메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

Composition of the outgrowth medium modulates wake-up kinetics and ampicillin sensitivity of stringent and relaxed Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; AMPICILLIN; ANTIINFECTIVE AGENT;

EID: 84978164829     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep22308     Document Type: Article
Times cited : (18)

References (55)
  • 1
  • 2
    • 84921791711 scopus 로고    scopus 로고
    • Diversity in (p)ppGpp metabolism and effectors
    • Liu, K., Bittner, A. N. & Wang, J. D. Diversity in (p)ppGpp metabolism and effectors. Curr Opin Microbiol 24, 72-9 (2015).
    • (2015) Curr Opin Microbiol , vol.24 , pp. 72-79
    • Liu, K.1    Bittner, A.N.2    Wang, J.D.3
  • 3
    • 84924662791 scopus 로고    scopus 로고
    • Many means to a common end: The intricacies of (p)ppGpp metabolism and its control of bacterial homeostasis
    • Gaca, A. O., Colomer-Winter, C. & Lemos, J. A. Many means to a common end: the intricacies of (p)ppGpp metabolism and its control of bacterial homeostasis. J Bacteriol 197, 1146-56 (2015).
    • (2015) J Bacteriol , vol.197 , pp. 1146-1156
    • Gaca, A.O.1    Colomer-Winter, C.2    Lemos, J.A.3
  • 4
    • 79961217635 scopus 로고    scopus 로고
    • The RelA/SpoT homolog (RSH) superfamily: Distribution and functional evolution of ppGpp synthetases and hydrolases across the tree of life
    • Atkinson, G. C., Tenson, T. & Hauryliuk, V. The RelA/SpoT homolog (RSH) superfamily: distribution and functional evolution of ppGpp synthetases and hydrolases across the tree of life. PLoS One 6, e23479 (2011).
    • (2011) PLoS One , vol.6
    • Atkinson, G.C.1    Tenson, T.2    Hauryliuk, V.3
  • 5
    • 84883487098 scopus 로고    scopus 로고
    • The ribosome triggers the stringent response by RelA via a highly distorted tRNA
    • Agirrezabala, X. et al. The ribosome triggers the stringent response by RelA via a highly distorted tRNA. EMBO Rep 14, 811-6 (2013).
    • (2013) EMBO Rep , vol.14 , pp. 811-816
    • Agirrezabala, X.1
  • 6
    • 0007825206 scopus 로고
    • Synthesis of guanosine tetra-and pentaphosphate requires the presence of a codon-specific, uncharged transfer ribonucleic acid in the acceptor site of ribosomes
    • Haseltine, W. A. & Block, R. Synthesis of guanosine tetra-and pentaphosphate requires the presence of a codon-specific, uncharged transfer ribonucleic acid in the acceptor site of ribosomes. Proc Natl Acad Sci USA 70, 1564-8 (1973).
    • (1973) Proc Natl Acad Sci USA , vol.70 , pp. 1564-1568
    • Haseltine, W.A.1    Block, R.2
  • 8
    • 43449090374 scopus 로고    scopus 로고
    • The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli
    • Traxler, M. F. et al. The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli. Mol Microbiol 68, 1128-48 (2008).
    • (2008) Mol Microbiol , vol.68 , pp. 1128-1148
    • Traxler, M.F.1
  • 9
    • 0035542686 scopus 로고    scopus 로고
    • Comparison of DeltarelA strains of Escherichia coli and Salmonella enterica serovar Typhimurium suggests a role for ppGpp in attenuation regulation of branched-chain amino acid biosynthesis
    • Tedin, K. & Norel, F. Comparison of DeltarelA strains of Escherichia coli and Salmonella enterica serovar Typhimurium suggests a role for ppGpp in attenuation regulation of branched-chain amino acid biosynthesis. J Bacteriol 183, 6184-96 (2001).
