-
1
-
-
80052505891
-
Enteropathogenic Escherichia coli infection in children
-
Ochoa, T. J. & Contreras, C. A. Enteropathogenic Escherichia coli infection in children. Curr. Opin. Infect. Dis. 24, 478-483 (2011).
-
(2011)
Curr. Opin. Infect. Dis.
, vol.24
, pp. 478-483
-
-
Ochoa, T.J.1
Contreras, C.A.2
-
2
-
-
84870010706
-
The global enteric multicenter study (GEMS) of diarrheal disease in infants and young children in developing countries: Epidemiologic and clinical methods of the case/control study
-
Kotloff, K. L. et al. The global enteric multicenter study (GEMS) of diarrheal disease in infants and young children in developing countries: epidemiologic and clinical methods of the case/control study. Clin. Infect. Dis. 55(Suppl 4), S232-S245 (2012).
-
(2012)
Clin. Infect. Dis.
, vol.55
, pp. S232-S245
-
-
Kotloff, K.L.1
-
3
-
-
84880508179
-
Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): A prospective, case-control study
-
Kotloff, K. L. et al. Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study. Lancet 382, 209-222 (2013).
-
(2013)
Lancet
, vol.382
, pp. 209-222
-
-
Kotloff, K.L.1
-
4
-
-
0028945803
-
A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens
-
McDaniel, T. K., Jarvis, K. G., Donnenberg, M. S. & Kaper, J. B. A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens. Proc. Natl Acad. Sci. USA 92, 1664-1668 (1995).
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 1664-1668
-
-
McDaniel, T.K.1
Jarvis, K.G.2
Donnenberg, M.S.3
Kaper, J.B.4
-
5
-
-
0031895930
-
The complete sequence of the locus of enterocyte effacement (LEE) from enteropathogenic Escherichia coli E2348/69
-
Elliott, S. J. et al. The complete sequence of the locus of enterocyte effacement (LEE) from enteropathogenic Escherichia coli E2348/69. Mol. Microbiol. 28, 1-4 (1998).
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 1-4
-
-
Elliott, S.J.1
-
6
-
-
0031823632
-
Molecular evolution of a pathogenicity island from enterohemorrhagic Escherichia coli O157:H7
-
Perna, N. T. et al. Molecular evolution of a pathogenicity island from enterohemorrhagic Escherichia coli O157:H7. Infect. Immun. 66, 3810-3817 (1998).
-
(1998)
Infect. Immun.
, vol.66
, pp. 3810-3817
-
-
Perna, N.T.1
-
7
-
-
0036016818
-
Characterization and evidence ofmobilization of the LEE pathogenicity island of rabbit-specific strains of enteropathogenic Escherichia coli
-
Tauschek, M., Strugnell, R. A. & Robins-Browne, R. M. Characterization and evidence ofmobilization of the LEE pathogenicity island of rabbit-specific strains of enteropathogenic Escherichia coli. Mol. Microbiol. 44, 1533-1550 (2002).
-
(2002)
Mol. Microbiol.
, vol.44
, pp. 1533-1550
-
-
Tauschek, M.1
Strugnell, R.A.2
Robins-Browne, R.M.3
-
8
-
-
1842508193
-
Pathogenic Escherichia coli
-
Kaper, J. B., Nataro, J. P. & Mobley, H. L. Pathogenic Escherichia coli. Nature Rev. Microbiol. 2, 123-140 (2004).
-
(2004)
Nature Rev. Microbiol.
, vol.2
, pp. 123-140
-
-
Kaper, J.B.1
Nataro, J.P.2
Mobley, H.L.3
-
9
-
-
15244348050
-
Shiga-toxin-producing Escherichia coli and haemolytic uraemic syndrome
-
Tarr, P. I., Gordon, C. A. & Chandler, W. L. Shiga-toxin-producing Escherichia coli and haemolytic uraemic syndrome. Lancet 365, 1073-1086 (2005).
-
(2005)
Lancet
, vol.365
, pp. 1073-1086
-
-
Tarr, P.I.1
Gordon, C.A.2
Chandler, W.L.3
-
10
-
-
84866462420
-
Infection strategies of enteric pathogenic Escherichia coli
-
Clements, A., Young, J. C., Constantinou, N. & Frankel, G. Infection strategies of enteric pathogenic Escherichia coli. Gut Microbes 3, 71-87 (2012).
