메뉴 건너뛰기




Volumn 7, Issue MAY, 2016, Pages

Type II toxin-antitoxin distribution and adaptive aspects on Xanthomonas genomes: Focus on Xanthomonas citri

Author keywords

Anti addiction model; Citrus canker; Death factor; EDF; Gene loss

Indexed keywords

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL PHENOMENA AND FUNCTIONS; BACTERIAL STRAIN; BIOINFORMATICS; GENE DELETION; GENE LOSS; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC REGULATION; MUTATION; NONHUMAN; PHYLOGENETIC TREE; PLANT DISEASE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SEQUENCE ANALYSIS; TOXIN ANTITOXIN SYSTEM; XANTHOMONAS CITRI;

EID: 84973579931     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2016.00652     Document Type: Article
Times cited : (24)

References (66)
  • 1
    • 84927593954 scopus 로고    scopus 로고
    • Die for the community: an overview of programmed cell death in bacteria
    • Allocati, N., Masulli, M., Di Ilio, C., and De Laurenzi, V. (2015). Die for the community: an overview of programmed cell death in bacteria. Cell Death Dis. 6:e1609. doi: 10.1038/cddis.2014.570
    • (2015) Cell Death Dis , vol.6
    • Allocati, N.1    Masulli, M.2    Di Ilio, C.3    De Laurenzi, V.4
  • 2
    • 1542472730 scopus 로고    scopus 로고
    • New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system
    • Anantharaman, V., and Aravind, L. (2003). New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system. Genome Biol. 4:R81. doi: 10.1186/gb-2003-4-12-r81
    • (2003) Genome Biol , vol.4
    • Anantharaman, V.1    Aravind, L.2
  • 3
    • 1942533451 scopus 로고    scopus 로고
    • Distant structural homology leads to the functional characterization of an Archaeal PIN domain as an exonuclease
    • Arcus, V. L., Bäckbro, K., Roos, A., Daniel, E. L., and Baker, E. N. (2004). Distant structural homology leads to the functional characterization of an Archaeal PIN domain as an exonuclease. J. Biol. Chem. 279, 16471-16478. doi: 10.1074/jbc.M313833200
    • (2004) J. Biol. Chem , vol.279 , pp. 16471-16478
    • Arcus, V.L.1    Bäckbro, K.2    Roos, A.3    Daniel, E.L.4    Baker, E.N.5
  • 4
    • 84920522058 scopus 로고    scopus 로고
    • Bridging the gap between viable but non-culturable and antibiotic persistent bacteria
    • Ayrapetyan, M., Williams, T. C., and Oliver, J. D. (2015). Bridging the gap between viable but non-culturable and antibiotic persistent bacteria. Trends Microbiol. 23, 7-13. doi: 10.1016/j.tim.2014.09.004
    • (2015) Trends Microbiol , vol.23 , pp. 7-13
    • Ayrapetyan, M.1    Williams, T.C.2    Oliver, J.D.3
  • 5
    • 0033574421 scopus 로고    scopus 로고
    • Interactions of CcdB with DNA gyrase. inactivation of Gyra, poisoning of the gyrase-DNA complex, and the antidote action of CcdA
    • Bahassi, E. M., O'Dea, M. H., Allali, N., Messens, J., Gellert, M., and Couturier, M. (1999). Interactions of CcdB with DNA gyrase. inactivation of Gyra, poisoning of the gyrase-DNA complex, and the antidote action of CcdA. J. Biol. Chem. 274, 10936-10944.