    • (2001) J Bacteriol , vol.183 , pp. 6184-6196
    • Tedin, K.1    Norel, F.2
  • 10
    • 20344363655 scopus 로고    scopus 로고
    • DksA potentiates direct activation of amino acid promoters by ppGpp
    • Paul, B. J., Berkmen, M. B. & Gourse, R. L. DksA potentiates direct activation of amino acid promoters by ppGpp. Proc Natl Acad Sci USA 102, 7823-8 (2005).
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 7823-7828
    • Paul, B.J.1    Berkmen, M.B.2    Gourse, R.L.3
  • 11
    • 84866038398 scopus 로고    scopus 로고
    • Direct binding targets of the stringent response alarmone (p)ppGpp
    • Kanjee, U., Ogata, K. & Houry, W. A. Direct binding targets of the stringent response alarmone (p)ppGpp. Mol Microbiol 85, 1029-43 (2012).
    • (2012) Mol Microbiol , vol.85 , pp. 1029-1043
    • Kanjee, U.1    Ogata, K.2    Houry, W.A.3
  • 12
    • 0025992789 scopus 로고
    • Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations
    • Xiao, H. et al. Residual guanosine 3′,5′-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations. J Biol Chem 266, 5980-90 (1991).
    • (1991) J Biol Chem , vol.266 , pp. 5980-5990
    • Xiao, H.1
  • 13
    • 0017708558 scopus 로고
    • In vitro degradation of guanosine 5′-diphosphate, 3′-diphosphate
    • Sy, J. In vitro degradation of guanosine 5′-diphosphate, 3′-diphosphate. Proc Natl Acad Sci USA 74, 5529-33 (1977).
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 5529-5533
    • Sy, J.1
  • 14
    • 0027483921 scopus 로고
    • SpoT-dependent accumulation of guanosine tetraphosphate in response to fatty acid starvation in Escherichia coli
    • Seyfzadeh, M., Keener, J. & Nomura, M. spoT-dependent accumulation of guanosine tetraphosphate in response to fatty acid starvation in Escherichia coli. Proc Natl Acad Sci USA 90, 11004-8 (1993).
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 11004-11008
    • Seyfzadeh, M.1    Keener, J.2    Nomura, M.3
  • 15
    • 18444368425 scopus 로고    scopus 로고
    • Iron limitation induces SpoT-dependent accumulation of ppGpp in Escherichia coli
    • Vinella, D., Albrecht, C., Cashel, M. & D'Ari, R. Iron limitation induces SpoT-dependent accumulation of ppGpp in Escherichia coli. Mol Microbiol 56, 958-70 (2005).
    • (2005) Mol Microbiol , vol.56 , pp. 958-970
    • Vinella, D.1    Albrecht, C.2    Cashel, M.3    D'Ari, R.4
  • 16
    • 0020415822 scopus 로고
    • Control of rRNA and tRNA syntheses in Escherichia coli by guanosine tetraphosphate
    • Ryals, J., Little, R. & Bremer, H. Control of rRNA and tRNA syntheses in Escherichia coli by guanosine tetraphosphate. J Bacteriol 151, 1261-8 (1982).
    • (1982) J Bacteriol , vol.151 , pp. 1261-1268
    • Ryals, J.1    Little, R.2    Bremer, H.3
  • 17
    • 0000975897 scopus 로고
    • A genetic locus for the regulation of ribonucleic acid synthesis
    • Stent, G. S. & Brenner, S. A genetic locus for the regulation of ribonucleic acid synthesis. Proc Natl Acad Sci USA 47, 2005-14 (1961).
    • (1961) Proc Natl Acad Sci USA , vol.47 , pp. 2005-2014
    • Stent, G.S.1    Brenner, S.2
  • 19
    • 84865384100 scopus 로고    scopus 로고
    • Bacterial stress responses as determinants of antimicrobial resistance
    • Poole, K. Bacterial stress responses as determinants of antimicrobial resistance. J Antimicrob Chemother 67, 2069-89 (2012).