-
(2012)
Gut Microbes
, vol.3
, pp. 71-87
-
-
Clements, A.1
Young, J.C.2
Constantinou, N.3
Frankel, G.4
-
11
-
-
78049291873
-
Escherichia coli O157
-
Pennington, H. Escherichia coli O157. Lancet 376, 1428-1435 (2010).
-
(2010)
Lancet
, vol.376
, pp. 1428-1435
-
-
Pennington, H.1
-
12
-
-
0021950215
-
Plasmid-mediated factors conferring diffuse and localized adherence of enteropathogenic Escherichia coli
-
Nataro, J. P., Scaletsky, I. C., Kaper, J. B., Levine, M. M. & Trabulsi, L. R. Plasmid-mediated factors conferring diffuse and localized adherence of enteropathogenic Escherichia coli. Infect. Immun. 48, 378-383 (1985).
-
(1985)
Infect. Immun.
, vol.48
, pp. 378-383
-
-
Nataro, J.P.1
Scaletsky, I.C.2
Kaper, J.B.3
Levine, M.M.4
Trabulsi, L.R.5
-
13
-
-
0032568984
-
Type IV pili, transient bacterial aggregates, and virulence of enteropathogenic Escherichia coli
-
Bieber, D. et al. Type IV pili, transient bacterial aggregates, and virulence of enteropathogenic Escherichia coli. Science 280, 2114-2118 (1998).
-
(1998)
Science
, vol.280
, pp. 2114-2118
-
-
Bieber, D.1
-
14
-
-
0026482190
-
A plasmid-encoded type IV fimbrial gene of enteropathogenic Escherichia coli associated with localized adherence
-
Donnenberg, M. S., Giron, J. A., Nataro, J. P. & Kaper, J. B. A plasmid-encoded type IV fimbrial gene of enteropathogenic Escherichia coli associated with localized adherence. Mol. Microbiol. 6, 3427-3437 (1992).
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 3427-3437
-
-
Donnenberg, M.S.1
Giron, J.A.2
Nataro, J.P.3
Kaper, J.B.4
-
15
-
-
0029879021
-
A cluster of fourteen genes from enteropathogenic Escherichia coli is sufficient for the biogenesis of a type IV pilus
-
Stone, K. D., Zhang, H. Z., Carlson, L. K. & Donnenberg, M. S. A cluster of fourteen genes from enteropathogenic Escherichia coli is sufficient for the biogenesis of a type IV pilus. Mol. Microbiol. 20, 325-337 (1996).
-
(1996)
Mol. Microbiol.
, vol.20
, pp. 325-337
-
-
Stone, K.D.1
Zhang, H.Z.2
Carlson, L.K.3
Donnenberg, M.S.4
-
16
-
-
0031006045
-
Biogenesis of the bundle-forming pilus of enteropathogenic Escherichia coli: Reconstitution of fimbriae in recombinant E. Coli and role of DsbA in pilin stability - A review
-
Donnenberg, M. S., Zhang, H. Z. & Stone, K. D. Biogenesis of the bundle-forming pilus of enteropathogenic Escherichia coli: reconstitution of fimbriae in recombinant E. coli and role of DsbA in pilin stability - a review. Gene 192, 33-38 (1997).
-
(1997)
Gene
, vol.192
, pp. 33-38
-
-
Donnenberg, M.S.1
Zhang, H.Z.2
Stone, K.D.3
-
18
-
-
84881092850
-
Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli
-
Hazen, T. H. et al. Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli. Proc. Natl Acad. Sci. USA 110, 12810-12815 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 12810-12815
-
-
Hazen, T.H.1
-
19
-
-
67650569076
-
Characterisation of atypical enteropathogenic E. Coli strains of clinical origin
-
Tennant, S. M. et al. Characterisation of atypical enteropathogenic E. coli strains of clinical origin. BMC Microbiol. 9, 117 (2009).
-
(2009)
BMC Microbiol.
