Putting the C in phycology

European Journal of Phycology

Volumn 32, Issue 4, 1997, Pages 319-333

  Raven, John A ^a  

^a UNIVERSITY OF DUNDEE   (United Kingdom)

Author keywords

Anaplerotic carboxylations; Bicarbonate; Carbon dioxide; Carbon concentrating mechanisms; Carboxylation; Evolution; Ribulose bisphosphate carboxylase oxygenase

Indexed keywords

EID: 0031444508     PISSN: 09670262     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0967026297001388     Document Type: Review

References (84)

1. ABELL, L.M. & SCHLOSS, J.V. (1991). Oxygenase side reactions of acetolactate synthase and other carbanion-forming enzymes. Biochemistry, 30: 7883-7887.
2. AL-MOGHRABI, S., GOIRAN, C., ALLEMAND, D., SPEZIALE, N. & JAUBERT, J. (1996). Inorganic carbon uptake for photosynthesis by the symbiotic coral - dinoflagellate association. II. Mechanisms for bicarbonate uptake. J. Exp. Mar. Biol Ecol., 199: 227-248.
3. ANNING, T., MIMER, N., MERRETT, M.J. & BROWNLEE, C. (1996). Costs and benefits of calcification in coccolithophorids. J. Mar. Syst., 9: 45-56.
4. BADGER, M.R. & PRICE, G.D. (1994). The role of carbonic anhydrase in photosynthesis. Annu. Rev. Plant Physiol. Plant Mol. Biol., 45: 369-392.
5. BEER, S. (1994). Mechanisms of inorganic carbon acquisition in marine macroalgae (with special reference to the Chlorophyta). Prog. Phycol. Res., 10: 199-207.
6. 2 environments. Mar. Ecol. Prog. Ser., 141: 199-204.
7. BEHRENFELD, M.J. & FALKOWSKI, P.G. (1997). Photosynthetic rates derived from satellite-based chlorophyll concentration. Limnol. Oceanogr., 42: 1-20.
8. 2 over Phanerozoic time. Am. J. Sci., 294: 36-91.
9. BERNER, R.A. & CANFIELD, D.E. (1989). A new model for atmospheric oxygen over Phanerozoic time. Am. J. Sci., 289: 333-361.
10. BLINKS, L.R. & NIELSEN, J.P. (1939). The cell sap of Hydrodictyon. J. Gen. Physiol., 23: 551-559.
11. BROWNLEE, C., NIMER, N., DONG, L.F. & MERRETT, M.J. (1994). Cellular regulation during calcification in Emiliania huxleyi. In The Haptophyte Algae (Green, J.C. & Leadbeater, B.S.C., editors), pp. 133-148. Clarendon Press, Oxford.
12. CALVIN, M. & BASSHAM, J.A. (1962). The Photosynthesis of Carbon Compounds. W.A. Benjamin, New York.
13. CAVALIER-SMITH, T., COUCH, J.A., THORNSTEINSEN, K.E., GILSON, P., DEANE, J.A., HILL, D.R.A. & MCFADDEN, G.I. (1996). Cryptomonad nuclear and nucleomorph 18S rRNA phylogeny Eur. J. Phycol., 31: 315-328.
14. COLMAN, B. & NORMAN, E.G. (1997). Serine synthesis in cyanobacteria by a non-photorespiratory pathway. Physiol. Plant., 100: 133-136.
15. DAVIES, D.D., GIOVANELLI, J. & AP REES, T. (1964). Plant Biochemistry. Blackwell Scientific, Oxford.
16. EILER, J.M., MOJZSIS, S.J. & ARRHENIUS, G. (1997). Carbon isotope evidence for early life. Nature, 386: 665.
17. FALKOWSKI, P.G. & RAVEN, J.A. (1997). Aquatic Photosynthesis. Blackwell Science, Malden, Mass.
18. 3 plants: role of carbonic anhydrase. Gen. Physiol. Biophys., 6: 617-636.
19. 2-concentrating mechanism. Biosystems, 37: 229-238.
20. 2 fixation. In Autotrophic Bacteria (Schlegel, H.G. & Bowren, B., editors), pp. 365-382. Scientific & Technical, Madison, WI/Springer, Berlin.
21. GROSS, W. (1993). Peroxisomes in algae: their distribution, biochemical function and phylogenetic importance. Prog. Phycol. Res., 9: 47-78.