    • (2012) J Antimicrob Chemother , vol.67 , pp. 2069-2089
    • Poole, K.1
  • 20
    • 0021925161 scopus 로고
    • Independence of cyclic AMP and relA gene stimulation of glycogen synthesis in intact Escherichia coli cells
    • Leckie, M. P., Tieber, V. L., Porter, S. E., Roth, W. G. & Dietzler, D. N. Independence of cyclic AMP and relA gene stimulation of glycogen synthesis in intact Escherichia coli cells. J Bacteriol 161, 133-40 (1985).
    • (1985) J Bacteriol , vol.161 , pp. 133-140
    • Leckie, M.P.1    Tieber, V.L.2    Porter, S.E.3    Roth, W.G.4    Dietzler, D.N.5
  • 21
    • 0001639179 scopus 로고
    • The growth of bacterial cultures
    • Monod, J. The growth of bacterial cultures. Annual Reviews in Microbiology 3, 371-394 (1949).
    • (1949) Annual Reviews in Microbiology , vol.3 , pp. 371-394
    • Monod, J.1
  • 22
    • 0015239820 scopus 로고
    • On the regulation of guanosine tetraphosphate levels in stringent and relaxed strains of Escherichia coli
    • Lazzarini, R. A., Cashel, M. & Gallant, J. On the regulation of guanosine tetraphosphate levels in stringent and relaxed strains of Escherichia coli. J Biol Chem 246, 4381-5 (1971).
    • (1971) J Biol Chem , vol.246 , pp. 4381-4385
    • Lazzarini, R.A.1    Cashel, M.2    Gallant, J.3
  • 23
    • 84857157480 scopus 로고    scopus 로고
    • PpGpp: Magic beyond RNA polymerase
    • Dalebroux, Z. D. & Swanson, M. S. ppGpp: magic beyond RNA polymerase. Nat Rev Microbiol 10, 203-12 (2012).
    • (2012) Nat Rev Microbiol , vol.10 , pp. 203-212
    • Dalebroux, Z.D.1    Swanson, M.S.2
  • 26
    • 0001672153 scopus 로고
    • Hybridization between Escherichia coli and Shigella
    • Luria, S. E. & Burrous, J. W. Hybridization between Escherichia coli and Shigella. J Bacteriol 74, 461-76 (1957).
    • (1957) J Bacteriol , vol.74 , pp. 461-476
    • Luria, S.E.1    Burrous, J.W.2
  • 27
    • 36749071435 scopus 로고    scopus 로고
    • Escherichia coli physiology in Luria-Bertani broth
    • Sezonov, G., Joseleau-Petit, D. & D'Ari, R. Escherichia coli physiology in Luria-Bertani broth. J Bacteriol 189, 8746-9 (2007).
    • (2007) J Bacteriol , vol.189 , pp. 8746-8749
    • Sezonov, G.1    Joseleau-Petit, D.2    D'Ari, R.3
  • 28
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K. A. & Wanner, B. L. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97, 6640-5 (2000).
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 29
    • 0347536251 scopus 로고    scopus 로고
    • Isolation of RNA polymerase suppressors of a (p)ppGpp deficiency
    • Murphy, H. & Cashel, M. Isolation of RNA polymerase suppressors of a (p)ppGpp deficiency. Methods Enzymol 371, 596-601 (2003).
    • (2003) Methods Enzymol , vol.371 , pp. 596-601
    • Murphy, H.1    Cashel, M.2
  • 30
    • 0017106681 scopus 로고
    • A rapid test for the rel A mutation in E. Coli
    • Uzan, M. & Danchin, A. A rapid test for the rel A mutation in E. coli. Biochem Biophys Res Commun 69, 751-8 (1976).
    • (1976) Biochem Biophys Res Commun , vol.69 , pp. 751-758
    • Uzan, M.1    Danchin, A.2
  • 31
    • 0018072926 scopus 로고
    • Correlation between the serine sensitivity and the derepressibility of the ilv genes in Escherichia coli relAmutants
    • Uzan, M. & Danchin, A. Correlation between the serine sensitivity and the derepressibility of the ilv genes in Escherichia coli relAmutants. Mol Gen Genet 165, 21-30 (1978).
