-
1
-
-
0024398750
-
Circular RNAs: Relics of precellular evolution?
-
Diener, T. O. (1989) Circular RNAs: relics of precellular evolution? Proc. Natl. Acad. Sci. U. S. A., 86, 9370-9374.
-
(1989)
Proc. Natl. Acad. Sci. U. S. A.
, vol.86
, pp. 9370-9374
-
-
Diener, T.O.1
-
2
-
-
0025976493
-
Scrambled exons
-
Nigro, J. M., Cho, K. R., Fearon, E. R., Kern, S. E., Ruppert, J. M., Oliner, J. D., Kinzler, K. W. and Vogelstein, B. (1991) Scrambled exons. Cell, 64, 607-613.
-
(1991)
Cell
, vol.64
, pp. 607-613
-
-
Nigro, J.M.1
Cho, K.R.2
Fearon, E.R.3
Kern, S.E.4
Ruppert, J.M.5
Oliner, J.D.6
Kinzler, K.W.7
Vogelstein, B.8
-
3
-
-
0018731471
-
Viroids: Structure and function
-
Diener, T. O. (1979) Viroids: structure and function. Science, 205, 859-866.
-
(1979)
Science
, vol.205
, pp. 859-866
-
-
Diener, T.O.1
-
4
-
-
0017180370
-
Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures
-
Sanger, H. L., Klotz, G., Riesner, D., Gross, H. J. and Kleinschmidt, A. K. (1976) Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures. Proc. Natl. Acad. Sci. U. S. A., 73, 3852-3856.
-
(1976)
Proc. Natl. Acad. Sci. U. S. A.
, vol.73
, pp. 3852-3856
-
-
Sanger, H.L.1
Klotz, G.2
Riesner, D.3
Gross, H.J.4
Kleinschmidt, A.K.5
-
5
-
-
0027158771
-
Circular transcripts of the testis-determining gene Sry in adult-mouse testis
-
Capel, B., Swain, A., Nicolis, S., Hacker, A., Walter, M., Koopman, P., Goodfellow, P. and Lovellbadge, R. (1993) Circular transcripts of the testis-determining gene Sry in adult-mouse testis. Cell, 73, 1019-1030.
-
(1993)
Cell
, vol.73
, pp. 1019-1030
-
-
Capel, B.1
Swain, A.2
Nicolis, S.3
Hacker, A.4
Walter, M.5
Koopman, P.6
Goodfellow, P.7
Lovellbadge, R.8
-
6
-
-
0029944946
-
Exon circularization in mammalian nuclear extracts
-
Pasman, Z., Been, M. D. and Garcia-Blanco, M. A. (1996) Exon circularization in mammalian nuclear extracts. Rna, 2, 603-610.
-
(1996)
RNA
, vol.2
, pp. 603-610
-
-
Pasman, Z.1
Been, M.D.2
Garcia-Blanco, M.A.3
-
7
-
-
0029900081
-
Circular RNAs from transcripts of the rat cytochrome P450 2C24 gene: Correlation with exon skipping
-
Zaphiropoulos, P. G. (1996) Circular RNAs from transcripts of the rat cytochrome P450 2C24 gene: correlation with exon skipping. Proc. Natl. Acad. Sci. U. S. A., 93, 6536-6541.
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 6536-6541
-
-
Zaphiropoulos, P.G.1
-
8
-
-
7844246533
-
The mouse formin (Fmn) gene: Abundant circular RNA transcripts and gene-targeted deletion analysis
-
Chao, C. W., Chan, D. C., Kuo, A. and Leder, P. (1998) The mouse formin (Fmn) gene: abundant circular RNA transcripts and gene-targeted deletion analysis. Mol. Med., 4, 614-628.
-
(1998)
Mol. Med.
