996) Fumonisins in Food , vol.392 , pp. 75-91
    • Blackwell, B.A.1    Edwards, O.E.2    Fruchier, A.3    ApSimon, J.W.4    Miller, J.D.5
  • 43
    • 0027700326 scopus 로고
    • Alanine is a precursor in the biosynthesis of fumonisin B1 by Fusarium moniliforme
    • PMID: 8008046
    • Branham BE, Plattner RD (1993) Alanine is a precursor in the biosynthesis of fumonisin B1 by Fusarium moniliforme. Mycopathologia 124: 99-104. doi: 10.1007/bf01103109 PMID: 8008046
    • (1993) Mycopathologia , vol.124 , pp. 99-104
    • Branham, B.E.1    Plattner, R.D.2
  • 44
    • 67749135577 scopus 로고    scopus 로고
    • A PLP-dependent polyketide chain releasing mechanism in the biosynthesis of mycotoxin fumonisins in Fusarium verticillioides
    • PMID: 19215074
    • Gerber R, Lou L, Du L (2009) A PLP-dependent polyketide chain releasing mechanism in the biosynthesis of mycotoxin fumonisins in Fusarium verticillioides. Journal of the American Chemical Society 131: 3148-3149. doi: 10.1021/ja8091054 PMID: 19215074
    • (2009) Journal of the American Chemical Society , vol.131 , pp. 3148-3149
    • Gerber, R.1    Lou, L.2    Du, L.3
  • 46
    • 77953375007 scopus 로고    scopus 로고
    • Solanapyrone synthase, a possible Diels-Alderase and iterative type I polyketide synthase encoded in a biosynthetic gene cluster from Alternaria solani
    • PMID: 20486243
    • Kasahara K, Miyamoto T, Fujimoto T, Oguri H, Tokiwano T, Oikawa H, et al. (2010) Solanapyrone synthase, a possible Diels-Alderase and iterative type I polyketide synthase encoded in a biosynthetic gene cluster from Alternaria solani. ChemBioChem 11: 1245-1252. doi: 10.1002/cbic.201000173 PMID: 20486243
    • (2010) ChemBioChem , vol.11 , pp. 1245-1252
    • Kasahara, K.1    Miyamoto, T.2    Fujimoto, T.3    Oguri, H.4    Tokiwano, T.5    Oikawa, H.6
  • 47
    • 66249111170 scopus 로고    scopus 로고
    • Towards prediction of metabolic products of polyketide synthases: An in silico analysis
    • PMID: 19360130
    • Yadav G, Gokhale RS, Mohanty D (2009) Towards prediction of metabolic products of polyketide synthases: an in silico analysis. Plos Computational Biology 5(4): e1000351. doi: 10.1371/journal.pcbi.1000351 PMID: 19360130
    • (2009) Plos Computational Biology , vol.5 , Issue.4
    • Yadav, G.1    Gokhale, R.S.2    Mohanty, D.3
  • 48
    • 24744433982 scopus 로고    scopus 로고
    • Evolutionary implications of bacterial polyketide synthases
    • PMID: 15958783
    • Jenke-Kodama H, Sandmann A, Muller R, Dittmann E (2005) Evolutionary implications of bacterial polyketide synthases. Molecular Biology and Evolution 22: 2027-2039. doi: 10.1093/molbev/msi193 PMID: 15958783
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 2027-2039
    • Jenke-Kodama, H.1    Sandmann, A.2    Muller, R.3    Dittmann, E.4
  • 49
    • 0032473567 scopus 로고    scopus 로고
    • Crystal structure of beta-ketoacyl-acyl carrier protein synthase II from E. coli reveals the molecular architecture of condensing enzymes
    • PMID: 9482715
    • Huang WJ, Jia J, Edwards P, Dehesh K, Schneider G, Lindqvist Y (1998) Crystal structure of beta-ketoacyl-acyl carrier protein synthase II from E. coli reveals the molecular architecture of condensing enzymes. Embo Journal 17: 1183-1191. doi: 10.1093/emboj/17.5.1183 PMID: 9482715
    • (1998) Embo Journal , vol.17 , pp. 1183-1191
    • Huang, W.J.1    Jia, J.2    Edwards, P.3    Dehesh, K.4    Schneider, G.5    Lindqvist, Y.6
  • 50
    • 64249084052 scopus 로고    scopus 로고
    • Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data
    • PMID: 19374984
    • Bachmann BO, Ravel J (2009) Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data. Methods in Enzymology 458: 181-217. doi: 10.1016/S0076-6879(09)04808-3 PMID: 19374984
    • (2009) Methods in Enzymology , vol.458 , pp. 181-217
    • Bachmann, B.O.1    Ravel, J.2
  • 51
    • 0000008358 scopus 로고
