-
1
-
-
78650747491
-
Discovery and characterization of chromatin states for systematic annotation of the human genome
-
Ernst, J., & Kellis, M. Discovery and characterization of chromatin states for systematic annotation of the human genome. Nat Biotechnol 28, 817-25 (2010
-
(2010)
Nat Biotechnol
, vol.28
, pp. 817-825
-
-
Ernst, J.1
Kellis, M.2
-
2
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
Ernst, J., et al. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 473, 43-9 (2011
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
-
3
-
-
84880064679
-
Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types
-
Ernst, J., & Kellis, M. Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types. Genome Res 23, 1142-54 (2013
-
(2013)
Genome Res
, vol.23
, pp. 1142-1154
-
-
Ernst, J.1
Kellis, M.2
-
4
-
-
84865739425
-
Architecture of the human regulatory network derived from ENCODE data
-
Gerstein, M. B., et al. Architecture of the human regulatory network derived from ENCODE data. Nature 489, 91-100 (2012
-
(2012)
Nature
, vol.489
, pp. 91-100
-
-
Gerstein, M.B.1
-
5
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen, T. S., et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448, 553-60 (2007
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
-
6
-
-
84921754876
-
Alterations in chromatin accessibility and DNA methylation in clear cell renal cell carcinoma
-
Buck, M. J., et al. Alterations in chromatin accessibility and DNA methylation in clear cell renal cell carcinoma. Oncogene 33, 4961-5 (2014
-
(2014)
Oncogene
, vol.33
, pp. 4961-4965
-
-
Buck, M.J.1
-
7
-
-
77950866717
-
Chromatin signature of embryonic pluripotency is established during genome activation
-
Vastenhouw, N. L., et al. Chromatin signature of embryonic pluripotency is established during genome activation. Nature 464, 922-6 (2010
-
(2010)
Nature
, vol.464
, pp. 922-926
-
-
Vastenhouw, N.L.1
-
8
-
-
43049085949
-
Differential H3K4 methylation identifies developmentally poised hematopoietic genes
-
Orford, K., et al. Differential H3K4 methylation identifies developmentally poised hematopoietic genes. Dev Cell 14, 798-809 (2008
-
(2008)
Dev Cell
, vol.14
, pp. 798-809
-
-
Orford, K.1
-
9
-
-
84860257802
-
Interplay between gene expression noise and regulatory network architecture
-
Chalancon, G., et al. Interplay between gene expression noise and regulatory network architecture. Trends Genet 28, 221-32 (2012
-
(2012)
Trends Genet
, vol.28
, pp. 221-232
-
-
Chalancon, G.1
-
10
-
-
84887422588
-
Analysis and correction of crosstalk effects in pathway analysis
-
Donato, M., et al. Analysis and correction of crosstalk effects in pathway analysis. Genome Res 23, 1885-93 (2013
-
(2013)
Genome Res
, vol.23
, pp. 1885-1893
-
-
Donato, M.1
-
11
-
-
34249815200
-
Identification of the JNK signaling pathway as a functional target of the tumor suppressor PTEN
-
Vivanco, I., et al. Identification of the JNK signaling pathway as a functional target of the tumor suppressor PTEN. Cancer Cell 11, 555-69 (2007
-
(2007)
Cancer Cell
, vol.11
, pp. 555-569
-
-
Vivanco, I.1
-
12
-
-
79955979289
-
Ptpn11/Shp2 acts as a tumor suppressor in hepatocellular carcinogenesis
-
Bard-Chapeau, E. A., et al. Ptpn11/Shp2 acts as a tumor suppressor in hepatocellular carcinogenesis. Cancer Cell 19, 629-39 (2011
-
(2011)
Cancer Cell
, vol.19
, pp. 629-639
-
-
Bard-Chapeau, E.A.1
-
13
-
-
79960030545
-
Indefinite self-renewal of ESCs through Myc/Max transcriptional complex-independent mechanisms
-
Hishida, T., et al. Indefinite self-renewal of ESCs through Myc/Max transcriptional complex-independent mechanisms. Cell Stem Cell 9, 37-49 (2011
