Strain-relief by single dislocation loops in calcite crystals grown on self-assembled monolayers

Nature Communications

Volumn 7, Issue , 2016, Pages

  Ihli, Johannes ^a   Clark, Jesse N ^b,c   Côté, Alexander S ^d   Kim, Yi Yeoun ^a   Schenk, Anna S ^a   Kulak, Alexander N ^a   Comyn, Timothy P ^a   Chammas, Oliver ^a   Harder, Ross J ^e   Duffy, Dorothy M ^d   Robinson, Ian K ^d   Meldrum, Fiona C ^a  

^a UNIVERSITY OF LEEDS   (United Kingdom)

^b SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^c DESY   (Germany)

^d UNIVERSITY COLLEGE LONDON   (United Kingdom)

^e ARGONNE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALCITE CRYSTAL; CALCIUM CARBONATE; SELF ASSEMBLED MONOLAYER; UNCLASSIFIED DRUG;

BIOMINERALIZATION; CRYSTAL STRUCTURE; DIFFRACTION; GEOMETRY; INORGANIC COMPOUND; ROUGHNESS;

ALGORITHM; ARTICLE; BIOMINERALIZATION; BRAGG COHERENT DIFFRACTION; CRYSTAL STRUCTURE; CRYSTALLIZATION; DIFFRACTION; DISLOCATION LOOP; FILM; GEOMETRY; ILLUMINATION; IMAGE RECONSTRUCTION; MISFIT DISLOCATION; STRESS; X RAY DIFFRACTION;

EID: 84975056647     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms11878     Document Type: Article

References (39)

