Functional traits for carbon access in macrophytes

PLoS ONE

Volumn 11, Issue 7, 2016, Pages

  Stepien, Courtney C ^a   Pfister, Catherine A ^a   Wootton, J Timothy ^a  

^a UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BICARBONATE; CARBON; CARBON DIOXIDE; DISSOLVED INORGANIC CARBON; SEA WATER; UNCLASSIFIED DRUG;

ALKALINITY; ARTICLE; BROWN ALGA; CARBON DIOXIDE TRANSPORT; CONTROLLED STUDY; GENETIC CONSERVATION; MACROPHYTE; NONHUMAN; PHOTOSYNTHESIS; PHYLOGENY; RED ALGA; SPECIES DIFFERENCE; SPECIES DIVERSITY; STRAMENOPILE; METABOLISM; PHYSIOLOGY;

CARBON; CARBON DIOXIDE; PHOTOSYNTHESIS; PHYLOGENY; RHODOPHYTA;

EID: 84978664195     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0159062     Document Type: Article

References (66)

1. Wootton JT, Pfister CA, Forester JD. Dynamic patterns and ecological impacts of declining ocean pH in a high-resolution multi-year dataset. Proc Natl Acad Sci. 2008 Dec 2; 105(48):18848-53. doi: 10.1073/pnas.0810079105 PMID: 19033205
2. Kroeker KJ, Kordas RL, Crim RN, Singh GG. Meta-analysis reveals negative yet variable effects of ocean acidification on marine organisms. Ecol Lett. 2010 Nov 1; 13(11):1419-34. doi: 10.1111/j.1461-0248.2010.01518.x PMID: 20958904
3. McCoy SJ, Pfister CA. Historical comparisons reveal altered competitive interactions in a guild of crustose coralline algae. Ecol Lett. 2014 Apr 1; 17(4):475-83. doi: 10.1111/ele.12247 PMID: 24422586
4. Giordano M, Beardall J, Raven JA. CO2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution. Annu Rev Plant Biol. 2005; 56:99-131. PMID: 15862091
5. Meyer M, Griffiths H. Origins and diversity of eukaryotic CO2 -concentrating mechanisms: lessons for the future. J Exp Bot. 2013; 64(2):769-86.
6. Raven J. Putting the C in phycology. Eur J Phycol. 1997; 32(4):319-33.
7. Hepburn CD, Pritchard DW, Cornwall CE, McLeod RJ, Beardall J, Raven JA, et al. Diversity of carbon use strategies in a kelp forest community: implications for a high CO2 ocean. Glob Change Biol. 2011 Jul 1; 17(7):2488-97.
8. Reinfelder JR. Carbon concentrating mechanisms in eukaryotic marine phytoplankton. Annu Rev Mar Sci. 2011 Jan 15; 3(1):291-315.
9. Maberly SC, Raven JA, Johnston AM. Discrimination between 12C and 13C by marine plants. Oecologia. 1992 Oct 1; 91(4):481-92.
10. Hurd CL. Water motion, marine macroalgal physiology, and production. J Phycol. 2000 Jun 1; 36 (3):453-72.
11. Cornwall CE, Hepburn CD, Pilditch CA, Hurd CL. Concentration boundary layers around complex assemblages of macroalgae: Implications for the effects of ocean acidification on understory coralline algae. Limnol Oceanogr. 2013; 58(1):121-30.
12. Marconi M, Giordano M, Raven JA. Impact of taxonomy, geography, and depth on ä13 C and ä15 N variation in a large collection of macroalgae. J Phycol. 2011 Oct 1; 47(5):1023-35. doi: 10.1111/j.1529-8817.2011.01045.x PMID: 27020183
13. Stepien CC. Impacts of geography, taxonomy and functional group on inorganic carbon use patterns in marine macrophytes. J Ecol. 2015 Nov 1; 103(6):1372-83.
14. Cornwall CE, Revill AT, Hurd CL. High prevalence of diffusive uptake of CO2 by macroalgae in a temperate subtidal ecosystem. Photosynth Res. 2015 Mar 5;1-10.