-
(2011)
Cell Stem Cell
, vol.9
, pp. 37-49
-
-
Hishida, T.1
-
14
-
-
34249798732
-
Transcription factors: Molecular targets for prostate cancer intervention by phytochemicals
-
Kaur, M., & Agarwal, R. Transcription factors: molecular targets for prostate cancer intervention by phytochemicals. Curr Cancer Drug Targets 7, 355-67 (2007
-
(2007)
Curr Cancer Drug Targets
, vol.7
, pp. 355-367
-
-
Kaur, M.1
Agarwal, R.2
-
15
-
-
84976451504
-
Identification and biochemical characterization of HMP19, a tumor/metastasis suppressor in pancreatic cancer
-
Bohl, C., & Kurahara, H. Identification and biochemical characterization of HMP19, a tumor/metastasis suppressor in pancreatic cancer. Cancer Research 10, 1538-7445 (2014
-
(2014)
Cancer Research
, vol.10
, pp. 1538-7445
-
-
Bohl, C.1
Kurahara, H.2
-
16
-
-
79955929062
-
RAD21 cooperates with pluripotency transcription factors in the maintenance of embryonic stem cell identity
-
Nitzsche, A., et al. RAD21 cooperates with pluripotency transcription factors in the maintenance of embryonic stem cell identity. PLoS One 6, e19470 (2011
-
(2011)
PLoS One
, vol.6
, pp. e19470
-
-
Nitzsche, A.1
-
17
-
-
23744485559
-
Early B-cell factor ?pioneers? the way for B-cell development
-
Hagman, J., & Lukin, K. Early B-cell factor ?pioneers? the way for B-cell development. Trends Immunol 26, 455-61 (2005
-
(2005)
Trends Immunol
, vol.26
, pp. 455-461
-
-
Hagman, J.1
Lukin, K.2
-
18
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B. E., et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125, 315-26 (2006
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
-
19
-
-
73649097906
-
Delayed differentiation in embryonic stem cells and mesodermal progenitors in the absence of CtBP2
-
Tarleton, H. P., & Lemischka, I. R. Delayed differentiation in embryonic stem cells and mesodermal progenitors in the absence of CtBP2. Mech Dev 127, 107-19 (2010
-
(2010)
Mech Dev
, vol.127
, pp. 107-119
-
-
Tarleton, H.P.1
Lemischka, I.R.2
-
20
-
-
33645887244
-
Chromatin looping and the probability of transcription
-
Li, Q., Barkess, G., & Qian, H. Chromatin looping and the probability of transcription. Trends Genet 22, 197-202 (2006
-
(2006)
Trends Genet
, vol.22
, pp. 197-202
-
-
Li, Q.1
Barkess, G.2
Qian, H.3
-
21
-
-
26244431736
-
Gata4 regulates the formation of multiple organs
-
Holtzinger, A., & Evans, T. Gata4 regulates the formation of multiple organs. Development 132, 4005-14 (2005
-
(2005)
Development
, vol.132
, pp. 4005-4014
-
-
Holtzinger, A.1
Evans, T.2
-
22
-
-
84873702810
-
Dynamic chromatin remodeling mediated by polycomb proteins orchestrates pancreatic differentiation of human embryonic stem cells
-
Xie, R., et al. Dynamic chromatin remodeling mediated by polycomb proteins orchestrates pancreatic differentiation of human embryonic stem cells. Cell Stem Cell 12, 224-37 (2013
-
(2013)
Cell Stem Cell
, vol.12
, pp. 224-237
-
-
Xie, R.1
-
23
-
-
84861157792
-
Super-silac allows classification of diffuse large b-cell lymphoma subtypes by their protein expression profiles
-
Deeb, S. J., D'Souza, R. C., Cox, J., Schmidt-Supprian, M., & Mann, M. Super-SILAC allows classification of diffuse large B-cell lymphoma subtypes by their protein expression profiles. Mol Cell Proteomics 11, 77-89 (2012
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. 77-89
-
-
Deeb, S.J.1
D'Souza, R.C.2
Cox, J.3
Schmidt-Supprian, M.4
Mann, M.5
-
24
-
-
84886411605
-
Infiltrating CTLs are bothered by HLA-E on tumors
-
Gooden, M., & Hall, T. Infiltrating CTLs are bothered by HLA-E on tumors. Oncoimmunology 1, 92-93 (2012