, vol.4
, pp. 614-628
-
-
Chao, C.W.1
Chan, D.C.2
Kuo, A.3
Leder, P.4
-
9
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang, Z., Gerstein, M. and Snyder, M. (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet., 10, 57-63.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
10
-
-
84863045982
-
Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types
-
Salzman, J., Gawad, C., Wang, P. L., Lacayo, N. and Brown, P. O. (2012) Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types. PLoS One, 7, e30733.
-
(2012)
PLoS One
, vol.7
, pp. e30733
-
-
Salzman, J.1
Gawad, C.2
Wang, P.L.3
Lacayo, N.4
Brown, P.O.5
-
11
-
-
84884687363
-
Cell-type specific features of circular RNA expression
-
Salzman, J., Chen, R. E., Olsen, M. N., Wang, P. L. and Brown, P. O. (2013) Cell-type specific features of circular RNA expression. PLoS Genet., 9, e1003777.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003777
-
-
Salzman, J.1
Chen, R.E.2
Olsen, M.N.3
Wang, P.L.4
Brown, P.O.5
-
12
-
-
84875369248
-
Circular RNAs are a large class of animal RNAs with regulatory potency
-
Memczak, S., Jens, M., Elefsinioti, A., Torti, F., Krueger, J., Rybak, A., Maier, L., Mackowiak, S. D., Gregersen, L. H., Munschauer, M. et al. (2013) Circular RNAs are a large class of animal RNAs with regulatory potency. Nature, 495, 333-338.
-
(2013)
Nature
, vol.495
, pp. 333-338
-
-
Memczak, S.1
Jens, M.2
Elefsinioti, A.3
Torti, F.4
Krueger, J.5
Rybak, A.6
Maier, L.7
Mackowiak, S.D.8
Gregersen, L.H.9
Munschauer, M.10
-
13
-
-
84872531655
-
Circular RNAs are abundant, conserved, and associated with ALU repeats
-
Jeck, W. R., Sorrentino, J. A., Wang, K., Slevin, M. K., Burd, C. E., Liu, J., Marzluff, W. F. and Sharpless, N. E. (2013) Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA, 19, 141-157.
-
(2013)
RNA
, vol.19
, pp. 141-157
-
-
Jeck, W.R.1
Sorrentino, J.A.2
Wang, K.3
Slevin, M.K.4
Burd, C.E.5
Liu, J.6
Marzluff, W.F.7
Sharpless, N.E.8
-
14
-
-
33646852092
-
Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing
-
Suzuki, H., Zuo, Y., Wang, J., Zhang, M. Q., Malhotra, A. and Mayeda, A. (2006) Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing. Nucleic Acids Res., 34, e63-e63.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. e63-e63
-
-
Suzuki, H.1
Zuo, Y.2
Wang, J.3
Zhang, M.Q.4
Malhotra, A.5
Mayeda, A.6
-
15
-
-
80455143733
-
MiRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA
-
Hansen, T. B., Wiklund, E. D., Bramsen, J. B., Villadsen, S. B., Statham, A. L., Clark, S. J. and Kjems, J. (2011) miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA. EMBO J., 30, 4414-4422.
-
(2011)
EMBO J.
, vol.30
, pp. 4414-4422
-
-
Hansen, T.B.1
Wiklund, E.D.2
Bramsen, J.B.3
Villadsen, S.B.4
Statham, A.L.5
Clark, S.J.6
Kjems, J.7
-
16
-
-
84875372911
-
Natural RNA circles function as efficient microRNA sponges
-
Hansen, T. B., Jensen, T. I., Clausen, B. H., Bramsen, J. B., Finsen, B., Damgaard, C. K. and Kjems, J. (2013) Natural RNA circles function as efficient microRNA sponges. Nature, 495, 384-388.