15. Raven JA, Johnston AM, Kübler JE, Korb R, McInroy SG, Handley LL, et al. Seaweeds in cold seas: evolution and carbon acquisition. Ann Bot. 2002 Oct 1; 90(4):525-36. PMID: 12324277
16. Kübler JE, Johnston AM, Raven JA. The effects of reduced and elevated CO2 and O2 on the seaweed Lomentaria articulata. Plant Cell Environ. 1999 Oct 1; 22(10):1303-10.
17. Low-Décarie E, Fussmann GF, Bell G. Aquatic primary production in a high-CO2 world. Trends Ecol Evol. 2014 Apr; 29(4):223-32. doi: 10.1016/j.tree.2014.02.006 PMID: 24631287
18. Axelsson L, Uusitalo J. Carbon acquisition strategies for marine macroalgae. Mar Biol. 1988 Feb 1; 97 (2):295-300.
19. Morel F, Hering JG, Morel F. Principles and applications of aquatic chemistry. New York: Wiley; 1993.
20. Lobban C, Harrison P. Seaweed ecology and physiology. Cambridge University Press; 1994. 366 p.
21. Anthony KRN, Kleypas J A., Gattuso J-P. Coral reefs modify their seawater carbon chemistry-implications for impacts of ocean acidification. Glob Change Biol. 2011 Dec 1; 17(12):3655-66.
22. Andersson AJ, Yeakel KL, Bates NR, de Putron SJ. Partial offsets in ocean acidification from changing coral reef biogeochemistry. Nat Clim Change. 2014 Jan; 4(1):56-61.
23. Brewer PG, Goldman JC. Alkalinity changes generated by phytoplankton growth. Limnol Oceanogr.1976 Jan; 21(1):108-17.
24. Fabregas J, Herrero C, Cabezas B, Abalde J. Growth and biochemical variability of the marine microalga Chlorella stigmatophora in batch cultures with different salinities and nutrient gradient concentration. Br Phycol J. 1987; 22(3):269-76.
25. Maberly SC. Exogenous sources of inorganic carbon for photosynthesis by marine macroalgae. J Phycol.1990 Sep 1; 26(3):439-49.
26. Murru M, Sandgren CD. Habitat matters for inorganic carbon acquisition in 38 species of red macroalgae (Rhodophyta) from Puget Sound, Washington, USA. J Phycol. 2004 Oct 1; 40(5):837-45.
27. Feb 1; 48(1):137-44. doi: 10.1111/j.1529-8817.2011.01085.x PMID: 27009658
28. Paine RT. Endothermy in bomb calorimetry. Limnol Oceanogr. 1966 Apr 1; 11(1):126-9.
29. Tilman D. Resource competition and community structure. Monogr Popul Biol. 1981; 17:1-296.
30. Middelboe AL, Hansen PJ. High pH in shallow-water macroalgal habitats. Mar Ecol Prog Ser. 2007; 338:107-17.
31. Verbruggen H, Maggs CA, Saunders GW, Le Gall L, Yoon H, De Clerck O. Data mining approach identifies research priorities and data requirements for resolving the red algal tree of life. BMC Evol Biol. 2010; 10(1):16.
32. Laubach T, von Haeseler A, Lercher MJ. TreeSnatcher plus: capturing phylogenetic trees from images. BMC Bioinformatics. 2012 May 24; 13:110. doi: 10.1186/1471-2105-13-110 PMID: 22624611
33. Silberfeld T, Leigh JW, Verbruggen H, Cruaud C, de Reviers B, Rousseau F. A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): Investigating the evolutionary nature of the "brown algal crown radiation". Mol Phylogenet Evol. 2010 Aug; 56(2):659-74. doi: 10.1016/j.ympev.2010.04.020 PMID: 20412862