    • (1999) J. Biol. Chem , vol.274 , pp. 10936-10944
    • Bahassi, E.M.1    O'Dea, M.H.2    Allali, N.3    Messens, J.4    Gellert, M.5    Couturier, M.6
  • 6
    • 79952671832 scopus 로고    scopus 로고
    • The Escherichia coli extracellular death factor EDF induces the endoribonucleolytic activities of the toxins MazF and ChpBK
    • Belitsky, M., Avshalom, H., Erental, A., Yelin, I., Kumar, S., London, N., et al. (2011). The Escherichia coli extracellular death factor EDF induces the endoribonucleolytic activities of the toxins MazF and ChpBK. Mol. Cell 41, 625-635. doi: 10.1016/j.molcel.2011.02.023
    • (2011) Mol. Cell , vol.41 , pp. 625-635
    • Belitsky, M.1    Avshalom, H.2    Erental, A.3    Yelin, I.4    Kumar, S.5    London, N.6
  • 7
    • 80053582792 scopus 로고    scopus 로고
    • Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp
    • Bogdanove, A. J., Koebnik, R., Lu, H., Furutani, A., Angiuoli, S. V., Patil, P. B., et al. (2011). Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. J. Bacteriol. 193, 5450-5464. doi: 10.1128/JB.05262-11
    • (2011) J. Bacteriol , vol.193 , pp. 5450-5464
    • Bogdanove, A.J.1    Koebnik, R.2    Lu, H.3    Furutani, A.4    Angiuoli, S.V.5    Patil, P.B.6
  • 8
    • 84897491331 scopus 로고    scopus 로고
    • The HicA toxin from Burkholderia pseudomallei has a role in persister cell formation
    • Butt, A., Higman, V. A., Williams, C., Crump, M. P., Hemsley, C. M., Harmer, N., et al. (2014). The HicA toxin from Burkholderia pseudomallei has a role in persister cell formation. Biochem. J. 459, 333-344. doi: 10.1042/BJ20140073
    • (2014) Biochem. J , vol.459 , pp. 333-344
    • Butt, A.1    Higman, V.A.2    Williams, C.3    Crump, M.P.4    Hemsley, C.M.5    Harmer, N.6
  • 9
    • 84887997250 scopus 로고    scopus 로고
    • The Fic protein Doc uses an inverted substrate to phosphorylate and inactivate EF-Tu
    • Castro-Roa, D., Garcia-Pino, A., De Gieter, S., van Nuland, N. A. J., Loris, R., and Zenkin, N. (2013). The Fic protein Doc uses an inverted substrate to phosphorylate and inactivate EF-Tu. Nat. Chem. Biol. 9, 811-817. doi: 10.1038/nchembio.1364
    • (2013) Nat. Chem. Biol , vol.9 , pp. 811-817
    • Castro-Roa, D.1    Garcia-Pino, A.2    De Gieter, S.3    van Nuland, N.A.J.4    Loris, R.5    Zenkin, N.6
  • 10
    • 0038797797 scopus 로고    scopus 로고
    • RelE toxins from bacteria and Archaea cleave mRNAs on translating ribosomes, which are rescued by tmRNA
    • Christensen, S. K., and Gerdes, K. (2003). RelE toxins from bacteria and Archaea cleave mRNAs on translating ribosomes, which are rescued by tmRNA. Mol. Microbiol. 48, 1389-1400. doi: 10.1046/j.1365-2958.2003.03512.x
    • (2003) Mol. Microbiol , vol.48 , pp. 1389-1400
    • Christensen, S.K.1    Gerdes, K.2
  • 11
    • 0035807805 scopus 로고    scopus 로고
    • RelE, a global inhibitor of translation, is activated during nutritional stress
    • Christensen, S. K., Mikkelsen, M., Pedersen, K., and Gerdes, K. (2001). RelE, a global inhibitor of translation, is activated during nutritional stress. Proc. Natl. Acad. Sci. U.S.A. 98, 14328-14333. doi: 10.1073/pnas.251327898
    • (2001) Proc. Natl. Acad. Sci. U.S.A , vol.98 , pp. 14328-14333
    • Christensen, S.K.1    Mikkelsen, M.2    Pedersen, K.3    Gerdes, K.4
  • 12
    • 0041825422 scopus 로고    scopus 로고
    • Toxin-antitoxin loci as stress-response-elements: ChpAK/MazF and ChpBK cleave translated RNAs and are counteracted by tmRNA