-
(2013)
Nature
, vol.495
, pp. 384-388
-
-
Hansen, T.B.1
Jensen, T.I.2
Clausen, B.H.3
Bramsen, J.B.4
Finsen, B.5
Damgaard, C.K.6
Kjems, J.7
-
17
-
-
84911476411
-
CircRNA biogenesis competes with pre-mRNA splicing
-
Ashwal-Fluss, R., Meyer, M., Pamudurti, N. R., Ivanov, A., Bartok, O., Hanan, M., Evantal, N., Memczak, S., Rajewsky, N. and Kadener, S. (2014) circRNA biogenesis competes with pre-mRNA splicing. Mol. Cell, 56, 55-66.
-
(2014)
Mol. Cell
, vol.56
, pp. 55-66
-
-
Ashwal-Fluss, R.1
Meyer, M.2
Pamudurti, N.R.3
Ivanov, A.4
Bartok, O.5
Hanan, M.6
Evantal, N.7
Memczak, S.8
Rajewsky, N.9
Kadener, S.10
-
18
-
-
84915820022
-
Genome-wide analysis of Drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation
-
Westholm, J. O., Miura, P., Olson, S., Shenker, S., Joseph, B., Sanfilippo, P., Celniker, S. E., Graveley, B. R. and Lai, E. C. (2014) Genome-wide analysis of Drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation. Cell Rep., 9, 1966-1980.
-
(2014)
Cell Rep.
, vol.9
, pp. 1966-1980
-
-
Westholm, J.O.1
Miura, P.2
Olson, S.3
Shenker, S.4
Joseph, B.5
Sanfilippo, P.6
Celniker, S.E.7
Graveley, B.R.8
Lai, E.C.9
-
19
-
-
84897568165
-
Circular RNA is expressed across the eukaryotic tree of life
-
Wang, P. L., Bao, Y., Yee, M.-C., Barrett, S. P., Hogan, G. J., Olsen, M. N., Dinneny, J. R., Brown, P. O. and Salzman, J. (2014) Circular RNA is expressed across the eukaryotic tree of life. PLoS One, 9, e90859.
-
(2014)
PLoS One
, vol.9
, pp. e90859
-
-
Wang, P.L.1
Bao, Y.2
Yee, M.-C.3
Barrett, S.P.4
Hogan, G.J.5
Olsen, M.N.6
Dinneny, J.R.7
Brown, P.O.8
Salzman, J.9
-
20
-
-
84937578024
-
CIRI: An efficient and unbiased algorithm for de novo circular RNA identification
-
Gao, Y., Wang, J. and Zhao, F. (2015) CIRI: an efficient and unbiased algorithm for de novo circular RNA identification. Genome Biol., 16, 4.
-
(2015)
Genome Biol.
, vol.16
, pp. 4
-
-
Gao, Y.1
Wang, J.2
Zhao, F.3
-
21
-
-
84937629100
-
Exon skipping is correlated with exon circularization
-
Kelly, S., Greenman, C., Cook, P. R. and Papantonis, A. (2015) Exon skipping is correlated with exon circularization. J. Mol. Biol., 427, 2414-2417.
-
(2015)
J. Mol. Biol.
, vol.427
, pp. 2414-2417
-
-
Kelly, S.1
Greenman, C.2
Cook, P.R.3
Papantonis, A.4
-
22
-
-
84923102600
-
Correlation of circular RNA abundance with proliferation-exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues
-
Bachmayr-Heyda, A., Reiner, A. T., Auer, K., Sukhbaatar, N., Aust, S., Bachleitner-Hofmann, T., Mesteri, I., Grunt, T. W., Zeillinger, R. and Pils, D. (2015) Correlation of circular RNA abundance with proliferation-exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues. Sci. Rep., 5, 8057.
-
(2015)
Sci. Rep.
, vol.5
, pp. 8057
-
-
Bachmayr-Heyda, A.1
Reiner, A.T.2
Auer, K.3
Sukhbaatar, N.4
Aust, S.5
Bachleitner-Hofmann, T.6
Mesteri, I.7
Grunt, T.W.8
Zeillinger, R.9
Pils, D.10
-
23
-
-
84907509527
-
Complementary sequence-mediated exon circularization
-
Zhang, X.-O., Wang, H.-B., Zhang, Y, Lu, X., Chen, L.-L. and Yang, L. (2014) Complementary sequence-mediated exon circularization. Cell, 159, 134-147.