    • Genetic analysis of melanin-deficient, nonpathogenic mutants of Magnaporthe grisea
    • Chumley FG, Valent B (1990) Genetic analysis of melanin-deficient, nonpathogenic mutants of Magnaporthe grisea. Molecular Plant-Microbe Interactions 3: 135-143. doi: 10.1094/mpmi-3-135
    • (1990) Molecular Plant-Microbe Interactions , vol.3 , pp. 135-143
    • Chumley, F.G.1    Valent, B.2
  • 52
    • 0030198840 scopus 로고    scopus 로고
    • Cloning and characterization of a melanin biosynthetic THR1 reductase gene essential for appressorial penetration of Colletotrichum lagenarium
    • PMID: 8672814
    • Perpetua NS, Kubo Y, Takano Y, Furusawa I (1996) Cloning and characterization of a melanin biosynthetic THR1 reductase gene essential for appressorial penetration of Colletotrichum lagenarium. Molecular Plant-Microbe Interactions 9: 323-329. doi: 10.1094/mpmi-9-0323 PMID: 8672814
    • (1996) Molecular Plant-Microbe Interactions , vol.9 , pp. 323-329
    • Perpetua, N.S.1    Kubo, Y.2    Takano, Y.3    Furusawa, I.4
  • 53
    • 84868099493 scopus 로고    scopus 로고
    • Transcription Factor Amr1 Induces Melanin Biosynthesis and Suppresses Virulence in Alternaria brassicicola
    • PMID: 23133370
    • Cho Y, Srivastava A, Ohm RA, Lawrence CB, Wang K-H, Grigoriev IV, et al. (2012) Transcription Factor Amr1 Induces Melanin Biosynthesis and Suppresses Virulence in Alternaria brassicicola. Plos Pathogens 8(10): e1002974. doi: 10.1371/journal.ppat.1002974 PMID: 23133370
    • (2012) Plos Pathogens , vol.8 , Issue.10
    • Cho, Y.1    Srivastava, A.2    Ohm, R.A.3    Lawrence, C.B.4    Wang, K.-H.5    Grigoriev, I.V.6
  • 54
    • 70249111820 scopus 로고    scopus 로고
    • Biosynthesis and role in virulence of the histone deacetylase inhibitor depudecin from Alternaria brassicicola
    • PMID: 19737099
    • Wight WD, Kim KH, Lawrence CB, Walton JD (2009) Biosynthesis and role in virulence of the histone deacetylase inhibitor depudecin from Alternaria brassicicola. Mol Plant Microbe Interact 22: 1258-67. doi: 10.1094/MPMI-22-10-1258 PMID: 19737099
    • (2009) Mol Plant Microbe Interact , vol.22 , pp. 1258-1267
    • Wight, W.D.1    Kim, K.H.2    Lawrence, C.B.3    Walton, J.D.4
  • 55
    • 34247540410 scopus 로고    scopus 로고
    • Molecular analysis of the cercosporin biosynthetic gene cluster in Cercospora nicotianae
    • PMID: 17462021
    • Chen H, Lee M-H, Daub ME, Chung K-R (2007) Molecular analysis of the cercosporin biosynthetic gene cluster in Cercospora nicotianae. Molecular Microbiology 64: 755-770. doi: 10.1111/j.1365-2958.2007.05689.x PMID: 17462021
    • (2007) Molecular Microbiology , vol.64 , pp. 755-770
    • Chen, H.1    Lee, M.-H.2    Daub, M.E.3    Chung, K.-R.4
  • 56
    • 0037373801 scopus 로고    scopus 로고
    • Co-expression of 15 contiguous genes delineates a fumonisin biosynthetic gene cluster in Gibberella moniliformis
    • PMID: 12620260
    • Proctor RH, Brown DW, Plattner RD, Desjardins AE (2003) Co-expression of 15 contiguous genes delineates a fumonisin biosynthetic gene cluster in Gibberella moniliformis. Fungal Genetics and Biology 38: 237-249. doi: 10.1016/s1087-1845(02)00525-x PMID: 12620260
    • (2003) Fungal Genetics and Biology , vol.38 , pp. 237-249
    • Proctor, R.H.1    Brown, D.W.2    Plattner, R.D.3    Desjardins, A.E.4
  • 58
    • 0037016679 scopus 로고    scopus 로고
    • A plant phytotoxin, solanapyrone A, is an inhibitor of DNA polymerase beta and lambda
    • PMID: 11677229
    • Mizushina Y, Kamisuki S, Kasai N, Shimazaki N, Takemura M, Asahara H, et al. (2002) A plant phytotoxin, solanapyrone A, is an inhibitor of DNA polymerase beta and lambda. Journal of Biological Chemistry 277: 630-638. doi: 10.1074/jbc.M105144200 PMID: 11677229
    • (2002) Journal of Biological Chemistry , vol.277 , pp. 630-638
    • Mizushina, Y.1    Kamisuki, S.2    Kasai, N.3    Shimazaki, N.4    Takemura, M.5    Asahara, H.6