-
(2012)
Oncoimmunology
, vol.1
, pp. 92-93
-
-
Gooden, M.1
Hall, T.2
-
25
-
-
50249175130
-
Loss of trimethylation at lysine 27 of histone H3 is a predictor of poor outcome in breast, ovarian, and pancreatic cancers
-
Wei, Y., et al. Loss of trimethylation at lysine 27 of histone H3 is a predictor of poor outcome in breast, ovarian, and pancreatic cancers. Mol Carcinog 47, 701-6 (2008
-
(2008)
Mol Carcinog
, vol.47
, pp. 701-706
-
-
Wei, Y.1
-
26
-
-
84941880176
-
Loss of ATF3 promotes Akt activation and prostate cancer development in a Pten knockout mouse model
-
Wang, Z., et al. Loss of ATF3 promotes Akt activation and prostate cancer development in a Pten knockout mouse model. Oncogene. doi: 10.1038/onc.2014.426 (2014
-
(2014)
Oncogene
-
-
Wang, Z.1
-
27
-
-
84920942368
-
SnapShot fanconi anemia and associated proteins
-
e1
-
Wang, A. T., & Smogorzewska, A. SnapShot: fanconi anemia and associated proteins. Cell 160, 354-354 e1 (2015
-
(2015)
Cell
, vol.160
, pp. 354
-
-
Wang, A.T.1
Smogorzewska, A.2
-
28
-
-
84927618199
-
A regimen combining the wee1 inhibitor azd1775 with hdac inhibitors targets human acute myeloid leukemia cells harboring various genetic mutations
-
Zhou, L., et al. A regimen combining the Wee1 inhibitor AZD1775 with HDAC inhibitors targets human acute myeloid leukemia cells harboring various genetic mutations. Leukemia. doi: 10.1038/leu.2014.296 (2014
-
(2014)
Leukemia
-
-
Zhou, L.1
-
29
-
-
84870478335
-
Prioritizing cancer-related key miRNA-Target interactions by integrative genomics
-
Xiao, Y., et al. Prioritizing cancer-related key miRNA-Target interactions by integrative genomics. Nucleic Acids Res 40, 7653-65 (2012
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 7653-7665
-
-
Xiao, Y.1
-
30
-
-
1542515338
-
A census of human cancer genes
-
Futreal, P. A., et al. A census of human cancer genes. Nat Rev Cancer 4, 177-83 (2004
-
(2004)
Nat Rev Cancer
, vol.4
, pp. 177-183
-
-
Futreal, P.A.1
-
31
-
-
78049345949
-
LAPTM4B: A novel cancer-Associated gene motivates multidrug resistance through efflux and activating PI3K/AKT signaling
-
Li, L., et al. LAPTM4B: a novel cancer-Associated gene motivates multidrug resistance through efflux and activating PI3K/AKT signaling. Oncogene 29, 5785-95 (2010
-
(2010)
Oncogene
, vol.29
, pp. 5785-5795
-
-
Li, L.1
-
32
-
-
76349095348
-
Amplification of LAPTM4B and YWHAZ contributes to chemotherapy resistance and recurrence of breast cancer
-
Li, Y., et al. Amplification of LAPTM4B and YWHAZ contributes to chemotherapy resistance and recurrence of breast cancer. Nat Med 16, 214-8 (2010
-
(2010)
Nat Med
, vol.16
, pp. 214-218
-
-
Li, Y.1
-
33
-
-
84876882782
-
Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types
-
Giacomini, C. P., et al. Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types. PLoS Genet 9, e1003464 (2013
-
(2013)
PLoS Genet
, vol.9
, pp. e1003464
-
-
Giacomini, C.P.1
-
34
-
-
84976436548
-
Characterization of long non-coding rnas in chronic lymphocytic leukemia: Evidence for association with disease progression in trisomy 12 patients
-
Tschumper, R. C., Shanafelt, T. D., Kay, N. E., & Jelinek, D. F. Characterization of Long Non-Coding RNAs in Chronic Lymphocytic Leukemia: Evidence for Association with Disease Progression in Trisomy 12 Patients. Blood 124, 3281-3281 (2014
-
(2014)
Blood
, vol.124
, pp. 3281
-
-
Tschumper, R.C.1
Shanafelt, T.D.2
Kay, N.E.3
Jelinek, D.F.4
-
35
-
-
77955034636
-
Integrative genomic analyses identify BRF2 as a novel lineage-specific oncogene in lung squamous cell carcinoma
-