    • Christensen, S. K., Pedersen, K., Hansen, F. G., and Gerdes, K. (2003). Toxin-antitoxin loci as stress-response-elements: ChpAK/MazF and ChpBK cleave translated RNAs and are counteracted by tmRNA. J. Mol. Biol. 332, 809-819. doi: 10.1016/S0022-2836(03)00922-7
    • (2003) J. Mol. Biol , vol.332 , pp. 809-819
    • Christensen, S.K.1    Pedersen, K.2    Hansen, F.G.3    Gerdes, K.4
  • 13
    • 34447500557 scopus 로고    scopus 로고
    • VapC-1 of nontypeable Haemophilus influenzae is a ribonuclease
    • Daines, D. A., Wu, M. H., and Yuan, S. Y. (2007). VapC-1 of nontypeable Haemophilus influenzae is a ribonuclease. J. Bacteriol. 189, 5041-5048. doi: 10.1128/JB.00290-07
    • (2007) J. Bacteriol , vol.189 , pp. 5041-5048
    • Daines, D.A.1    Wu, M.H.2    Yuan, S.Y.3
  • 14
    • 77957793364 scopus 로고    scopus 로고
    • Circoletto: visualizing sequence similarity with Circos
    • Darzentas, N. (2010). Circoletto: visualizing sequence similarity with Circos. Bioinformatics 26, 2620-2621. doi: 10.1093/bioinformatics/btq484
    • (2010) Bioinformatics , vol.26 , pp. 2620-2621
    • Darzentas, N.1
  • 15
    • 0037161811 scopus 로고    scopus 로고
    • Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
    • da Silva, A. C. R., Ferro, J. A., Reinach, F. C., Farah, C. S., Furlan, L. R., Quaggio, R. B., et al. (2002). Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature 417, 459-463. doi: 10.1038/417459a
    • (2002) Nature , vol.417 , pp. 459-463
    • da Silva, A.C.R.1    Ferro, J.A.2    Reinach, F.C.3    Farah, C.S.4    Furlan, L.R.5    Quaggio, R.B.6
  • 16
    • 80053982142 scopus 로고    scopus 로고
    • Absynte: a web tool to analyze the evolution of orthologous Archaeal and bacterial gene clusters
    • Despalins, A., Marsit, S., and Oberto, J. (2011). Absynte: a web tool to analyze the evolution of orthologous Archaeal and bacterial gene clusters. Bioinformatics 27, 2905-2906. doi: 10.1093/bioinformatics/btr473
    • (2011) Bioinformatics , vol.27 , pp. 2905-2906
    • Despalins, A.1    Marsit, S.2    Oberto, J.3
  • 17
    • 77950518443 scopus 로고    scopus 로고
    • A new member of the ribbon-helix-helix transcription factor superfamily from the plant pathogen Xanthomonas axonopodis pv. citri
    • Gallo, M., Ferrari, E., Eliseo, T., Amata, I., Pertinhez, T. A., Katsuyama, A. M., et al. (2010). A new member of the ribbon-helix-helix transcription factor superfamily from the plant pathogen Xanthomonas axonopodis pv. citri. J. Struct. Biol. 170, 21-31. doi: 10.1016/j.jsb.2009.12.022
    • (2010) J. Struct. Biol , vol.170 , pp. 21-31
    • Gallo, M.1    Ferrari, E.2    Eliseo, T.3    Amata, I.4    Pertinhez, T.A.5    Katsuyama, A.M.6
  • 18
    • 0036796467 scopus 로고    scopus 로고
    • CDART: protein homology by domain architecture
    • Geer, L. Y., Domrachev, M., Lipman, D. J., and Bryant, S. H. (2002). CDART: protein homology by domain architecture. Genome Res. 12, 1619-1623. doi: 10.1101/gr.278202
    • (2002) Genome Res , vol.12 , pp. 1619-1623
    • Geer, L.Y.1    Domrachev, M.2    Lipman, D.J.3    Bryant, S.H.4
  • 19
    • 0022764432 scopus 로고
    • Mechanism of postsegregational killing by the hok gene product of the parB system of plasmid R1 and its homology with the relF gene product of the E. coli relB operon
    • Gerdes, K., Bech, F. W., Jørgensen, S. T., Løbner-Olesen, A., Rasmussen, P. B., Atlung, T., et al. (1986). Mechanism of postsegregational killing by the hok gene product of the parB system of plasmid R1 and its homology with the relF gene product of the E. coli relB operon. EMBO J. 5, 2023-2029.