34. Guiry MD, Guiry GM. Algae Base. World-wide electronic publication, National University of Ireland, Galway. http://www.algaebase.org. 2012;
35. Huelsenbeck JP, Nielsen R, Bollback JP. Stochastic mapping of morphological characters. Syst Biol. 2003 Apr 1; 52(2):131-58. PMID: 12746144
36. Paradis E, Bolker B, Claude J, Cuong HS, Desper R, Durand B, et al. ape: Analyses of Phylogenetics and Evolution. 2014. Available from: http://cran.r-project.org/web/packages/ape/index.html
37. Revell LJ. phytools: an R package for phylogenetic comparative biology (and other things). Methods Ecol Evol. 2012 Apr 1; 3(2):217-23.
38. Litsios G, Pellissier L, Forest F, Lexer C, Pearman PB, Zimmermann NE, et al. Trophic specialization influences the rate of environmental niche evolution in damselfishes (Pomacentridae). Proc R Soc Lond B Biol Sci. 2012 Sep 22; 279(1743):3662-9.
39. Lapiedra O, Sol D, Carranza S, Beaulieu JM. Behavioural changes and the adaptive diversification of pigeons and doves. Proc R Soc Lond B Biol Sci. 2013 Mar 22; 280(1755):20122893.
40. Blomberg SP, Garland T, Ives AR. Testing for phylogenetic signal in comparative data: behavioral traits are more labile. Evolution. 2003; 57(4):717-45. PMID: 12778543
41. Pagel M. Inferring the historical patterns of biological evolution. Nature. 1999 Oct 28; 401(6756):877-84. PMID: 10553904
42. Pierrot DEL, Wallace DWR. MS Excel Program Developed for CO2 System Calculations. ORNL/CDIAC-105a. Oak Ridge, TN: Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, U.S. Dept. of Energy; 2006.
43. Dickson AG, Millero FJ. A comparison of the equilibrium constants for the dissociation of carbonic acid in seawater media. Deep Sea Res Part Oceanogr Res Pap. 1987 Oct; 34(10):1733-43.
44. Lindstrom SC, Hughey JR, Martone PT. New, resurrected and redefined species of Mastocarpus (Phyllophoraceae, Rhodophyta) from the northeast Pacific. Phycologia. 2011 Nov; 50(6):661-83.
45. Sage RF, Christin P-A, Edwards EJ. The C4 plant lineages of planet Earth. J Exp Bot. 2011 May 1; 62 (9):3155-69. doi: 10.1093/jxb/err048 PMID: 21414957
46. Prasad V, Strömberg C a. E, Leaché AD, Samant B, Patnaik R, Tang L, et al. Late Cretaceous origin of the rice tribe provides evidence for early diversification in Poaceae. Nat Commun. 2011 Sep 20; 2:480. doi: 10.1038/ncomms1482 PMID: 21934664
47. Aliscioni S, Bell HL, Besnard G, Christin P-A, Columbus JT, Duvall MR, et al. New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins. New Phytol. 2012 Jan 1; 193 (2):304-12. doi: 10.1111/j.1469-8137.2011.03972.x PMID: 22115274
48. Chin NKM, Brown MT, Heads MJ. The biogeography of Lessoniaceae, with special reference to Macrocystis C. Agardh (Phaeophyta: Laminariales). Hydrobiologia. 1991 Jun; 215(1):1-11.
49. Yoon HS, Hackett JD, Ciniglia C, Pinto G, Bhattacharya D. A molecular timeline for the origin of photosynthetic eukaryotes. Mol Biol Evol. 2004 May; 21(5):809-18. PMID: 14963099
50. Christin P-A, Osborne CP, Chatelet DS, Columbus JT, Besnard G, Hodkinson TR, et al. Anatomical enablers and the evolution of C4 photosynthesis in grasses. Proc Natl Acad Sci. 2013 Jan 22; 110 (4):1381-6. doi: 10.1073/pnas.1216777110 PMID: 23267116