Lockwood, W. W., et al. Integrative genomic analyses identify BRF2 as a novel lineage-specific oncogene in lung squamous cell carcinoma. PLoS medicine 7, e1000315 (2010
-
(2010)
PLoS Medicine
, vol.7
, pp. e1000315
-
-
Lockwood, W.W.1
-
36
-
-
46449084651
-
Eliminating epigenetic barriers induces transient hormoneregulated gene expression in estrogen receptor negative breast cancer cells
-
Fleury, L., Gerus, M., Lavigne, A., Richard-Foy, H., & Bystricky, K. Eliminating epigenetic barriers induces transient hormoneregulated gene expression in estrogen receptor negative breast cancer cells. Oncogene 27, 4075-4085 (2008
-
(2008)
Oncogene
, vol.27
, pp. 4075-4085
-
-
Fleury, L.1
Gerus, M.2
Lavigne, A.3
Richard-Foy, H.4
Bystricky, K.5
-
37
-
-
84908214931
-
Genetic methylation and lymphoid malignancies: Biomarkers of tumor progression and targeted therapy
-
Zhao, X., Zhang, W., Wang, L., & Zhao, W.-L. Genetic methylation and lymphoid malignancies: biomarkers of tumor progression and targeted therapy. Biomarker Res 1, 24 (2013
-
(2013)
Biomarker Res
, vol.1
, pp. 24
-
-
Zhao, X.1
Zhang, W.2
Wang, L.3
Zhao, W.-L.4
-
38
-
-
84881412394
-
Human endonuclease v is a ribonuclease specific for inosine-containing RNA
-
Morita, Y., et al. Human endonuclease V is a ribonuclease specific for inosine-containing RNA. Nat Commun 4, 2273 (2013
-
(2013)
Nat Commun
, vol.4
, pp. 2273
-
-
Morita, Y.1
-
39
-
-
18144425133
-
Use of DNA repair enzymes in electrochemical detection of damage to DNA bases in vitro and in cells
-
Cahova-Kucharikova, K., Fojta, M., Mozga, T., & Palecek, E. Use of DNA repair enzymes in electrochemical detection of damage to DNA bases in vitro and in cells. Anal Chem 77, 2920-7 (2005
-
(2005)
Anal Chem
, vol.77
, pp. 2920-2927
-
-
Cahova-Kucharikova, K.1
Fojta, M.2
Mozga, T.3
Palecek, E.4
-
40
-
-
1342322686
-
Multiple G-protein-coupled receptor signals converge on the epidermal growth factor receptor to promote migration and invasion
-
Schafer, B., Gschwind, A., & Ullrich, A. Multiple G-protein-coupled receptor signals converge on the epidermal growth factor receptor to promote migration and invasion. Oncogene 23, 991-9 (2004
-
(2004)
Oncogene
, vol.23
, pp. 991-999
-
-
Schafer, B.1
Gschwind, A.2
Ullrich, A.3
-
41
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2
-
Love, M. I., Huber, W., & Anders, S. Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2. Genome biology 15, 550 (2014
-
(2014)
Genome Biology
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
42
-
-
84875094092
-
CMyc/miR-125b-5p signalling determines sensitivity to bortezomib in preclinical model of cutaneous T-cell lymphomas
-
Manfe, V., et al. cMyc/miR-125b-5p signalling determines sensitivity to bortezomib in preclinical model of cutaneous T-cell lymphomas. PLoS One 8, e59390 (2013
-
(2013)
PLoS One
, vol.8
, pp. e59390
-
-
Manfe, V.1
-
43
-
-
72949113230
-
Emerging roles of ATF2 and the dynamic AP1 network in cancer
-
Lopez-Bergami, P., Lau, E., & Ronai, Z. Emerging roles of ATF2 and the dynamic AP1 network in cancer. Nat Rev Cancer 10, 65-76 (2010
-
(2010)
Nat Rev Cancer
, vol.10
, pp. 65-76
-
-
Lopez-Bergami, P.1
Lau, E.2
Ronai, Z.3
-
44
-
-
84879983245
-
Poised chromatin at the ZEB1 promoter enables breast cancer cell plasticity and enhances tumorigenicity
-
Chaffer, C.L., et al. Poised chromatin at the ZEB1 promoter enables breast cancer cell plasticity and enhances tumorigenicity. Cell 154, 61-74 (2013
-
(2013)
Cell
, vol.154
, pp. 61-74
-
-
Chaffer, C.L.1
-
45
-
-
84866361701
-
Circuitry and dynamics of human transcription factor regulatory networks
-
