-
1
-
-
84863190624
-
Grinder: A versatile amplicon, and shotgun sequence simulator
-
Angly, F.E., Willner, D., Rohwer, F., et al. (2012). Grinder: A versatile amplicon, and shotgun sequence simulator. Nucleic Acids Res. 40, e94-e94
-
(2012)
Nucleic Acids Res
, vol.40
, pp. e94-e94
-
-
Angly, F.E.1
Willner, D.2
Rohwer, F.3
-
2
-
-
79961160227
-
High-resolution description of antibody heavy-chain repertoires in humans
-
Arnaout, R., Lee, W., Cahill, P., et al. (2011). High-resolution description of antibody heavy-chain repertoires in humans. PLoS One 6, e22365
-
(2011)
PLoS One
, vol.6
, pp. e22365
-
-
Arnaout, R.1
Lee, W.2
Cahill, P.3
-
3
-
-
0021114721
-
Synthesis of compositionally unique DNA by terminal deoxynucleotidyl transferase
-
Basu, M., Hegde, M.V., and Modak, M.J. (1983). Synthesis of compositionally unique DNA by terminal deoxynucleotidyl transferase. Biochem Biophys Res Commun 111, 1105-1112
-
(1983)
Biochem Biophys Res Commun
, vol.111
, pp. 1105-1112
-
-
Basu, M.1
Hegde, M.V.2
Modak, M.J.3
-
4
-
-
48449094247
-
IMGT/V-QUEST: The highly customized, and integrated system for IG, and TR standardized VJ, and VDJ sequence analysis
-
Brochet, X., Lefranc, M., and Giudicelli, V. (2008). IMGT/V-QUEST: The highly customized, and integrated system for IG, and TR standardized VJ, and VDJ sequence analysis. Nucleic Acids Res. 36, W503-W508
-
(2008)
Nucleic Acids Res
, vol.36
, pp. W503-W508
-
-
Brochet, X.1
Lefranc, M.2
Giudicelli, V.3
-
5
-
-
84926309183
-
Identification of cross-reactive IgG antibodies from an acute HIV-1-infected patient using phage display, and high-Throughput sequencing technologies
-
Chen, W., Prabakaran, P., Zhu, Z., et al. (2012). Identification of cross-reactive IgG antibodies from an acute HIV-1-infected patient using phage display, and high-Throughput sequencing technologies. Exp. Mol. Pathol. 93
-
(2012)
Exp. Mol. Pathol
, vol.93
-
-
Chen, W.1
Prabakaran, P.2
Zhu, Z.3
-
6
-
-
33745323376
-
Trends in antibody sequence changes during the somatic hypermutation process
-
Clark, L.A., Ganesan, S., Papp, S., and van Vlijmen, H.W. (2006). Trends in antibody sequence changes during the somatic hypermutation process. J. Immunol. 177, 333-340
-
(2006)
J. Immunol
, vol.177
, pp. 333-340
-
-
Clark, L.A.1
Ganesan, S.2
Papp, S.3
Van Vlijmen, H.W.4
-
7
-
-
80755159050
-
How to apply de Bruijn graphs to genome assembly
-
Compeau, P.E., Pevzner, P.A., and Tesler, G. (2011). How to apply de Bruijn graphs to genome assembly. Nat. Biotechnol. 29, 987-991
-
(2011)
Nat. Biotechnol
, vol.29
, pp. 987-991
-
-
Compeau, P.E.1
Pevzner, P.A.2
Tesler, G.3
-
8
-
-
0021216208
-
Insertion of N regions into heavy-chain genes is correlated with expression of terminal deoxytransferase in B cells
-
Desiderio, S.V., Yancopoulos, G.D., Paskind, M., et al. (1984). Insertion of N regions into heavy-chain genes is correlated with expression of terminal deoxytransferase in B cells. Nature 311, 752-755
-
(1984)
Nature
, vol.311
, pp. 752-755
-
-
Desiderio, S.V.1
Yancopoulos, G.D.2
Paskind, M.3
-
9
-
-
0031688707
-
Somatic hypermutation of human immunoglobulin heavy chain genes: Targeting of RGYW motifs on both DNA strands
-
Dörner, T., Foster, S.J., Farner, N.L., and Lipsky, P.E. (1998). Somatic hypermutation of human immunoglobulin heavy chain genes: Targeting of RGYW motifs on both DNA strands. Eur. J. Immunol. 28, 3384-3396
-
(1998)
Eur. J. Immunol
, vol.28
, pp. 3384-3396
-
-
Dörner, T.1
Foster, S.J.2
Farner, N.L.3
Lipsky, P.E.4
-
10
-
-
84945923591
-
A method for comparing two hierarchical clusterings
-
Fowlkes, E.B., and Mallows, C.L. (1983). A method for comparing two hierarchical clusterings. J. Am. Stat. Assoc. 78, 553-569
-
(1983)
J. Am. Stat. Assoc
, vol.78
, pp. 553-569
-
-
Fowlkes, E.B.1
Mallows, C.L.2
-
11
-
-
34547840205
-