22. HARTMAN, F.C. & HARPEL, M.R. (1994). Structure, function, regulation, and assembly of D-ribulose-1,5-bisphosphate carboxylase/oxygenase. Annu. Rev. Biochem., 63: 197-234.
23. HAYES, J.M. (1996). The earliest memories of life on earth. Nature, 384: 21-22.
24. HEWETT-EMMETT, D. & TASHIAN, R. E. (1996). Functional diversity, conservation and convergence in the evolution of the α-, β- and γ-carbonic anhydrase gene families. Mol. Phylog. Evoln. 5: 50-77.
25. HOLLAND, H.D. (1997). Evidence for life on earth more than 3850 million years ago. Science, 275: 38-39.
26. JOHNSTON, A.M. & RAVEN, J.A. (1986). Dark fixation studies on the intertidal macroalga Ascophyllum nodosum (Phaeophyta). J. Phycol., 22: 78-83.
27. JOHNSTON, A.M., MABERLY, S. & RAVEN, J.A. (1992). The acquisition of inorganic carbon by four red macroalgae from different habitats. Oecologia, 91: 481-492.
28. KANEKO, T., SATO, S., KOTANI, H., TANAKA, A., SAQMIZU E., NAKAMURA, Y., MIYAJIMA, N., HIROSAWA, M., SUGIURA, M., SASAMOTO, S., KIMURA, T., HOSOUCHI, T., MATSUNO, A., MURAKI, A., NAKAZAKI, N., NARUO, K., OKUMURA, S., SHIMPO, S., TAKEUCHI, C., WADA, T., WATANABE, A., YAMADA, M., YASUDA, M. & TABATA, S. (1996). Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC 6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res., 3: 109-136.
29. KARLSSON, J., CLARK, A., CHEN, Z., MASON, C.B., MORONEY, J.V. & SAMUELSSON, G. (1996). Chloroplastic carbonic anhydrase of Chlamydomonas reinhardtii: molecular cloning sequencing and western blot analysis of high-Ci-requiring mutants. In Abstracts of the First European Phycological Congress, Cologne, August 1996, abstract 248, p. 36. Cambridge University Press, Cambridge.
30. KONINGS, W.N. & OTTO, R. (1993). Energy transduction and solute transport in streptococci. Antonie van Leeuwenhoek, 49: 247-257.
31. KOOISTRA, W.H.C.F. & MEDLIN, L.K. (1996). The origin of the pigmented heterokonts and diatoms. J. Phycol., 32: 25a.
32. KÜBLER, J.E. ̈ RAVEN, J.A. (1994). Consequences of light-limitation for carbon acquisition in three rhodophytes. Mar. Ecol. Prog. Ser., 110: 203-208.
33. KÜBLER, J.E. & RAVEN, J.A. (1995). The interaction between inorganic carbon supply and light supply in Palmaria palmata (Rhodophyta). J. Phycol., 31: 369-375.
34. LARSSON, C., AXELSSON, L., RYBERG, H. & BEER, S. (1997). Photosynthetic carbon utilization by Enteromorpha intestinalis (Chlorophyta) from a Swedish rockpool. Eur. J. Phycol., 32: 49-54.
35. MABERLY, S.C. (1990). Exogenous sources of inorganic carbon for photosynthesis by marine macroalgae. J. Phycol., 26: 439-449.
36. 13C by marine plants. Oecologia, 91: 481-492.
37. 2 transport in Lemanea: interactions with the kinetics of ribulose bisphosphate carboxylase. J. Exp. Bot., 36: 610-622.
38. MACFARLANE, J.J. & RAVEN, J.A. (1989). Quantitative determination of the unstirred layer permeability and kinetic parameters of RUBISCO in Lemanea mamillosa. J. Exp. Bot., 40: 321-327.
39. MACFARLANE, J.J. & RAVEN, J.A. (1990). C, N and P nutrition of Lemanea mamillosa Kutz. (Batrachospermales, Rhodophyta) in the Dighty Burn, Angus, Scotland. Plant Cell Environ., 13: 1-13.
40. 2+ transport by the sarcoplasmic reticulum ATPase. Biochim. Biophys. Acta, 1318: 52-70.
41. MOJZIS, S.J., ARRHENIUS, G., MCKEEGAN, K.D., HARRISON, T.M., NUTMAN, A.P. & FRIEND, C.R.C. (1996). Evidence for life on earth before 3800 million years ago. Nature, 384: 55-59.