    • (1986) EMBO J , vol.5 , pp. 2023-2029
    • Gerdes, K.1    Bech, F.W.2    Jørgensen, S.T.3    Løbner-Olesen, A.4    Rasmussen, P.B.5    Atlung, T.6
  • 20
    • 17844370503 scopus 로고    scopus 로고
    • Prokaryotic toxin-antitoxin stress response loci
    • Gerdes, K., Christensen, S. K., and Løbner-Olesen, A. (2005). Prokaryotic toxin-antitoxin stress response loci. Nat. Rev. Microbiol. 3, 371-382. doi: 10.1038/nrmicro1147
    • (2005) Nat. Rev. Microbiol , vol.3 , pp. 371-382
    • Gerdes, K.1    Christensen, S.K.2    Løbner-Olesen, A.3
  • 21
    • 84872241785 scopus 로고    scopus 로고
    • Bacterial persistence and toxin-antitoxin loci
    • Gerdes, K., and Maisonneuve, E. (2012). Bacterial persistence and toxin-antitoxin loci. Annu. Rev. Microbiol. 66, 103-123. doi: 10.1146/annurev-micro-092611-150159
    • (2012) Annu. Rev. Microbiol , vol.66 , pp. 103-123
    • Gerdes, K.1    Maisonneuve, E.2
  • 22
    • 84886290812 scopus 로고    scopus 로고
    • Molecular mechanism of bacterial persistence by HipA
    • Germain, E., Castro-Roa, D., Zenkin, N., and Gerdes, K. (2013). Molecular mechanism of bacterial persistence by HipA. Mol. Cell 52, 248-254. doi: 10.1016/j.molcel.2013.08.045
    • (2013) Mol. Cell , vol.52 , pp. 248-254
    • Germain, E.1    Castro-Roa, D.2    Zenkin, N.3    Gerdes, K.4
  • 23
    • 84892892483 scopus 로고    scopus 로고
    • Toxin-antitoxin systems as multilevel interaction systems
    • Goeders, N., and Van Melderen, L. (2014). Toxin-antitoxin systems as multilevel interaction systems. Toxins 6, 304-324. doi: 10.3390/toxins6010304
    • (2014) Toxins , vol.6 , pp. 304-324
    • Goeders, N.1    Van Melderen, L.2
  • 24
    • 0842323753 scopus 로고    scopus 로고
    • Xanthomonas axonopodis pv. citri: factors affecting successful eradication of citrus canker
    • Graham, J. H., Gottwald, T. R., Cubero, J., and Achor, D. S. (2004). Xanthomonas axonopodis pv. citri: factors affecting successful eradication of citrus canker. Mol. Plant Pathol. 5, 1-15. doi: 10.1046/j.1364-3703.2004.00197.x
    • (2004) Mol. Plant Pathol , vol.5 , pp. 1-15
    • Graham, J.H.1    Gottwald, T.R.2    Cubero, J.3    Achor, D.S.4
  • 25
    • 84863243970 scopus 로고    scopus 로고
    • Antitoxin DinJ influences the general stress response through transcript stabilizer CspE
    • Hu, Y., Benedik, M. J., and Wood, T. K. (2012). Antitoxin DinJ influences the general stress response through transcript stabilizer CspE. Environ. Microbiol. 14, 669-679. doi: 10.1111/j.1462-2920.2011.02618.x
    • (2012) Environ. Microbiol , vol.14 , pp. 669-679
    • Hu, Y.1    Benedik, M.J.2    Wood, T.K.3
  • 26
    • 67650517830 scopus 로고    scopus 로고
    • Bacterial toxin HigB associates with ribosomes and mediates translation-dependent mRNA cleavage at A-rich sites
    • Hurley, J. M., and Woychik, N. A. (2009). Bacterial toxin HigB associates with ribosomes and mediates translation-dependent mRNA cleavage at A-rich sites. J. Biol. Chem. 284, 18605-18613. doi: 10.1074/jbc.M109.008763
    • (2009) J. Biol. Chem , vol.284 , pp. 18605-18613
    • Hurley, J.M.1    Woychik, N.A.2
  • 27
    • 84997530331 scopus 로고    scopus 로고
    • Complete genome sequence of Xanthomonas citri subsp. citri strain Aw12879, a restricted-host-range citrus canker-causing bacterium
    • Jalan, N., Kumar, D., Yu, F., Jones, J. B., Graham, J. H., and Wang, N. (2013). Complete genome sequence of Xanthomonas citri subsp. citri strain Aw12879, a restricted-host-range citrus canker-causing bacterium. Genome Announc. 1, 4-5. doi: 10.1128/genomeA.00235-13
    • (2013) Genome Announc , vol.1 , pp. 4-5