1. Van der Merwe, J. H. Misfit dislocation generation in epitaxial layers. Crit. Rev. Solid State Mater. Sci. 17, 187-209 (1991).
2. Shiraki, Y. & Sakai, A. Fabrication technology of SiGe hetero-structures and their properties. Surf. Sci. Rep. 59, 153-207 (2005).
3. O'Reilly, E. P. Valence band engineering in strained-layer structures. Semicond. Sci. Technol. 4, 121-137 (1989).
4. Oh, S. H. & Park, C. G. Misfit strain relaxation by dislocations in SrRuO3/SrTiO3 (001) heteroepitaxy. J. Appl. Phys. 95, 4691-4704 (2004).
5. Jain, S. C., Harker, A. H. & Cowley, R. A. Misfit strain and misfit dislocations in lattice mismatched epitaxial layers and other systems. Phil. Mag. A 75, 1461-1515 (1997).
6. Hull, R. & Bean, J. C. Misfit dislocations in lattice-mismatched epitaxial films. Crit. Rev. Solid State Mater. Sci. 17, 507-546 (1992).
7. Chen, Y. & Washburn, J. Structural transition in large-lattice-mismatch heteroepitaxy. Phys. Rev. Letts. 77, 4046-4049 (1996).
8. Clark, J. N. et al. Three-dimensional imaging of dislocation propagation during crystal growth and dissolution. Nat. Mater. 14, 780-784 (2015).
9. Heywood, B. R. & Mann, S. Template-directed nuclatiosn and growth of inorganic materials. Adv. Mater. 6, 9-20 (1994).
10. Berman, A. et al. Total alignment of calcite at acidic polydiacetylene films: cooperativity at the organic-inorganic interface. Science 269, 515-518 (1995).
11. DiMasi, E. et al. Complementary control by additives of the kinetics of amorphous CaCO3 mineralization at an organic interface: in-situ synchrotron X-ray observations. Phys. Rev. Letts. 97, 045503 (2006).
12. Lee, J. R. I. et al. Structural development of mercaptophenol self-assembled monolayers and the overlying mineral phase during templated CaCO3 crystallization from a transient amorphous film. J. Am. Chem. Soc. 129, 10370-10381 (2007).
13. Aizenberg, J., Black, A. J. & Whitesides, G. M. Control of crystal nucleation by patterned self-assembled monolayers. Nature 398, 495-498 (1999).
14. Travaille, A. M. et al. Highly oriented self-assembled monolayers as templates for epitaxial calcite growth. J. Am. Chem. Soc. 125, 11571-11577 (2003).
15. Darkins, R., Côté, A. S., Freeman, C. L. & Duffy, D. M. Crystallization rates of calcite from an amorphous precursor in confinement. J. Cryst. Growth 367, 110-114 (2013).
16. Nielsen, M. H. & Lee, J. R. I inMethods in Enzymology Vol. 532 (ed. De Yoreo, J. J.) 209-224 (Academic Press, 2013).
17. Travaille, A. M. et al. Aligned growth of calcite crystals on a self-assembled monolayer. Adv. Mater. 14, 492-495 (2002).
18. Aizenberg, J., Black, A. J. & Whitesides, G. M. Oriented growth of calcite controlled by self-assembled monolayers of functionalized alkanethiols supported on gold and silver. J. Am. Chem. Soc. 121, 4500-4509 (1999).
19. Ahn, D. J., Berman, A. & Charych, D. Probing the dynamics of templatedirected calcite crystallization with in situ FTIR. J. Phys. Chem. 100, 12455-12461 (1996).
20. Lee, J. R. I. et al. Cooperative reorganization of mineral and template during directed nucleation of calcium carbonate. J. Phys. Chem. C 117, 11076-11085 (2013).
21. Quigley, D., Rodger, P. M., Freeman, C. L., Harding, J. H. & Duffy, D. M. Metadynamics simulations of calcite crystallization on self-assembled monolayers. J. Chem. Phys. 131, 094703 (2009).
22. Volkmer, D., Fricke, M., Vollhardt, D. & Siegel, S. Crystallization of (012) oriented calcite single crystals underneath monolayers of tetra(carboxymethoxy)calix 4 arenes. Dalton. Trans. 24, 4547-4554 (2002).
23. Freeman, C. L., Harding, J. H. & Duffy, D. M. Simulations of calcite crystallization on self-assembled monolayers. Langmuir 24, 9607-9615 (2008).
24. Pokroy, B. & Aizenberg, J. Calcite shape modulation through the lattice mismatch between the self-assembled monolayer template and the nucleated crystal face. CrystEngComm. 9, 1219-1225 (2007).
25. Harding, J. H., Freeman, C. L. & Duffy, D. M. Oriented crystal growth on organic monolayers. CrystEngComm. 16, 1430-1438 (2014).
26. Ihli, J., Bots, P., Kulak, A., Benning, L. G. & Meldrum, F. C. Elucidating mechanisms of diffusion-based calcium carbonate synthesis leads to controlled mesocrystal formation. Adv. Funct. Mater. 23, 1965-1973 (2013).
27. Stephens, C. J., Kim, Y.-Y., Evans, S. D., Meldrum, F. C. & Christenson, H. K. Early Stages of crystallization of calcium carbonate revealed in picoliter droplets. J. Am. Chem. Soc. 133, 5210-5213 (2011).
28. Zucker, R., Chatain, D., Dahmen, U., Hagège, S. & Carter, W. C. New software tools for the calculation and display of isolated and attached interfacial-energy minimizing particle shapes. J. Mater. Sci. 47, 8290-8302 (2012).
29. Fienup, J. R. Phase retrieval algorithms: A comparison. Appl. Opt. 21, 2758-2769 (1982).
30. Clark, J. N. et al. Ultrafast three-dimensional imaging of lattice dynamics in individual gold nanocrystals. Science 341, 56-59 (2013).
31. Chen, C.-C., Miao, J., Wang, C. W. & Lee, T. K. Application of optimization technique to noncrystalline x-ray diffraction microscopy: guided hybrid inputoutput method. Phys. Rev. B 76, 064113 (2007).
32. McCallum, B. C. & Bates, R. H. T. Towards a strategy for automatic phase retrieval from noisy fourier intensities. J. Mod. Opt. 36, 619-648 (1989).
33. Borukhin, S. & Pokroy, B. Formation and elimination of surface nanodefects on ultraflat metal surfaces produced by template stripping. Langmuir 27, 13415-13419 (2011).
34. Côté, A. S., Darkins, R. & Duffy, D. M. Modeling calcite crystallization on self-assembled carboxylate-terminated alkanethiols. J. Phys. Chem. C 118, 19188-19193 (2014).
35. DeBresser, J. H. P. & Spiers, C. J. Strength characteristics of the r, f, and c slip systems in calcite. Tectonophysics 272, 1-23 (1997).
36. Darkins, R., Sushko, M. L., Liu, J. & Duffy, D. M. Stress in titania nanoparticles: An atomistic study. Phys. Chem. Chem. Phys. 16, 9441-9447 (2014).
37. Hashmi, S. M., Wickman, H. H. & Weitz, D. A. Tetrahedral calcite crystals facilitate self-assembly at the air-water interface. Phys. Rev. E 72, 041605 (2005).
38. Loste, E., Dáz-Mart, E., Zarbakhsh, A. & Meldrum, F. C. Study of calcium carbonate precipitation under a series of fatty acid langmuir monolayers using brewster angle microscopy. Langmuir 19, 2830-2837 (2003).
39. Ihli, J. et al. Dataset for BCDI study of Calcite Crystals Grown on Self-Assembled Monolayers, Research Data Leeds Repository. Available at http://doi. org/10. 5518/53.