51. Rautenberger R, Fernández PA, Strittmatter M, Heesch S, Cornwall CE, Hurd CL, et al. Saturating light and not increased carbon dioxide under ocean acidification drives photosynthesis and growth in Ulva rigida (Chlorophyta). Ecol Evol. 2015 Feb 1; 5(4):874-88. doi: 10.1002/ece3.1382 PMID: 25750714
52. Sousa WP. Intertidal mosaics: patch size, propagule availability, and spatially variable patterns of succession. Ecology. 1984 Dec; 65(6):1918.
53. Goldman JC, Brewer PG. Effect of nitrogen source and growth rate on phytoplankton-mediated changes in alkalinity. Limnol Ocean. 1980; 25(2):352-7.
54. McConnaughey TA, Whelan JF. Calcification generates protons for nutrient and bicarbonate uptake. Earth-Sci Rev. 1997 Mar; 42(1-2):95-117.
55. Cornwall CE, Pilditch CA, Hepburn CD, Hurd CL. Canopy macroalgae influence understorey corallines' metabolic control of near-surface pH and oxygen concentration. Mar Ecol Prog Ser. 2015; 525:81-95.
56. Adey WH, Vassar JM. Colonization, succession and growth rates of tropical crustose coralline algae (Rhodophyta, Cryptonemiales)∗. Phycologia. 1975 Jun; 14(2):55-69.
57. Padilla DK. Algal structure defenses: form and calcification in resistance to tropical limpets. Ecology. 1989; 70(4):835-42.
58. Leonardos N, Read B, Thake B, Young JR. No mechanistic dependence of photosynthesis on calcification in the coccolithophorid Emiliania huxleyi (haptophyta). J Phycol. 2009 Oct 1; 45(5):1046-51. doi: 10.1111/j.1529-8817.2009.00726.x PMID: 27032349
59. Hellblom F, Axelsson L. External HCO3- dehydration maintained by acid zones in the plasma membrane is an important component of the photosynthetic carbon uptake in Ruppia cirrhosa. Photosynth Res. 2003 Aug 1; 77(2-3):173-81. PMID: 16228374
60. Hernández-Ayon JM, Zirino A, Dickson AG, Camiro-Vargas T, Valenzuela E. Estimating the contribution of organic bases from microalgae to the titration alkalinity in coastal seawaters. Limnol Oceanogr Methods. 2007; 5:225-32.
61. Leigh EG, Paine RT, Quinn JF, Suchanek TH. Wave energy and intertidal productivity. Proc Natl Acad Sci. 1987; 84(5):1314-8. PMID: 16593813
62. Larkum AWD, Koch E-MW, Kühl M. Diffusive boundary layers and photosynthesis of the epilithic algal community of coral reefs. Mar Biol. 2003 Mar 25; 142(6):1073-82.
63. Hurd CL, Cornwall CE, Currie K, Hepburn CD, McGraw CM, Hunter KA, et al. Metabolically induced pH fluctuations by some coastal calcifiers exceed projected 22nd century ocean acidification: a mechanism for differential susceptibility? Glob Change Biol. 2011 Oct 1; 17(10):3254-62.
64. Björk M, Axelsson L, Beer S. Why is Ulva intestinalis the only macroalga inhabiting isolated rockpools along the Swedish Atlantic coast? Mar Ecol Prog Ser. 2004; 284:109-16.
65. Guidone M, Thornber CS, Vincent E. Snail grazing facilitates growth of two morphologically similar bloom-forming Ulva species through different mechanisms. J Ecol. 2012; 100(5):1105-12.
66. Van Alstyne KL, Nelson TA, Ridgway RL. Environmental chemistry and chemical ecology of "green tide" seaweed blooms. Integr Comp Biol. 2015 May 13;icv035.