    • Jalan, N.1    Kumar, D.2    Yu, F.3    Jones, J.B.4    Graham, J.H.5    Wang, N.6
  • 28
    • 0036098378 scopus 로고    scopus 로고
    • ParE toxin encoded by the broad-host-range plasmid RK2 is an inhibitor of Escherichia coli gyrase
    • Jiang, Y., Pogliano, J., Helinski, D. R., and Konieczny, I. (2002). ParE toxin encoded by the broad-host-range plasmid RK2 is an inhibitor of Escherichia coli gyrase. Mol. Microbiol. 44, 971-979. doi: 10.1046/j.1365-2958.2002.02921.x
    • (2002) Mol. Microbiol , vol.44 , pp. 971-979
    • Jiang, Y.1    Pogliano, J.2    Helinski, D.R.3    Konieczny, I.4
  • 29
    • 60849121408 scopus 로고    scopus 로고
    • HicA of Escherichia coli defines a novel family of translation-independent mRNA interferases in bacteria and archaea
    • Jørgensen, M. G., Pandey, D. P., Jaskolska, M., and Gerdes, K. (2009). HicA of Escherichia coli defines a novel family of translation-independent mRNA interferases in bacteria and archaea. J. Bacteriol. 191, 1191-1199. doi: 10.1128/JB.01013-08
    • (2009) J. Bacteriol , vol.191 , pp. 1191-1199
    • Jørgensen, M.G.1    Pandey, D.P.2    Jaskolska, M.3    Gerdes, K.4
  • 30
    • 84890639139 scopus 로고    scopus 로고
    • HipA-mediated antibiotic persistence via phosphorylation of the glutamyl-tRNA-synthetase
    • Kaspy, I., Rotem, E., Weiss, N., Ronin, I., Balaban, N. Q., and Glaser, G. (2013). HipA-mediated antibiotic persistence via phosphorylation of the glutamyl-tRNA-synthetase. Nat. Commun. 4, 3001. doi: 10.1038/ncomms4001
    • (2013) Nat. Commun , vol.4 , pp. 3001
    • Kaspy, I.1    Rotem, E.2    Weiss, N.3    Ronin, I.4    Balaban, N.Q.5    Glaser, G.6
  • 31
    • 34547126009 scopus 로고    scopus 로고
    • Molecular and structural characterization of the PezAT chromosomal toxin-antitoxin system of the human pathogen Streptococcus pneumoniae
    • Khoo, S. K., Loll, B., Chan, W. T., Shoeman, R. L., Ngoo, L., Yeo, C. C., et al. (2007). Molecular and structural characterization of the PezAT chromosomal toxin-antitoxin system of the human pathogen Streptococcus pneumoniae. J. Biol. Chem. 282, 19606-19618. doi: 10.1074/jbc.M701703200
    • (2007) J. Biol. Chem , vol.282 , pp. 19606-19618
    • Khoo, S.K.1    Loll, B.2    Chan, W.T.3    Shoeman, R.L.4    Ngoo, L.5    Yeo, C.C.6
  • 32
    • 84859510110 scopus 로고    scopus 로고
    • Aconitase B is required for optimal growth of Xanthomonas campestris pv. vesicatoria in pepper plants
    • Kirchberg, J., Büttner, D., Thiemer, B., and Sawers, R. G. (2012). Aconitase B is required for optimal growth of Xanthomonas campestris pv. vesicatoria in pepper plants. PLoS ONE 7:e34941. doi: 10.1371/journal.pone.0034941
    • (2012) PLoS ONE , vol.7
    • Kirchberg, J.1    Büttner, D.2    Thiemer, B.3    Sawers, R.G.4
  • 33
    • 79959977077 scopus 로고    scopus 로고
    • Survival of pathogens of Brussels sprouts (Brassica oleracea Gemmifera Group) in crop residues
    • Köhl, J., Vlaswinkel, M., Groenenboom-de Haas, B. H., Kastelein, P., van Hoof, R. A., van der Wolf, J. M., et al. (2011). Survival of pathogens of Brussels sprouts (Brassica oleracea Gemmifera Group) in crop residues. Plant Pathol. 60, 661-670. doi: 10.1111/j.1365-3059.2010.02422.x
    • (2011) Plant Pathol , vol.60 , pp. 661-670
    • Köhl, J.1    Vlaswinkel, M.2    Groenenboom-de Haas, B.H.3    Kastelein, P.4    van Hoof, R.A.5    van der Wolf, J.M.6
  • 34
    • 33646245693 scopus 로고    scopus 로고
    • Induction of Escherichia coli chromosomal mazEF by stressful conditions causes an irreversible loss of viability
    • Kolodkin-Gal, I., and Engelberg-Kulka, H. (2006). Induction of Escherichia coli chromosomal mazEF by stressful conditions causes an irreversible loss of viability. J. Bacteriol. 188, 3420-3423. doi: 10.1128/JB.188.9.3420-3423.2006