, vol.9
, pp. 117
-
-
Tennant, S.M.1
-
20
-
-
33846264492
-
Molecular evolution of typical enteropathogenic Escherichia coli: Clonal analysis by multilocus sequence typing and virulence gene allelic profiling
-
Lacher, D. W., Steinsland, H., Blank, T. E., Donnenberg, M. S. & Whittam, T. S. Molecular evolution of typical enteropathogenic Escherichia coli: clonal analysis by multilocus sequence typing and virulence gene allelic profiling. J. Bacteriol. 189, 342-350 (2007).
-
(2007)
J. Bacteriol.
, vol.189
, pp. 342-350
-
-
Lacher, D.W.1
Steinsland, H.2
Blank, T.E.3
Donnenberg, M.S.4
Whittam, T.S.5
-
21
-
-
53849104729
-
The pangenome structure of Escherichia coli: Comparative genomic analysis of E. Coli commensal and pathogenic isolates
-
Rasko, D. A. et al. The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J. Bacteriol. 190, 6881-6893 (2008).
-
(2008)
J. Bacteriol.
, vol.190
, pp. 6881-6893
-
-
Rasko, D.A.1
-
22
-
-
58149498183
-
Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69
-
Iguchi, A. et al. Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. J. Bacteriol. 191, 347-354 (2009).
-
(2009)
J. Bacteriol.
, vol.191
, pp. 347-354
-
-
Iguchi, A.1
-
23
-
-
84870036414
-
Diagnostic microbiologic methods in the GEMS-1 case/control study
-
Panchalingam, S. et al. Diagnostic microbiologic methods in the GEMS-1 case/control study. Clin. Infect. Dis. 55(Suppl 4), S294-S302 (2012).
-
(2012)
Clin. Infect. Dis.
, vol.55
, pp. S294-S302
-
-
Panchalingam, S.1
-
24
-
-
76949094947
-
The population genetics of commensal Escherichia coli
-
Tenaillon, O., Skurnik, D., Picard, B. & Denamur, E. The population genetics of commensal Escherichia coli. Nature Rev. Microbiol. 8, 207-217 (2010).
-
(2010)
Nature Rev. Microbiol.
, vol.8
, pp. 207-217
-
-
Tenaillon, O.1
Skurnik, D.2
Picard, B.3
Denamur, E.4
-
25
-
-
12144289554
-
Dissecting virulence: Systematic and functional analyses of a pathogenicity island
-
Deng, W. et al. Dissecting virulence: systematic and functional analyses of a pathogenicity island. Proc. Natl Acad. Sci. USA 101, 3597-3602 (2004).
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 3597-3602
-
-
Deng, W.1
-
26
-
-
0034444843
-
Molecular variation among type IV pilin (bfpA) genes from diverse enteropathogenic Escherichia coli strains
-
Blank, T. E., Zhong, H., Bell, A. L., Whittam, T. S. & Donnenberg, M. S. Molecular variation among type IV pilin (bfpA) genes from diverse enteropathogenic Escherichia coli strains. Infect. Immun. 68, 7028-7038 (2000).
-
(2000)
Infect. Immun.
, vol.68
, pp. 7028-7038
-
-
Blank, T.E.1
Zhong, H.2
Bell, A.L.3
Whittam, T.S.4
Donnenberg, M.S.5
-
27
-
-
13244252316
-
Visualization of comparative genomic analyses by BLAST score ratio
-
Rasko, D. A., Myers, G. S. & Ravel, J. Visualization of comparative genomic analyses by BLAST score ratio. BMC Bioinf. 6, 2 (2005).
-
(2005)
BMC Bioinf.
, vol.6
, pp. 2
-
-
Rasko, D.A.1
Myers, G.S.2
Ravel, J.3
-
28
-
-
84897949482
-
The large-scale blast score ratio (LS-BSR) pipeline: A method to rapidly compare genetic content between bacterial genomes
-
Sahl, J. W., Caporaso, J. G., Rasko, D. A. & Keim, P. The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes. PeerJ 2, e332 (2014).
-
(2014)
PeerJ
, vol.2
, pp. e332
-
-
Sahl, J.W.1
Caporaso, J.G.2
Rasko, D.A.3
Keim, P.4
-
29
-
-
84872876043
-
Evolution of a pathogen: A comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter
-
Sahl, J. W. et al. Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter. PLoS ONE 8, e54287 (2013).