IHMMune-Align: Hidden Markov model-based alignment, and identification of germline genes in rearranged immunoglobulin gene sequences
-
Gaéta, B.A., Malming, H.R., Jackson, K.J., et al. (2007). iHMMune-Align: Hidden Markov model-based alignment, and identification of germline genes in rearranged immunoglobulin gene sequences. Bioinformatics 23, 1580-1587
-
(2007)
Bioinformatics
, vol.23
, pp. 1580-1587
-
-
Gaéta, B.A.1
Malming, H.R.2
Jackson, K.J.3
-
12
-
-
84901649814
-
Immunoglobulin somatic hypermutation by apobec3/rfv3 during retroviral infection
-
Halemano, K., Guo, K., Heilman, K.J., et al. (2014). Immunoglobulin somatic hypermutation by apobec3/rfv3 during retroviral infection. Proc. Natl. Acad. Sci. USA 111, 7759-7764
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 7759-7764
-
-
Halemano, K.1
Guo, K.2
Heilman, K.J.3
-
13
-
-
84856246802
-
De novo assembly, and genotyping of variants using colored de Bruijn graphs
-
Iqbal, Z., Caccamo, M., Turner, I., et al. (2012). De novo assembly, and genotyping of variants using colored de Bruijn graphs. Nat. Genet. 44, 226-232
-
(2012)
Nat. Genet
, vol.44
, pp. 226-232
-
-
Iqbal, Z.1
Caccamo, M.2
Turner, I.3
-
14
-
-
0000210258
-
Nouvelles recherches sur la distribution orale
-
Jaccard, P. (1908). Nouvelles recherches sur la distribution orale. Bull. Soc. Vaudoise Sci. Nat. 44, 223-370
-
(1908)
Bull. Soc. Vaudoise Sci. Nat
, vol.44
, pp. 223-370
-
-
Jaccard, P.1
-
15
-
-
79951763951
-
Benchmarking the performance of human antibody gene alignment utilities using a 454 sequence dataset
-
Jackson, K.J., Boyd, S., Gaéta, B.A., and Collins, A.M. (2010). Benchmarking the performance of human antibody gene alignment utilities using a 454 sequence dataset. Bioinformatics 26, 3129-3130
-
(2010)
Bioinformatics
, vol.26
, pp. 3129-3130
-
-
Jackson, K.J.1
Boyd, S.2
Gaéta, B.A.3
Collins, A.M.4
-
16
-
-
26444485703
-
Exonuclease activity, and P nucleotide addition in the generation of the expressed immunoglobulin repertoire
-
Jackson, K.J., Gaeta, B., Sewell, W., and Collins, A.M. (2004). Exonuclease activity, and P nucleotide addition in the generation of the expressed immunoglobulin repertoire. BMC Immunol. 5, 19
-
(2004)
BMC Immunol
, vol.5
, pp. 19
-
-
Jackson, K.J.1
Gaeta, B.2
Sewell, W.3
Collins, A.M.4
-
17
-
-
84874092680
-
Lineage structure of the human antibody repertoire in response to inuenza vaccination
-
171ra19
-
Jiang, N., He, J., Weinstein, J.A., et al. (2013). Lineage structure of the human antibody repertoire in response to inuenza vaccination. Sci. Transl. Med. 5, 171ra19
-
(2013)
Sci. Transl. Med
, vol.5
-
-
Jiang, N.1
He, J.2
Weinstein, J.A.3
-
18
-
-
79955109675
-
Determinism, and stochasticity during maturation of the zebrafish antibody repertoire
-
Jiang, N., Weinstein, J., Penland, L., et al. (2011). Determinism, and stochasticity during maturation of the zebrafish antibody repertoire. Proc. Natl. Acad. Sci. USA 108, 5348-5353
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 5348-5353
-
-
Jiang, N.1
Weinstein, J.2
Penland, L.3
-
19
-
-
33748744694
-
No evidence for the use of DIR, D-D fusions, chromosome 15 open reading frames or VH replacement in the peripheral repertoire was found on application of an improved algorithm, JointML, to 6329 human immunoglobulin H rearrangements
-
Ohm-Laursen, L., Nielsen, M., Larsen, S.R., and Barington, T. (2006). No evidence for the use of DIR, D-D fusions, chromosome 15 open reading frames or VH replacement in the peripheral repertoire was found on application of an improved algorithm, JointML, to 6329 human immunoglobulin H rearrangements. Immunology 119, 265-277
-
(2006)
Immunology
, vol.119
, pp. 265-277
-
-
Ohm-Laursen, L.1
Nielsen, M.2
Larsen, S.R.3
Barington, T.4
-
20
-
-
4644275238
-
De novo repeat classification, and fragment assembly