    • (2006) J. Bacteriol , vol.188 , pp. 3420-3423
    • Kolodkin-Gal, I.1    Engelberg-Kulka, H.2
  • 35
    • 84907686017 scopus 로고    scopus 로고
    • Quorum sensing peptides mediating interspecies bacterial cell death as a novel class of antimicrobial agents
    • Kumar, S., and Engelberg-Kulka, H. (2014). Quorum sensing peptides mediating interspecies bacterial cell death as a novel class of antimicrobial agents. Curr. Opin. Microbiol. 21, 22-27. doi: 10.1016/j.mib.2014.09.001
    • (2014) Curr. Opin. Microbiol , vol.21 , pp. 22-27
    • Kumar, S.1    Engelberg-Kulka, H.2
  • 36
    • 84862950620 scopus 로고    scopus 로고
    • Xylella fastidiosa plasmid-encoded PemK toxin is an endoribonuclease
    • Lee, M. W., Rogers, E. E., and Stenger, D. C. (2012). Xylella fastidiosa plasmid-encoded PemK toxin is an endoribonuclease. Phytopathology 102, 32-40. doi: 10.1094/PHYTO-05-11-0150
    • (2012) Phytopathology , vol.102 , pp. 32-40
    • Lee, M.W.1    Rogers, E.E.2    Stenger, D.C.3
  • 37
    • 79959993198 scopus 로고    scopus 로고
    • Genome-wide mutagenesis of Xanthomonas axonopodis pv. citri reveals novel genetic determinants and regulation mechanisms of biofilm formation
    • Li, J., and Wang, N. (2011). Genome-wide mutagenesis of Xanthomonas axonopodis pv. citri reveals novel genetic determinants and regulation mechanisms of biofilm formation. PLoS ONE 6:e21804. doi: 10.1371/journal.pone.0021804
    • (2011) PLoS ONE , vol.6
    • Li, J.1    Wang, N.2
  • 38
    • 84883342218 scopus 로고    scopus 로고
    • (p)ppGpp controls bacterial persistence by stochastic induction of toxin-antitoxin activity
    • Maisonneuve, E., Castro-Camargo, M., and Gerdes, K. (2013). (p)ppGpp controls bacterial persistence by stochastic induction of toxin-antitoxin activity. Cell 154, 1140-1150. doi: 10.1016/j.cell.2013.07.048
    • (2013) Cell , vol.154 , pp. 1140-1150
    • Maisonneuve, E.1    Castro-Camargo, M.2    Gerdes, K.3
  • 40
    • 84892601578 scopus 로고    scopus 로고
    • Plasmids of carotenoid-producing Paracoccus spp. (Alphaproteobacteria)-structure, diversity and evolution
    • Maj, A., Dziewit, L., Czarnecki, J., Wlodarczyk, M., Baj, J., Skrzypczyk, G., et al. (2013). Plasmids of carotenoid-producing Paracoccus spp. (Alphaproteobacteria)-structure, diversity and evolution. PLoS ONE 8:e80258. doi: 10.1371/journal.pone.0080258
    • (2013) PLoS ONE , vol.8
    • Maj, A.1    Dziewit, L.2    Czarnecki, J.3    Wlodarczyk, M.4    Baj, J.5    Skrzypczyk, G.6
  • 42
    • 84866323496 scopus 로고    scopus 로고
    • Global expression profile of biofilm resistance to antimicrobial compounds in the plant-pathogenic bacterium Xylella fastidiosa reveals evidence of persister cells
    • Muranaka, L. S., Takita, M. A., Olivato, J. C., Kishi, L. T., and de Souza, A. A. (2012). Global expression profile of biofilm resistance to antimicrobial compounds in the plant-pathogenic bacterium Xylella fastidiosa reveals evidence of persister cells. J. Bacteriol. 194, 4561-4569. doi: 10.1128/JB.00436-12
    • (2012) J. Bacteriol , vol.194 , pp. 4561-4569
    • Muranaka, L.S.1    Takita, M.A.2    Olivato, J.C.3    Kishi, L.T.4    de Souza, A.A.5
  • 43
    • 79953708539 scopus 로고    scopus 로고
    • A novel mechanism of programmed cell death in bacteria by toxin-antitoxin systems corrupts peptidoglycan synthesis
    • Mutschler, H., Gebhardt, M., Shoeman, R. L., and Meinhart, A. (2011). A novel mechanism of programmed cell death in bacteria by toxin-antitoxin systems corrupts peptidoglycan synthesis. PLoS Biol. 9:e1001033. doi: 10.1371/journal.pbio.1001033