-
(2014)
Cell
, vol.159
, pp. 134-147
-
-
Zhang, X.-O.1
Wang, H.-B.2
Zhang, Y.L.X.3
Chen, L.-L.4
Yang, L.5
-
24
-
-
84956906428
-
Expanded identification and characterization of mammalian circular RNAs
-
Guo, J. U., Agarwal, V., Guo, H. and Bartel, D. P. (2014) Expanded identification and characterization of mammalian circular RNAs. Genome Biol, 15, 409.
-
(2014)
Genome Biol
, vol.15
, pp. 409
-
-
Guo, J.U.1
Agarwal, V.2
Guo, H.3
Bartel, D.P.4
-
25
-
-
84937622543
-
High-throughput data integration of RNA-miRNA-circRNA reveals novel insights into mechanisms of benzo [a] pyrene-induced carcinogenicity
-
Caiment, F., Gaj, S., Claessen, S. and Kleinjans, J. (2015) High-throughput data integration of RNA-miRNA-circRNA reveals novel insights into mechanisms of benzo [a] pyrene-induced carcinogenicity. Nucleic Acids Res., 43, 2525-2534.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 2525-2534
-
-
Caiment, F.1
Gaj, S.2
Claessen, S.3
Kleinjans, J.4
-
26
-
-
84925773568
-
Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity
-
You, X., Vlatkovic, I., Babic, A., Will, T., Epstein, I., Tushev, G., Akbalik, G, Wang, M., Glock, C. and Quedenau, C (2015) Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity. Nat. Neurosci., 18, 603-610.
-
(2015)
Nat. Neurosci.
, vol.18
, pp. 603-610
-
-
You, X.1
Vlatkovic, I.2
Babic, A.3
Will, T.4
Epstein, I.5
Tushev, G.6
Akbalik, G.7
Wang, M.8
Glock, C.9
Quedenau, C.10
-
27
-
-
84939419124
-
Circular RNAs in the Mammalian brain are highly abundant, conserved, and dynamically expressed
-
Rybak-Wolf, A., Stottmeister, C, Glažar, P, Jens, M., Pino, N, Giusti, S., Hanan, M., Behm, M., Bartok, O. and Ashwal-Fluss, R. (2015) Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed. Mol Cell, 58, 870-885.
-
(2015)
Mol Cell
, vol.58
, pp. 870-885
-
-
Rybak-Wolf, A.1
Stottmeister, C.2
Glažar, P.3
Jens, M.4
Pino, N.5
Giusti, S.6
Hanan, M.7
Behm, M.8
Bartok, O.9
Ashwal-Fluss, R.10
-
28
-
-
84933041690
-
Statistically based spicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development
-
Szabo, L., Morey, R., Palpant, NJ., Wang, PL., Afari, N, Jiang, C, Parast, M. M., Murry, CE., Laurent, L. C and Salzman, J. (2015) Statistically based spicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development. Genome Biol., 16, 126-126.
-
(2015)
Genome Biol.
, vol.16
, pp. 126
-
-
Szabo, L.1
Morey, R.2
Palpant, N.J.3
Wang, P.L.4
Afari, N.5
Jiang, C.6
Parast, M.M.7
Murry, C.E.8
Laurent, L.C.9
Salzman, J.10
-
29
-
-
84920511291
-
The landscape of microRNA, Piwi-interacting RNA, and circular RNA in human saliva
-
Bahn, J. H., Zhang, Q., Li, F., Chan, T.-M., Lin, X., Kim, Y, Wong, D. T. and Xiao, X. (2015) The landscape of microRNA, Piwi-interacting RNA, and circular RNA in human saliva. Clin. Chem., 61, 221-230.