    • (1978) Mol Gen Genet , vol.165 , pp. 21-30
    • Uzan, M.1    Danchin, A.2
  • 32
    • 4243745618 scopus 로고
    • Physiological effects of the RNA control (Rc) gene in E. coli
    • Alfoeldi, L., Stent, G. S., Hoogs, M. & Hill, R. Physiological Effects of the Rna Control (Rc) Gene in E. Coli. Z Vererbungsl 94, 285-302 (1963).
    • (1963) Z Vererbungsl , vol.94 , pp. 285-302
    • Alfoeldi, L.1    Stent, G.S.2    Hoogs, M.3    Hill, R.4
  • 33
    • 0018396918 scopus 로고
    • Growth inhibition as a consequence of antagonism between related amino acids: Effect of valine in Escherichia coli K-12
    • De Felice, M., Levinthal, M., Iaccarino, M. & Guardiola, J. Growth inhibition as a consequence of antagonism between related amino acids: effect of valine in Escherichia coli K-12. Microbiol Rev 43, 42-58 (1979).
    • (1979) Microbiol Rev , vol.43 , pp. 42-58
    • De Felice, M.1    Levinthal, M.2    Iaccarino, M.3    Guardiola, J.4
  • 34
    • 0019461166 scopus 로고
    • Molecular basis of valine resistance in Escherichia coli K-12
    • Lawther, R. P. et al. Molecular basis of valine resistance in Escherichia coli K-12. Proc Natl Acad Sci USA 78, 922-5 (1981).
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 922-925
    • Lawther, R.P.1
  • 35
    • 15744391433 scopus 로고    scopus 로고
    • A mathematical model for the branched chain amino acid biosynthetic pathways of Escherichia coli K12
    • Yang, C. R., Shapiro, B. E., Hung, S. P., Mjolsness, E. D. & Hatfield, G. W. A mathematical model for the branched chain amino acid biosynthetic pathways of Escherichia coli K12. J Biol Chem 280, 11224-32 (2005).
    • (2005) J Biol Chem , vol.280 , pp. 11224-11232
    • Yang, C.R.1    Shapiro, B.E.2    Hung, S.P.3    Mjolsness, E.D.4    Hatfield, G.W.5
  • 36
    • 0022652442 scopus 로고
    • The rate of killing of Escherichia coli by beta-lactam antibiotics is strictly proportional to the rate of bacterial growth
    • Tuomanen, E., Cozens, R., Tosch, W., Zak, O. & Tomasz, A. The rate of killing of Escherichia coli by beta-lactam antibiotics is strictly proportional to the rate of bacterial growth. J Gen Microbiol 132, 1297-304 (1986).
    • (1986) J Gen Microbiol , vol.132 , pp. 1297-1304
    • Tuomanen, E.1    Cozens, R.2    Tosch, W.3    Zak, O.4    Tomasz, A.5
  • 37
    • 84883342218 scopus 로고    scopus 로고
    • (P)ppGpp controls bacterial persistence by stochastic induction of toxinantitoxin activity
    • Maisonneuve, E., Castro-Camargo, M. & Gerdes, K. (p)ppGpp controls bacterial persistence by stochastic induction of toxinantitoxin activity. Cell 154, 1140-50 (2013).
    • (2013) Cell , vol.154 , pp. 1140-1150
    • Maisonneuve, E.1    Castro-Camargo, M.2    Gerdes, K.3
  • 38
    • 84879031775 scopus 로고    scopus 로고
    • Dormancy is not necessary or sufficient for bacterial persistence
    • Orman, M. A. & Brynildsen, M. P. Dormancy is not necessary or sufficient for bacterial persistence. Antimicrob Agents Chemother 57, 3230-9 (2013).