    • (2011) PLoS Biol , vol.9
    • Mutschler, H.1    Gebhardt, M.2    Shoeman, R.L.3    Meinhart, A.4
  • 44
    • 84655169530 scopus 로고    scopus 로고
    • ε/ζ systems: their role in resistance, virulence, and their potential for antibiotic development
    • Mutschler, H., and Meinhart, A. (2011). ε/ζ systems: their role in resistance, virulence, and their potential for antibiotic development. J. Mol. Med. 89, 1183-1194. doi: 10.1007/s00109-011-0797-4
    • (2011) J. Mol. Med , vol.89 , pp. 1183-1194
    • Mutschler, H.1    Meinhart, A.2
  • 45
    • 84872181103 scopus 로고    scopus 로고
    • SyntTax: a web server linking synteny to prokaryotic taxonomy
    • Oberto, J. (2013). SyntTax: a web server linking synteny to prokaryotic taxonomy. BMC Bioinformatics 14:4. doi: 10.1186/1471-2105-14-4
    • (2013) BMC Bioinformatics , vol.14 , pp. 4
    • Oberto, J.1
  • 46
    • 0020711037 scopus 로고
    • Partition mechanism of F plasmid: two plasmid gene-encoded products and a cis-acting region are involved in partition
    • Ogura, T., and Hiraga, S. (1983). Partition mechanism of F plasmid: two plasmid gene-encoded products and a cis-acting region are involved in partition. Cell 32, 351-360. doi: 10.1016/0092-8674(83)90454-3
    • (1983) Cell , vol.32 , pp. 351-360
    • Ogura, T.1    Hiraga, S.2
  • 47
    • 14244266086 scopus 로고    scopus 로고
    • Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes
    • Pandey, D. P., and Gerdes, K. (2005). Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes. Nucleic Acids Res. 33, 966-976. doi: 10.1093/nar/gki201
    • (2005) Nucleic Acids Res , vol.33 , pp. 966-976
    • Pandey, D.P.1    Gerdes, K.2
  • 48
    • 84938768047 scopus 로고    scopus 로고
    • N-acetylcysteine interferes with the biofilm formation, motility and epiphytic behaviour of Xanthomonas citri subsp. citri
    • Picchi, S. C., Takita, M. A., Coletta-Filho, H. D., Machado, M. A., and de Souza, A. A. (2016). N-acetylcysteine interferes with the biofilm formation, motility and epiphytic behaviour of Xanthomonas citri subsp. citri. Plant Pathol. 65, 561-569. doi: 10.1111/ppa.12430
    • (2016) Plant Pathol , vol.65 , pp. 561-569
    • Picchi, S.C.1    Takita, M.A.2    Coletta-Filho, H.D.3    Machado, M.A.4    de Souza, A.A.5
  • 49
    • 75449104484 scopus 로고    scopus 로고
    • The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae
    • Pieretti, I., Royer, M., Barbe, V., Carrere, S., Koebnik, R., Cociancich, S., et al. (2009). The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae. BMC Genomics 10:616. doi: 10.1186/1471-2164-10-616
    • (2009) BMC Genomics , vol.10 , pp. 616
    • Pieretti, I.1    Royer, M.2    Barbe, V.3    Carrere, S.4    Koebnik, R.5    Cociancich, S.6
  • 50
    • 22344455805 scopus 로고    scopus 로고
    • Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris
    • Qian, W., Jia, Y., Ren, S.-X., He, Y.-Q., Feng, J.-X., Lu, L.-F., et al. (2005). Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res. 15, 757-767. doi: 10.1101/gr.3378705
    • (2005) Genome Res , vol.15 , pp. 757-767
    • Qian, W.1    Jia, Y.2    Ren, S.-X.3    He, Y.-Q.4    Feng, J.-X.5    Lu, L.-F.6
  • 51
    • 84937953165 scopus 로고    scopus 로고
    • A cis-acting antitoxin domain within the chromosomal toxin-antitoxin module EzeT of Escherichia coli quenches toxin activity
    • Rocker, A., and Meinhart, A. (2015). A cis-acting antitoxin domain within the chromosomal toxin-antitoxin module EzeT of Escherichia coli quenches toxin activity. Mol. Microbiol. 97, 589-604. doi: 10.1111/mmi.13051
    • (2015) Mol. Microbiol , vol.97 , pp. 589-604