  • 59
    • 0028795177 scopus 로고
    • Phytotoxicity of solanapyrones produced by the fungus Ascochyta rabiei and their possible role in blight of chickpea (Cicer arietinum)
    • Kaur S (1995) Phytotoxicity of solanapyrones produced by the fungus Ascochyta rabiei and their possible role in blight of chickpea (Cicer arietinum). Plant Science 109: 23-29. doi: 10.1016/0168-9452(95)04144-j
    • (1995) Plant Science , vol.109 , pp. 23-29
    • Kaur, S.1
  • 60
    • 84927637228 scopus 로고    scopus 로고
    • Functional analyses of the Diels-Alderase gene sol5 of Ascochyta rabiei and Alternaria solani indicate that the solanapyrone phytotoxins are not required for pathogenicity
    • PMID: 25372118
    • Kim W, Park CM, Park JJ, Akamatsu HO, Peever TL, Xian M, et al. (2015) Functional analyses of the Diels-Alderase gene sol5 of Ascochyta rabiei and Alternaria solani indicate that the solanapyrone phytotoxins are not required for pathogenicity. Molecular Plant-Microbe Interactions 28: 482-496. doi: 10.1094/mpmi-08-14-0234-r PMID: 25372118
    • (2015) Molecular Plant-Microbe Interactions , vol.28 , pp. 482-496
    • Kim, W.1    Park, C.M.2    Park, J.J.3    Akamatsu, H.O.4    Peever, T.L.5    Xian, M.6
  • 62
    • 77957951532 scopus 로고    scopus 로고
    • The role of sphinganine analog mycotoxins on the virulence of plant pathogenic fungi
    • Sanchez-Rangel D, Plasencia J (2010) The role of sphinganine analog mycotoxins on the virulence of plant pathogenic fungi. Toxin Reviews 29: 73-86. doi: 10.3109/15569543.2010.515370
    • (2010) Toxin Reviews , vol.29 , pp. 73-86
    • Sanchez-Rangel, D.1    Plasencia, J.2
  • 63
    • 11144357212 scopus 로고    scopus 로고
    • Fumonisins disrupt sphingolipid metabolism, folate transport, and neural tube development in embryo culture and in vivo: A potential risk factor for human neural tube defects among populations consuming fumonisin-contaminated maize
    • PMID: 15051815
    • Marasas WFO, Riley RT, Hendricks KA, Stevens VL, Sadler TW, Gelineau-van Waes J, et al. (2004) Fumonisins disrupt sphingolipid metabolism, folate transport, and neural tube development in embryo culture and in vivo: A potential risk factor for human neural tube defects among populations consuming fumonisin-contaminated maize. Journal of Nutrition 134: 711-716. PMID: 15051815
    • (2004) Journal of Nutrition , vol.134 , pp. 711-716
    • Marasas, W.F.O.1    Riley, R.T.2    Hendricks, K.A.3    Stevens, V.L.4    Sadler, T.W.5    Gelineau-Van Waes, J.6
  • 64
    • 74549135806 scopus 로고    scopus 로고
    • Plant sphingolipids: Decoding the enigma of the Sphinx
    • PMID: 20028469
    • Pata MO, Hannun YA, Ng CKY (2010) Plant sphingolipids: decoding the enigma of the Sphinx. New Phytologist 185: 611-630. doi: 10.1111/j.1469-8137.2009.03123.x PMID: 20028469
    • (2010) New Phytologist , vol.185 , pp. 611-630
    • Pata, M.O.1    Hannun, Y.A.2    Ng, C.K.Y.3
  • 65
    • 37149054321 scopus 로고    scopus 로고
    • Transformation-mediated complementation of a FUM gene cluster deletion in Fusarium verticillioides restores both fumonisin production and pathogenicity on maize seedlings
    • PMID: 18052886
    • Glenn AE, Zitomer NC, Zimeri AM, Williams LD, Riley RT, Proctor RH (2008) Transformation-mediated complementation of a FUM gene cluster deletion in Fusarium verticillioides restores both fumonisin production and pathogenicity on maize seedlings. Molecular Plant-Microbe Interactions 21: 87-97. doi: 10.1094/mpmi-21-1-0087 PMID: 18052886
    • (2008) Molecular Plant-Microbe Interactions , vol.21 , pp. 87-97
    • Glenn, A.E.1    Zitomer, N.C.2    Zimeri, A.M.3    Williams, L.D.4    Riley, R.T.5    Proctor, R.H.6
  • 66
    • 0344747126 scopus 로고    scopus 로고
    • Mycotoxins reveal connections between plants and animals in apoptosis and ceramide signaling