-
(2013)
PLoS ONE
, vol.8
, pp. e54287
-
-
Sahl, J.W.1
-
30
-
-
59249089471
-
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
Touchon, M. et al. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet. 5, e1000344 (2009).
-
(2009)
PLoS Genet.
, vol.5
, pp. e1000344
-
-
Touchon, M.1
-
31
-
-
0032515976
-
Differential patterns of acquired virulence genes distinguish Salmonella strains
-
Conner, C. P., Heithoff, D. M., Julio, S. M., Sinsheimer, R. L. & Mahan, M. J. Differential patterns of acquired virulence genes distinguish Salmonella strains. Proc. Natl Acad. Sci. USA 95, 4641-4645 (1998).
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 4641-4645
-
-
Conner, C.P.1
Heithoff, D.M.2
Julio, S.M.3
Sinsheimer, R.L.4
Mahan, M.J.5
-
32
-
-
0032917462
-
Coordinate intracellular expression of Salmonella genes induced during infection
-
Heithoff, D. M. et al. Coordinate intracellular expression of Salmonella genes induced during infection. J. Bacteriol. 181, 799-807 (1999).
-
(1999)
J. Bacteriol.
, vol.181
, pp. 799-807
-
-
Heithoff, D.M.1
-
33
-
-
84936991234
-
RNA-Seq analysis of isolate-and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates
-
Hazen, T. H. et al. RNA-Seq analysis of isolate-and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates. Front. Microbiol. 6, 569 (2015).
-
(2015)
Front. Microbiol.
, vol.6
, pp. 569
-
-
Hazen, T.H.1
-
34
-
-
84930657235
-
Bacterial factors associated with lethal outcome of enteropathogenic Escherichia coli infection: Genomic case-control studies
-
Donnenberg, M. S. et al. Bacterial factors associated with lethal outcome of enteropathogenic Escherichia coli infection: genomic case-control studies. PLoS Negl. Trop. Dis. 9, e0003791 (2015).
-
(2015)
PLoS Negl. Trop. Dis.
, vol.9
, pp. e0003791
-
-
Donnenberg, M.S.1
-
35
-
-
79251525497
-
A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation
-
Sahl, J. W. et al. A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation. Infect. Immun. 79, 950-960 (2011).
-
(2011)
Infect. Immun.
, vol.79
, pp. 950-960
-
-
Sahl, J.W.1
-
36
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K. et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739 (2011).
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
-
37
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680 (1994).
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
38
-
-
0019296687
-
A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120 (1980).
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
39
-
-
77954199176
-
Ergatis: A web interface and scalable software system for bioinformatics workflows
-
Orvis, J. et al. Ergatis: a web interface and scalable software system for bioinformatics workflows. Bioinformatics 26, 1488-1492 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 1488-1492
-
-
Orvis, J.1
-
40
-
-
80053523629
-
The IGS standard operating procedure for automated prokaryotic annotation
-
Galens, K. et al. The IGS standard operating procedure for automated prokaryotic annotation. Stand. Genomic Sci. 4, 244-251 (2011).
-
(2011)
Stand. Genomic Sci.
, vol.4
, pp. 244-251
-
-
Galens, K.1
-
41
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M. B., Spellman, P. T., Brown, P. O. & Botstein, D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA 95, 14863-14868 (1998).
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
42
-
-
33747894577
-
TM4 microarray software suite
-
Saeed, A. I. et al. TM4 microarray software suite. Methods Enzymol. 411, 134-193 (2006).
-
(2006)
Methods Enzymol.
, vol.411
, pp. 134-193
-
-
Saeed, A.I.1
-
44
-
-
79551599525
-
Mugsy: Fast multiple alignment of closely related whole genomes
-
Angiuoli, S. V. & Salzberg, S. L. Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics 27, 334-342 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 334-342
-
-
Angiuoli, S.V.1
Salzberg, S.L.2
-
45
-
-
33750403801
-
RAxML-VI-HPC:maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. RAxML-VI-HPC:maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
|