-
Pevzner, P.A., Tang, H., and Tesler, G. (2004). De novo repeat classification, and fragment assembly. Genome Res. 14, 1786-1796
-
(2004)
Genome Res
, vol.14
, pp. 1786-1796
-
-
Pevzner, P.A.1
Tang, H.2
Tesler, G.3
-
21
-
-
84873593975
-
The imgt/HLA database
-
Robinson, J., Halliwell, J.A., McWilliam, H., et al. (2013). The IMGT/HLA database. Nucleic Acids Res. 41, D1222-D1227
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D1222-D1227
-
-
Robinson, J.1
Halliwell, J.A.2
McWilliam, H.3
-
22
-
-
0026443954
-
Somatic hypermutagenesis in immunoglobulin genes: II Infuence of neighbouring base sequences on mutagenesis
-
Rogozin, I.B., and Kolchanov, N.A. (1992). Somatic hypermutagenesis in immunoglobulin genes: II. Infuence of neighbouring base sequences on mutagenesis. Biochim. Biophys. Acta 1171, 11-18
-
(1992)
Biochim. Biophys. Acta
, vol.1171
, pp. 11-18
-
-
Rogozin, I.B.1
Kolchanov, N.A.2
-
23
-
-
84931099165
-
IgRepertoireConstructor: A novel algorithm for antibody repertoire construction, and immunoproteogenomics analysis
-
Safonova, Y., Bonissone, S., Kurpilyansky, E., et al. (2015). IgRepertoireConstructor: A novel algorithm for antibody repertoire construction, and immunoproteogenomics analysis. Bioinformatics 31, i53-i61
-
(2015)
Bioinformatics
, vol.31
, pp. i53-i61
-
-
Safonova, Y.1
Bonissone, S.2
Kurpilyansky, E.3
-
24
-
-
2442717677
-
Characterization of the human Ig heavy chain antigen binding complementarity determining region 3 using a newly developed software algorithm, JOINSOLVER
-
Souto-Carneiro, M.M., Longo, N.S., Russ, D.E., et al. (2004). Characterization of the human Ig heavy chain antigen binding complementarity determining region 3 using a newly developed software algorithm, JOINSOLVER. J. Immunol. 172, 6790-6802
-
(2004)
J. Immunol
, vol.172
, pp. 6790-6802
-
-
Souto-Carneiro, M.M.1
Longo, N.S.2
Russ, D.E.3
-
25
-
-
32544437698
-
SoDA: Implementation of a 3D alignment algorithm for inference of antigen receptor recombinations
-
Volpe, J.M., Cowell, L.G., and Kepler, T.B. (2006). SoDA: Implementation of a 3D alignment algorithm for inference of antigen receptor recombinations. Bioinformatics 22, 438-444
-
(2006)
Bioinformatics
, vol.22
, pp. 438-444
-
-
Volpe, J.M.1
Cowell, L.G.2
Kepler, T.B.3
-
26
-
-
57649176319
-
Ab-origin: An enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies
-
Wang, X., Wu, D., Zheng, S., et al. (2008). Ab-origin: An enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies. BMC Bioinform. 9, S20
-
(2008)
BMC Bioinform
, vol.9
, pp. S20
-
-
Wang, X.1
Wu, D.2
Zheng, S.3
-
27
-
-
65649122270
-
High-Throughput sequencing of the zebrafish antibody repertoire
-
Weinstein, J., Jiang, N., White, R., et al. (2009). High-Throughput sequencing of the zebrafish antibody repertoire. Science 324, 807-810
-
(2009)
Science
, vol.324
, pp. 807-810
-
-
Weinstein, J.1
Jiang, N.2
White, R.3
-
28
-
-
84874223925
-
Molecular deconvolution of the monoclonal antibodies that comprise the polyclonal serum response
-
Wine, Y., Boutz, D.R., Lavinder, J.J., et al. (2013). Molecular deconvolution of the monoclonal antibodies that comprise the polyclonal serum response. Proc. Natl. Acad. Sci. USA 110, 2993-2998
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 2993-2998
-
-
Wine, Y.1
Boutz, D.R.2
Lavinder, J.J.3
-
29
-
-
84883563447
-
IgBLAST: An immunoglobulin variable domain sequence analysis tool
-
Ye, J., Ma, N., Madden, T.L., and Ostell, J.M. (2013). IgBLAST: An immunoglobulin variable domain sequence analysis tool. Nucleic Acids Res 41, W34-W40
-
(2013)
Nucleic Acids Res
, vol.41
, pp. W34-W40
-
-
Ye, J.1
Ma, N.2
Madden, T.L.3
Ostell, J.M.4
-
30
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D.R., and Birney, E. (2008). Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
|