-
(2015)
Clin. Chem.
, vol.61
, pp. 221-230
-
-
Bahn, J.H.1
Zhang, Q.2
Li, F.3
Chan, T.-M.4
Lin, X.5
Kim, Y.6
Wong, D.T.7
Xiao, X.8
-
30
-
-
84938747588
-
Circular RNA is enriched and stable in exosomes: A promising biomarker for cancer diagnosis
-
Li, Y, Zheng, Q., Bao, C, Li, S., Guo, W., Zhao, J., Chen, D., Gu, J., He, X. and Huang, S. (2015) Circular RNA is enriched and stable in exosomes: a promising biomarker for cancer diagnosis. Cell Res., 25, 981-984.
-
(2015)
Cell Res.
, vol.25
, pp. 981-984
-
-
Li, Y.Z.Q.1
Bao, C.L.S.2
Guo, W.3
Zhao, J.4
Chen, D.5
Gu, J.6
He, X.7
Huang, S.8
-
31
-
-
84906251756
-
Circular RNAs are depleted of polymorphisms at microRNA binding sites
-
Thomas, L. F. and Sætrom, P (2014) Circular RNAs are depleted of polymorphisms at microRNA binding sites. Bioinformatics, 30, 2243-2246.
-
(2014)
Bioinformatics
, vol.30
, pp. 2243-2246
-
-
Thomas, L.F.1
Sætrom, P.2
-
32
-
-
84920917407
-
Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals
-
Ivanov, A., Memczak, S., Wyler, E., Torti, F., Porath, H. T., Orejuela, M. R., Piechotta, M., Levanon, E. Y, Landthaler, M. and Dieterich, C (2015) Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals. Cell Rep., 10, 170-177.
-
(2015)
Cell Rep.
, vol.10
, pp. 170-177
-
-
Ivanov, A.1
Memczak, S.2
Wyler, E.3
Torti, F.4
Porath, H.T.5
Orejuela, M.R.6
Piechotta, M.7
Levanon, E.Y.8
Landthaler, M.9
Dieterich, C.10
-
33
-
-
33644750115
-
MiRBase: MicroRNA sequences, targets and gene nomenclature
-
Griffiths-Jones, S., Grocock, R. J., Van Dongen, S., Bateman, A. and Enright, A. J. (2006) miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res., 34, D140-D144.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D140-D144
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
Van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
34
-
-
84891796290
-
MiRTarBase update 2014: An information resource for experimentally validated miRNA-target interactions
-
Hsu, S.-D., Tseng, Y.-T., Shrestha, S., Lin, Y.-L., Khaleel, A., Chou, C.-H., Chu, C.-F., Huang, H.-Y, Lin, C.-M. and Ho, S.-Y (2014) miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. Nucleic Acids Res., 42, D78-D85.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D78-D85
-
-
Hsu, S.-D.1
Tseng, Y.-T.2
Shrestha, S.3
Lin, Y.-L.4
Khaleel, A.5
Chou, C.-H.6
Chu, C.-F.7
Huang, H.-Y.8
Lin, C.-M.9
Ho, S.-Y.10
-
35
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel, D. P (2009) MicroRNAs: target recognition and regulatory functions. Cell, 136, 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
36
-
-
78651301328
-
The sequence read archive
-
Leinonen, R., Sugawara, H. and Shumway, M. (2010) The sequence read archive. Nucleic Acids Res., 39, D19-D21.
-
(2010)
Nucleic Acids Res.
, vol.39
, pp. D19-D21
-
-
Leinonen, R.1
Sugawara, H.2
Shumway, M.3
-
37
-
-
80054976678
-
The evolution of gene expression levels in mammalian organs
-
Brawand, D., Soumillon, M., Necsulea, A., Julien, P, Csardi, G, Harrigan, P, Weier, M., Liechti, A., Aximu-Petri, A. and Kircher, M. (2011) The evolution of gene expression levels in mammalian organs. Nature, 478, 343-348.