    • PMID: 16465281
    • Gilchrist DG (1997) Mycotoxins reveal connections between plants and animals in apoptosis and ceramide signaling. Cell Death and Differentiation 4: 689-698. doi: 10.1038/sj.cdd.4400312 PMID: 16465281
    • (1997) Cell Death and Differentiation , vol.4 , pp. 689-698
    • Gilchrist, D.G.1
  • 69
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • PMID: 15034147
    • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797. doi: 10.1093/nar/gkh340 PMID: 15034147
    • (2004) Nucleic Acids Research , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 71
    • 33645816587 scopus 로고    scopus 로고
    • Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
    • PMID: 16563161
    • Keane TM, Creevey CJ, Pentony MM, Naughton TJ, Mclnerney JO (2006) Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evolutionary Biology 6: 29-29. doi: 10.1186/1471-2148-6-29 PMID: 16563161
    • (2006) BMC Evolutionary Biology , vol.6 , pp. 29
    • Keane, T.M.1    Creevey, C.J.2    Pentony, M.M.3    Naughton, T.J.4    Mclnerney, J.O.5
  • 72
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • PMID: 18367465
    • Le SQ, Gascuel O (2008) An improved general amino acid replacement matrix. Molecular Biology and Evolution 25: 1307-1320. doi: 10.1093/molbev/msn067 PMID: 18367465
    • (2008) Molecular Biology and Evolution , vol.25 , pp. 1307-1320
    • Le, S.Q.1    Gascuel, O.2
  • 73
    • 84860434973 scopus 로고    scopus 로고
    • raxmlGUI: A graphical front-end for RAxML
    • Silvestro D, Michalak I (2012) raxmlGUI: a graphical front-end for RAxML. Organisms Diversity & Evolution 12: 335-337. doi: 10.1007/s13127-011-0056-0
    • (2012) Organisms Diversity & Evolution , vol.12 , pp. 335-337
    • Silvestro, D.1    Michalak, I.2
  • 75
    • 47549090653 scopus 로고    scopus 로고
    • A rapid, effective method for profuse in vitro conidial production of Mycosphaerella fijiensis
    • Peraza-Echeverría L, Rodríguez-García C, Zapata-Salazar D (2008) A rapid, effective method for profuse in vitro conidial production of Mycosphaerella fijiensis. Australasian Plant Pathology 37: 460-463. doi: 10.1071/ap08042
    • (2008) Australasian Plant Pathology , vol.37 , pp. 460-463
    • Peraza-Echeverría, L.1    Rodríguez-García, C.2    Zapata-Salazar, D.3
  • 76
    • 84982358134 scopus 로고
    • A revised medium for rapid growth and bioassays with tobacco tissue cultures
    • Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiologia Plantarum 15: 473-497. doi: 10.1111/j.1399-3054.1962.tb08052.x
    • (1962) Physiologia Plantarum , vol.15 , pp. 473-497
    • Murashige, T.1    Skoog, F.2
  • 77
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin M (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMB-net. J. 17: 10-12. doi: 10.14806/ej.17.1.200
    • (2011) EMB-net. J. , vol.17 , pp. 10-12
    • Martin, M.1
  • 79
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • PMID: 19289445
    • Trapnell C, Pachter L, Salzberg SL (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111. doi: 10.1093/bioinformatics/btp120 PMID: 19289445
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 80
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq - A Python framework to work with high-throughput sequencing data
    • PMID: 25260700
    • Anders S, Pyl PT, Huber W (2015) HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics 31: 166-169. doi: 10.1093/bioinformatics/btu638 PMID: 25260700
    • (2015) Bioinformatics , vol.31 , pp. 166-169
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 81
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • PMID: 25516281
    • Love MI, Huber W, Anders S (2014) Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology 15(12): 550. doi: 10.1186/s13059-014-0550-8 PMID: 25516281
    • (2014) Genome Biology , vol.15 , Issue.12 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.