    • (2013) Antimicrob Agents Chemother , vol.57 , pp. 3230-3239
    • Orman, M.A.1    Brynildsen, M.P.2
  • 39
    • 0015451273 scopus 로고
    • Pedigrees of some mutant strains of Escherichia coli K-12
    • Bachmann, B. J. Pedigrees of some mutant strains of Escherichia coli K-12. Bacteriol Rev 36, 525-57 (1972).
    • (1972) Bacteriol Rev , vol.36 , pp. 525-557
    • Bachmann, B.J.1
  • 40
    • 84890289940 scopus 로고    scopus 로고
    • GTP dysregulation in Bacillus subtilis cells lacking (p)ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes
    • Kriel, A. et al. GTP dysregulation in Bacillus subtilis cells lacking (p)ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes. J Bacteriol 196, 189-201 (2014).
    • (2014) J Bacteriol , vol.196 , pp. 189-201
    • Kriel, A.1
  • 41
    • 0000086718 scopus 로고
    • Neutralization of the amino acid sensitivity of rcrel Escherichia coli
    • Alfoeldi, L. & Kerekes, E. Neutralization of the Amino Acid Sensitivity of Rcrel Escherichia Coli. Biochim Biophys Acta 91, 155-7 (1964).
    • (1964) Biochim Biophys Acta , vol.91 , pp. 155-157
    • Alfoeldi, L.1    Kerekes, E.2
  • 42
    • 0026332292 scopus 로고
    • Cysteine, even in low concentrations, induces transient amino acid starvation in Escherichia coli
    • Sorensen, M. A. & Pedersen, S. Cysteine, even in low concentrations, induces transient amino acid starvation in Escherichia coli. J Bacteriol 173, 5244-6 (1991).
    • (1991) J Bacteriol , vol.173 , pp. 5244-5246
    • Sorensen, M.A.1    Pedersen, S.2
  • 43
    • 0034682744 scopus 로고    scopus 로고
    • Nucleoid proteins stimulate stringently controlled bacterial promoters: A link between the cAMP-CRP and the (p) ppGpp regulons in Escherichia coli
    • Johansson, J. et al. Nucleoid proteins stimulate stringently controlled bacterial promoters: a link between the cAMP-CRP and the (p) ppGpp regulons in Escherichia coli. Cell 102, 475-85 (2000).
    • (2000) Cell , vol.102 , pp. 475-485
    • Johansson, J.1
  • 44
    • 0019141788 scopus 로고
    • Augmentation of glycogen synthesis under stringent control in Escherichia coli
    • Taguchi, M., Izui, K. & Katsuki, H. Augmentation of glycogen synthesis under stringent control in Escherichia coli. J Biochem 88, 379-87 (1980).
    • (1980) J Biochem , vol.88 , pp. 379-387
    • Taguchi, M.1    Izui, K.2    Katsuki, H.3
  • 45
    • 0018931623 scopus 로고
    • The relA gene is not required for glycogen accumulation during NH4 + starvation of Escherichia coli
    • Leckie, M. P., Tieber, V. L., Porter, S. E. & Dietzler, D. N. The relA gene is not required for glycogen accumulation during NH4 + starvation of Escherichia coli. Biochem Biophys Res Commun 95, 924-31 (1980).
    • (1980) Biochem Biophys Res Commun , vol.95 , pp. 924-931
    • Leckie, M.P.1    Tieber, V.L.2    Porter, S.E.3    Dietzler, D.N.4
  • 46
    • 0018896934 scopus 로고
    • Regulation of cyclic AMP of the ilvB-encoded biosynthetic acetohydroxy acid synthase in Escherichia coli K-12
    • Sutton, A. & Freundlich, M. Regulation of cyclic AMP of the ilvB-encoded biosynthetic acetohydroxy acid synthase in Escherichia coli K-12. Mol Gen Genet 178, 179-83 (1980).