Neph, S., et al. Circuitry and dynamics of human transcription factor regulatory networks. Cell 150, 1274-86 (2012
-
(2012)
Cell
, vol.150
, pp. 1274-1286
-
-
Neph, S.1
-
46
-
-
84866456131
-
The architecture of the gene regulatory networks of different tissues
-
Li, J., Hua, X., Haubrock, M., Wang, J., & Wingender, E. The architecture of the gene regulatory networks of different tissues. Bioinformatics 28, i509-i514 (2012
-
(2012)
Bioinformatics
, vol.28
, pp. i509-i514
-
-
Li, J.1
Hua, X.2
Haubrock, M.3
Wang, J.4
Wingender, E.5
-
47
-
-
77958526499
-
Epigenetic regulation of the neural transcriptome: The meaning of the marks
-
Meaney, M. J., & Ferguson-Smith, A. C. Epigenetic regulation of the neural transcriptome: the meaning of the marks. Nat Neurosci 13, 1313-8 (2010
-
(2010)
Nat Neurosci
, vol.13
, pp. 1313-1318
-
-
Meaney, M.J.1
Ferguson-Smith, A.C.2
-
48
-
-
79952696158
-
A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets
-
Cheng, C., et al. A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets. Genome Biol 12, R15 (2011
-
(2011)
Genome Biol
, vol.12
, pp. R15
-
-
Cheng, C.1
-
49
-
-
84455200582
-
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
-
Ram, O., et al. Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells. Cell 147, 1628-39 (2011
-
(2011)
Cell
, vol.147
, pp. 1628-1639
-
-
Ram, O.1
-
50
-
-
55949124844
-
EZH1 mediates methylation on histone H3 lysine 27 and complements EZH2 in maintaining stem cell identity and executing pluripotency
-
Shen, X., et al. EZH1 mediates methylation on histone H3 lysine 27 and complements EZH2 in maintaining stem cell identity and executing pluripotency. Mol Cell 32, 491-502 (2008
-
(2008)
Mol Cell
, vol.32
, pp. 491-502
-
-
Shen, X.1
-
51
-
-
2942606066
-
Structure and evolution of transcriptional regulatory networks
-
Babu, M. M., Luscombe, N. M., Aravind, L., Gerstein, M., & Teichmann, S. A. Structure and evolution of transcriptional regulatory networks. Curr Opin Struct Biol 14, 283-91 (2004
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 283-291
-
-
Babu, M.M.1
Luscombe, N.M.2
Aravind, L.3
Gerstein, M.4
Teichmann, S.A.5
-
52
-
-
77449083293
-
Epigenetics and the environmental regulation of the genome and its function
-
C1-3
-
Zhang, T. Y., & Meaney, M. J. Epigenetics and the environmental regulation of the genome and its function. Annu Rev Psychol 1, 439-66 C1-3 (2010
-
(2010)
Annu Rev Psychol
, vol.1
, pp. 439-466
-
-
Zhang, T.Y.1
Meaney, M.J.2
-
53
-
-
78149330997
-
Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model
-
Larson, J. L., & Yuan, G. C. Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model. BMC Bioinformatics 11, 557 (2010
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 557
-
-
Larson, J.L.1
Yuan, G.C.2
-
54
-
-
84902302671
-
Transcription factor cooperativity in early adipogenic hotspots and super-enhancers
-
Siersbaek, R., et al. Transcription factor cooperativity in early adipogenic hotspots and super-enhancers. Cell Rep 7, 1443-55 (2014
-
(2014)
Cell Rep
, vol.7
, pp. 1443-1455
-
-
Siersbaek, R.1
-
55
-
-
84860783115
-
Integrative genomics identifies the corepressor smrt as a gatekeeper of adipogenesis through the transcription factors c/ebpbeta and kaiso
-
Raghav, S. K., et al. Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPbeta and KAISO. Mol Cell 46, 335-50 (2012
-
(2012)
Mol Cell
, vol.46
, pp. 335-350
-
-
Raghav, S.K.1
-
56
-
-
84894651254
-
Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH
-
Vierstra, J., Wang, H., John, S., Sandstrom, R., & Stamatoyannopoulos, J. A. Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH. Nat Methods 11, 66-72 (2014