42. NORMAN, E.G. & COLMAN, B. (1991). Purification and characterisation of phosphoglycolate phosphatase from the cyanobacterium Coccochloris peniocystis. Plant Physiol., 95: 693-698.
43. OTTO, R., SONNENBERG, A.S.H., VELDKAMP, H. & KONINGS, W.N. (1980). Generation of an electrochemical proton gradient in Streptococcus cremoris by lactate efflux. Proc. Natl. Acad. Sci. U.S.A., 77: 5502-5506.
44. PAASCHE, E., BRUBAK, S., SKATTEBØL, S., YOUNG, J.R. & GREEN, J.C. (1996). Growth and calcification in the coccolithophorid Emiliania huxleyi (Haptophyceae) at low salinities. Phycologia, 35: 394-403.
45. 2 cells of Chlamydomonas reinhardti. Planta, 197: 352-361.
46. PETERS, A.F., VAN OPPEN, M.J.H., WIENCKE, C., STAM, W.T. & OLSEN, J.L. (1997). Phylogeny and historical ecology of the Desmarestiaceae (Phaeophyceae) support a southern hemisphere origin. J. Phycol., 33: 294-309.
47. POOLE, L.J. & RAVEN, J.A. (1997). The biology of Enteromorpha. Prog. Phycol. Res., 12: 1-148.
48. 2 in the chloroplast of microalgae. Sov. Plant Physiol., 39: 470-476.
49. 2 concentration. Final. Rast., 28: 494-502.
50. RAVEN, J.A. (1982). The energetics of freshwater algae: energy requirements for biosynthesis and volume regulation. New Phytol., 92: 1-20.
51. RAVEN, J.A. (1984). Energetics and Transport in Aquatic Plants. A.R. Liss, New York.
52. RAVEN, J.A. (1988). The iron and molybdenum use efficiencies in plant growth with different energy, carbon and nitrogen sources. New Phytol., 109: 279-287.
53. RAVEN, J.A. (1990). Prediction of Mn and Fe use efficiencies of phototrophic growth as a function of light availability for growth and C assimilation pathway. New Phytol., 116: 1-8.
54. RAVEN, J.A. (1991a). Implications of inorganic C utilization: ecology, evolution and geochemistry. Can. J. Bot., 69: 908-924.
55. 2 and temperature. Plant Cell Environ., 14: 779-794.
56. RAVEN, J.A. (1995a). Photosynthetic and non-photosynthetic roles of carbonic anhydrase in algae and cyanobacteria Phycologia, 34: 93-101.
57. RAVEN, J.A. (1995b). Symplasmic proton fluxes in photosynthesising and developing plant tissues. Biol. Rev., 70: 189-224.
58. RAVEN, J.A. (1996). Costs and benefits of low intracellular osmolarity of cells of freshwater algae. Functional Ecol., 9: 701-707.
59. RAVEN, J.A. (1997a). Inorganic carbon acquisition in marine autotrophs. Adv. Bot. Res., 27: 85-209.
60. 2 concentrating mechanisms: a direct role for thylakoid lumen acidification? Plant Cell Environ., 20: 147-154.
61. RAVEN, J.A. (1997c). The role of marine biota in the evolution of terrestrial biota: gases and genes. Biogeochemistry, in press.
62. RAVEN, J.A. & JOHNSTON, A.M. (1991). Inorganic carbon acquisition mechanisms in marine phytoplankton and their implications for the use of other resources. Limnol. Oceanogr., 36: 1701-1714.
63. 2 concentration. In Photosynthetic Responses to the Environment (Yamamoto, H.Y. & Smith, C.M., editors), pp. 102-112. American Society of Plant Physiologists, Rockville, Md.
64. RAVEN, J.A. & LUCAS, W.J. (1985). The energetics of carbon acquisition. In Inorganic Carbon Uptake by Aquatic Photosynthetic Organisms (Lucas, W.J. & Berry, J.A., editors), pp. 305-324. American Society of Plant Physiologists, Rockville, Md.