    • (1980) Mol Gen Genet , vol.178 , pp. 179-183
    • Sutton, A.1    Freundlich, M.2
  • 47
    • 35748932045 scopus 로고    scopus 로고
    • Topology of the global regulatory network of carbon limitation in Escherichia coli
    • Hardiman, T., Lemuth, K., Keller, M. A., Reuss, M. & Siemann-Herzberg, M. Topology of the global regulatory network of carbon limitation in Escherichia coli. J Biotechnol 132, 359-74 (2007).
    • (2007) J Biotechnol , vol.132 , pp. 359-374
    • Hardiman, T.1    Lemuth, K.2    Keller, M.A.3    Reuss, M.4    Siemann-Herzberg, M.5
  • 48
    • 77954369912 scopus 로고    scopus 로고
    • The frequency of persisters in Escherichia coli reflects the kinetics of awakening from dormancy
    • Joers, A., Kaldalu, N. & Tenson, T. The frequency of persisters in Escherichia coli reflects the kinetics of awakening from dormancy. J Bacteriol 192, 3379-84 (2010).
    • (2010) J Bacteriol , vol.192 , pp. 3379-3384
    • Joers, A.1    Kaldalu, N.2    Tenson, T.3
  • 49
    • 84872241785 scopus 로고    scopus 로고
    • Bacterial persistence and toxin-antitoxin loci
    • Gerdes, K. & Maisonneuve, E. Bacterial persistence and toxin-antitoxin loci. Annu Rev Microbiol 66, 103-23 (2012).
    • (2012) Annu Rev Microbiol , vol.66 , pp. 103-123
    • Gerdes, K.1    Maisonneuve, E.2
  • 50
    • 0029121141 scopus 로고
    • Direct correlation between overproduction of guanosine 3′,5′-bispyrophosphate (ppGpp) and penicillin tolerance in Escherichia coli
    • Rodionov, D. G. & Ishiguro, E. E. Direct correlation between overproduction of guanosine 3′,5′-bispyrophosphate (ppGpp) and penicillin tolerance in Escherichia coli. J Bacteriol 177, 4224-9 (1995).
    • (1995) J Bacteriol , vol.177 , pp. 4224-4229
    • Rodionov, D.G.1    Ishiguro, E.E.2
  • 51
    • 84897948007 scopus 로고    scopus 로고
    • The role of metabolism in bacterial persistence
    • Amato, S. M. et al. The role of metabolism in bacterial persistence. Front Microbiol 5, 70 (2014).
    • (2014) Front Microbiol , vol.5 , pp. 70
    • Amato, S.M.1
  • 52
    • 79960436674 scopus 로고    scopus 로고
    • Age of inoculum strongly influences persister frequency and can mask effects of mutations implicated in altered persistence
    • Luidalepp, H., Joers, A., Kaldalu, N. & Tenson, T. Age of inoculum strongly influences persister frequency and can mask effects of mutations implicated in altered persistence. J Bacteriol 193, 3598-605 (2011).
    • (2011) J Bacteriol , vol.193 , pp. 3598-3605
    • Luidalepp, H.1    Joers, A.2    Kaldalu, N.3    Tenson, T.4
  • 54
    • 84945206290 scopus 로고    scopus 로고
    • A General Method for Measuring Persister Levels in Escherichia coli Cultures
    • Kaldalu, N., Joers, A., Ingelman, H. & Tenson, T. A General Method for Measuring Persister Levels in Escherichia coli Cultures. Methods Mol Biol 1333, 29-42 (2016).
    • (2016) Methods Mol Biol , vol.1333 , pp. 29-42
    • Kaldalu, N.1    Joers, A.2    Ingelman, H.3    Tenson, T.4
  • 55
    • 58149179979 scopus 로고    scopus 로고
    • EcoCyc: A comprehensive view of Escherichia coli biology
    • Keseler, I. M. et al. EcoCyc: a comprehensive view of Escherichia coli biology. Nucleic Acids Res 37, D464-70 (2009).
    • (2009) Nucleic Acids Res , vol.37 , pp. D464-D470
    • Keseler, I.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.