-
(2011)
Nature
, vol.478
, pp. 343-348
-
-
Brawand, D.1
Soumillon, M.2
Necsulea, A.3
Julien, P.4
Csardi, G.5
Harrigan, P.6
Weier, M.7
Liechti, A.8
Aximu-Petri, A.9
Kircher, M.10
-
38
-
-
84856458462
-
Next-generation sequencing identifies TGF-β1-associated gene expression profiles in renal epithelial cells reiterated in human diabetic nephropathy
-
Brennan, E. P, Morine, M. J., Walsh, D. W., Roxburgh, S. A., Lindenmeyer, M. T, Brazil, D. P, Gaora, P. O., Roche, H. M., Sadlier, D. M. and Cohen, CD. (2012) Next-generation sequencing identifies TGF-β1-associated gene expression profiles in renal epithelial cells reiterated in human diabetic nephropathy. Biochim. Biophys. Acta (BBA)-Mol Basis Dis., 1822, 589-599.
-
(2012)
Biochim. Biophys. Acta (BBA)-mol Basis Dis.
, vol.1822
, pp. 589-599
-
-
Brennan, E.P.1
Morine, M.J.2
Walsh, D.W.3
Roxburgh, S.A.4
Lindenmeyer, M.T.5
Brazil, D.P.6
Gaora, P.O.7
Roche, H.M.8
Sadlier, D.M.9
Cohen, C.D.10
-
39
-
-
84868010349
-
Revisiting global gene expression analysis
-
Loven, J., Orlando, D. A., Sigova, A. A., Lin, CY, Rahl, PB., Burge, CB., Levens, D. L., Lee, TI. and Young, R. A. (2012) Revisiting global gene expression analysis. Cell, 151, 476-482.
-
(2012)
Cell
, vol.151
, pp. 476-482
-
-
Loven, J.1
Orlando, D.A.2
Sigova, A.A.3
Lin, C.Y.R.P.B.4
Burge, C.B.5
Levens, D.L.6
Lee, T.I.7
Young, R.A.8
-
40
-
-
84876588265
-
Modulation of gene expression via overlapping binding sites exerted by ZNF143, Notch1 and THAP11
-
Ngondo-Mbongo, R. P, Myslinski, E., Aster, J. C and Carbon, P (2013) Modulation of gene expression via overlapping binding sites exerted by ZNF143, Notch1 and THAP11. Nucleic Acids Res, 41, 4000-4014.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 4000-4014
-
-
Ngondo-Mbongo, R.P.1
Myslinski, E.2
Aster, J.C.3
Carbon, P.4
-
41
-
-
77950460661
-
Understanding mechanisms underlying human gene expression variation with RNA sequencing
-
Pickrell, J. K., Marioni, J. C, Pai, A. A., Degner, J. F., Engelhardt, B. E., Nkadori, E., Veyrieras, J.-B., Stephens, M., Gilad, Y and Pritchard, J. K. (2010) Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature, 464, 768-772.
-
(2010)
Nature
, vol.464
, pp. 768-772
-
-
Pickrell, J.K.1
Marioni, J.C.P.A.A.2
Degner, J.F.3
Engelhardt, B.E.4
Nkadori, E.5
Veyrieras, J.-B.6
Stephens, M.7
Gilad, Y.8
Pritchard, J.K.9
-
42
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien, T., Johnson, R., Bussotti, G., Tanzer, A., Djebali, S., Tilgner, H., Guernec, G., Martin, D., Merkel, A. and Knowles, D. G. (2012) The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res., 22, 1775-1789.
-
(2012)
Genome Res.
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
-
43
-
-
84908128765
-
CircBase: A database for circular RNAs
-
Glažar, P., Papavasileiou, P. and Rajewsky, N. (2014) circBase: a database for circular RNAs. RNA, 20, 1666-1670.