-
(2014)
Nat Methods
, vol.11
, pp. 66-72
-
-
Vierstra, J.1
Wang, H.2
John, S.3
Sandstrom, R.4
Stamatoyannopoulos, J.A.5
-
57
-
-
84872269321
-
Nucleosome-driven transcription factor binding and gene regulation
-
Ballare, C., et al. Nucleosome-driven transcription factor binding and gene regulation. Mol Cell 49, 67-79 (2013
-
(2013)
Mol Cell
, vol.49
, pp. 67-79
-
-
Ballare, C.1
-
58
-
-
84871783406
-
T-bet and GATA3 orchestrate Th1 and Th2 differentiation through lineage-specific targeting of distal regulatory elements
-
Kanhere, A., et al. T-bet and GATA3 orchestrate Th1 and Th2 differentiation through lineage-specific targeting of distal regulatory elements. Nat Commun 3, 1268 (2012
-
(2012)
Nat Commun
, vol.3
, pp. 1268
-
-
Kanhere, A.1
-
59
-
-
79959911826
-
Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding
-
Biddie, S. C., et al. Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding. Mol Cell 43, 145-55 (2011
-
(2011)
Mol Cell
, vol.43
, pp. 145-155
-
-
Biddie, S.C.1
-
60
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen, Y., et al. A map of the cis-regulatory sequences in the mouse genome. Nature 488, 116-20 (2012
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
-
61
-
-
70350653808
-
Transcriptome analysis by strand-specific sequencing of complementary DNA
-
Parkhomchuk, D., et al. Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Res 37, e123 (2009
-
(2009)
Nucleic Acids Res
, vol.37
, pp. e123
-
-
Parkhomchuk, D.1
-
62
-
-
33646153295
-
FANMOD a tool for fast network motif detection
-
Wernicke, S., & Rasche, F. FANMOD: a tool for fast network motif detection. Bioinformatics 22, 1152-3 (2006
-
(2006)
Bioinformatics
, vol.22
, pp. 1152-1153
-
-
Wernicke, S.1
Rasche, F.2
-
63
-
-
0037174670
-
Network motifs: Simple building blocks of complex networks
-
Milo, R., et al. Network motifs: simple building blocks of complex networks. Science 298, 824-7 (2002
-
(2002)
Science
, vol.298
, pp. 824-827
-
-
Milo, R.1
-
64
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
Shen-Orr, S. S., Milo, R., Mangan, S., & Alon, U. Network motifs in the transcriptional regulation network of Escherichia coli. Nat Genet 31, 64-8 (2002
-
(2002)
Nat Genet
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
65
-
-
24144495559
-
MAVisto a tool for the exploration of network motifs
-
Schreiber, F., & Schwobbermeyer, H. MAVisto: a tool for the exploration of network motifs. Bioinformatics 21, 3572-4 (2005
-
(2005)
Bioinformatics
, vol.21
, pp. 3572-3574
-
-
Schreiber, F.1
Schwobbermeyer, H.2
-
66
-
-
67651039919
-
A network model of a cooperative genetic landscape in brain tumors
-
Bredel, M., et al. A network model of a cooperative genetic landscape in brain tumors. JAMA 302, 261-75 (2009
-
(2009)
JAMA
, vol.302
, pp. 261-275
-
-
Bredel, M.1
-
67
-
-
84893115719
-
Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation
-
Alvarez-Dominguez, J. R., et al. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Blood 123, 570-81 (2014
-
(2014)
Blood
, vol.123
, pp. 570-581
-
-
Alvarez-Dominguez, J.R.1
-
68
-
-
20144376345
-
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
-
Yanai, I., et al. Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics 21, 650-9 (2005
-
(2005)
Bioinformatics
, vol.21
, pp. 650-659
-
-
Yanai, I.1
-
69
-
-
80053374337
-
Proteomic and phosphoproteomic comparison of human ES and iPS cells
-
Phanstiel, D. H., et al. Proteomic and phosphoproteomic comparison of human ES and iPS cells. Nat Methods 8, 821-7 (2011
-
(2011)
Nat Methods
, vol.8
, pp. 821-827
-
-
Phanstiel, D.H.1
|