65. RAVEN, J.A., JOHNSTON, A.M. & SURIF, M.B. (1989). The photosynthetic apparatus as a phyletic character. In The Chromophyte Algae: Problems and Perspectives (Green, J.C., Diver, W.C. & Leadbeater, B.S., editors), pp. 41-60. Oxford University Press, Oxford.
66. 12C ratios: an analysis of possible mechanisms. Glob. Planetary Change, 81: 1-12.
67. 4-like photosynthetic characteristics. Proc. Natl. Acad. Sci. U.S.A., 88: 2883-2887.
68. RIEBESELL, U., WOLF-GLADROW, D. & SMETACK, V. (1993). Carbon dioxide limitation of phytoplankton growth rates. Nature, 361: 249-251.
69. RITCHIE, R.J., NADOLNY, C. & LARKUM, A.W. (1996). Driving forces for bicarbonate transport in the cyanobacterium Synechococcus R-2 (PCC 7942). Plant Physiol., 112: 1573-1584.
70. RUAN, Z.-S., ANATHARAM, V., CRAWFORD, I.T., AMBUDKAR, S.V., RHEE, S.Y., ALLISON, M.J. & MALONEY, P.C. (1992). Identification, purification and reconstitution of OXIT, the oxalate : formate antiport protein of Oxalobacter formigenes. J. Biol. Chem., 267: 10537-10543.
71. SIREVÅG, R. (1995). Carbon metabolism in anoxygenic photosynthetic bacteria. In Anoxygenic Photosynthetic Bacteria (Blankenship, R.E., Madigan, M.T. & Bayer, C.E., editors), pp. 871-883. Kluwer, Netherlands.
72. SMILLIE, R.M. (1963). Formation and function of soluble proteins in chloroplasts. Can. J. Bot., 41: 123-154.
73. STILLER, J.-W. & HALL, B.D. (1997). The origin of red algae: implications for plastid evolution. Proc. Natl. Acad. Sci. U.S.A., 94: 4520-4525.
74. 2 in suspensions of carbonic anhydrase-loaded plasma-membrane vesicles. Planta, 200: 358-368.
75. SURIF, M.B. & RAVEN, J.A. (1989a). Occurrence of diel changes in titratable acidity of plant cell contents: indicators of CAM-like metabolism in plants native to Scotland and comparison with plants from elsewhere. Trans. Bot. Soc. Edinb., 45: 235-244.
76. SURIF, M.B. & RAVEN, J.A. (1989b). Exogenous inorganic carbon sources for photosynthesis in seawater by members of the Fucales and Laminariales (Phaeophyta): ecological and taxonomic implications. Oecologia, 78: 97-105.
77. SUZUKI, K. (1995). Phosphoglycolate phosphatase-deficient mutants of Chlamydomonas reinhardtii capable of growth under air. Plant Cell Physiol., 36: 95-100.
78. 2 fixation in purple bacteria. In Anoxygenic Photosynthetic Bacteria (Blankenship, R.E., Madigan, M.T. & Bayer, C.E., editors), pp. 885-914. Kluwer, Netherlands.
79. 2-enrichment effects on eelgrass (Zostera marina L.) and bull kelp (Nereocystis luetkeana (Ment) P. & R.). Water Air Soil Pollution, 88: 383-391.
80. TOLBERT, N.E. & ZILL, L.P. (1956). Excretion of glycolic acid by algae during photosynthesis. J. Biol. Chem., 222: 895-902.
81. TURPIN, D.H., MILLER, A.G. & CANVIN, D.T. (1984). Carboxysome content of Synechococcus leopolensis (Cyanophyta) in response to inorganic carbon. J. Phycol., 20: 249-253.
82. WALKER, N.A., SMITH, F.A. & CATHERS, I.R. (1980). Bicarbonate assimilation by freshwater charophytes and higher plants. I. Membrane transport of bicarbonate is not proven. J. Membr. Biol., 57: 51-58.
83. WATSON, G.M.F. & TABITA, F.R. (1997). Microbial ribulose 1,5-bisphosphate carboxylase/oxygenase: a molecule for phylogenetic and enzymological investigation. FEMS Microbiol. Lett., 146: 13-22.
84. YOKOTA, A. & KITAOKA, S. (1989). Linearity and functioning forms in the carboxylase reaction of spinach ribulose, 1,5-bisphosphate carboxylase/oxygenase. Plant Cell Physiol., 30: 183-191.