-
(2014)
RNA
, vol.20
, pp. 1666-1670
-
-
Glažar, P.1
Papavasileiou, P.2
Rajewsky, N.3
-
44
-
-
84891771466
-
The UCSC genome browserdatabase: 2014 update
-
Karolchik, D., Barber, G. P., Casper, J., Clawson, H., Cline, M. S., Diekhans, M. et al. (2014) The UCSC Genome Browserdatabase: 2014 update. Nucleic Acids Res, 42, D764-D770.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D764-D770
-
-
Karolchik, D.1
Barber, G.P.2
Casper, J.3
Clawson, H.4
Cline, M.S.5
Diekhans, M.6
-
45
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C., Williams, B. A., Pertea, G., Mortazavi, A., Kwan, G., Van Baren, M. J., Salzberg, S. L., Wold, B. J. and Pachter, L. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol., 28, 511-515.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
46
-
-
80051941094
-
Identification of novel transcripts in annotated genomes using RNA-Seq
-
Roberts, A., Pimentel, H., Trapnell, C. and Pachter, L. (2011) Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics, 27, 2325-2329.
-
(2011)
Bioinformatics
, vol.27
, pp. 2325-2329
-
-
Roberts, A.1
Pimentel, H.2
Trapnell, C.3
Pachter, L.4
-
47
-
-
84871809302
-
STAR: Ultrafast universal RNA-seq aligner
-
Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M. and Gingeras, T. R. (2013) STAR: ultrafast universal RNA-seq aligner. Bioinformatics, 29, 15-21.
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
Jha, S.6
Batut, P.7
Chaisson, M.8
Gingeras, T.R.9
-
48
-
-
84900322651
-
Detecting and characterizing circular RNAs
-
Jeck, W. R. and Sharpless, N. E. (2014) Detecting and characterizing circular RNAs. Nat. Biotechnol., 32, 453-461.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 453-461
-
-
Jeck, W.R.1
Sharpless, N.E.2
-
49
-
-
78651307694
-
StarBase: A database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
-
Yang, J.-H., Li, J.-H., Shao, P., Zhou, H., Chen, Y.-Q. and Qu, L.-H. (2011) starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. Nucleic Acids Res., 39, D202-D209.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D202-D209
-
-
Yang, J.-H.1
Li, J.-H.2
Shao, P.3
Zhou, H.4
Chen, Y.-Q.5
Qu, L.-H.6
-
50
-
-
54049084380
-
A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transition
-
Bracken, C. P., Gregory, P. A., Kolesnikoff, N., Bert, A. G., Wang, J., Shannon, M. F. and Goodall, G. J. (2008) A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transition. Cancer Res., 68, 7846-7854.
-
(2008)
Cancer Res.
, vol.68
, pp. 7846-7854
-
-
Bracken, C.P.1
Gregory, P.A.2
Kolesnikoff, N.3
Bert, A.G.4
Wang, J.5
Shannon, M.F.6
Goodall, G.J.7
-
51
-
-
84902152865
-
ZEB1 sensitizes lung adenocarcinoma to metastasis suppression by PI3K antagonism
-
Yang, Y., Ahn, Y.-H., Chen, Y., Tan, X., Guo, L., Gibbons, D. L., Ungewiss, C., Peng, D. H., Liu, X. and Lin, S. H. (2014) ZEB1 sensitizes lung adenocarcinoma to metastasis suppression by PI3K antagonism. J. Clin. Invest, 124, 2696.
-
(2014)
J. Clin. Invest
, vol.124
, pp. 2696
-
-
Yang, Y.1
Ahn, Y.-H.2
Chen, Y.3
Tan, X.4
Guo, L.5
Gibbons, D.L.6
Ungewiss, C.7
Peng, D.H.8
Liu, X.9
Lin, S.H.10
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