    • Rocker, A.1    Meinhart, A.2
  • 52
    • 46049106335 scopus 로고    scopus 로고
    • Chromosomal toxin-antitoxin systems may act as antiaddiction modules
    • Saavedra De Bast, M., Mine, N., and Van Melderen, L. (2008). Chromosomal toxin-antitoxin systems may act as antiaddiction modules. J. Bacteriol. 190, 4603-4609. doi: 10.1128/JB.00357-08
    • (2008) J. Bacteriol , vol.190 , pp. 4603-4609
    • Saavedra De Bast, M.1    Mine, N.2    Van Melderen, L.3
  • 53
    • 46049099151 scopus 로고    scopus 로고
    • Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
    • Salzberg, S. L., Sommer, D. D., Schatz, M. C., Phillippy, A. M., Rabinowicz, P. D., Tsuge, S., et al. (2008). Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics 9:204. doi: 10.1186/1471-2164-9-204
    • (2008) BMC Genomics , vol.9 , pp. 204
    • Salzberg, S.L.1    Sommer, D.D.2    Schatz, M.C.3    Phillippy, A.M.4    Rabinowicz, P.D.5    Tsuge, S.6
  • 54
    • 58449087611 scopus 로고    scopus 로고
    • Molecular mechanisms of HipA-mediated multidrug tolerance and its neutralization by HipB
    • Schumacher, M. A., Piro, K. M., Xu, W., Hansen, S., Lewis, K., and Brennan, R. G. (2009). Molecular mechanisms of HipA-mediated multidrug tolerance and its neutralization by HipB. Science 323, 396-401. doi: 10.1126/science.1163806
    • (2009) Science , vol.323 , pp. 396-401
    • Schumacher, M.A.1    Piro, K.M.2    Xu, W.3    Hansen, S.4    Lewis, K.5    Brennan, R.G.6
  • 55
    • 79959384824 scopus 로고    scopus 로고
    • Prevalence and significance of plasmid maintenance functions in the virulence plasmids of pathogenic bacteria
    • Sengupta, M., and Austin, S. (2011). Prevalence and significance of plasmid maintenance functions in the virulence plasmids of pathogenic bacteria. Infect. Immun. 79, 2502-2509. doi: 10.1128/IAI.00127-11
    • (2011) Infect. Immun , vol.79 , pp. 2502-2509
    • Sengupta, M.1    Austin, S.2
  • 56
    • 39149110856 scopus 로고    scopus 로고
    • RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci in prokaryotes
    • Sevin, E. W., and Barloy-Hubler, F. (2007). RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci in prokaryotes. Genome Biol. 8, R155. doi: 10.1186/gb-2007-8-8-r155
    • (2007) Genome Biol , vol.8
    • Sevin, E.W.1    Barloy-Hubler, F.2
  • 57
    • 78651266381 scopus 로고    scopus 로고
    • TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea
    • Shao, Y., Harrison, E. M., Bi, D., Tai, C., He, X., Ou, H.-Y., et al. (2011). TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea. Nucleic Acids Res. 39, D606-D611. doi: 10.1093/nar/gkq908
    • (2011) Nucleic Acids Res , vol.39 , pp. D606-D611
    • Shao, Y.1    Harrison, E.M.2    Bi, D.3    Tai, C.4    He, X.5    Ou, H.-Y.6
  • 58
    • 84920911520 scopus 로고    scopus 로고
    • Expression of stress and virulence genes in Escherichia coli O157:H7 heat shocked in fresh dairy compost
    • Singh, R., and Jiang, X. (2015). Expression of stress and virulence genes in Escherichia coli O157:H7 heat shocked in fresh dairy compost. J. Food Prot. 78, 31-41. doi: 10.4315/0362-028X.JFP-13-529
    • (2015) J. Food Prot , vol.78 , pp. 31-41
    • Singh, R.1    Jiang, X.2
  • 59
    • 84950141301 scopus 로고    scopus 로고
    • Temperature stress promotes cell division arrest in Xanthomonas citri subsp. citri
    • Sumares, J. A. P., Morão, L. G., Martins, P. M. M., Martins, D. A. B., Gomes, E., Balesque, J. Jr., et al. (2016). Temperature stress promotes cell division arrest in Xanthomonas citri subsp. citri. Microbiologyopen 5, 244-253. doi: 10.1002/mbo3.323
    • (2016) Microbiologyopen , vol.5 , pp. 244-253
    • Sumares, J.A.P.1    Morão, L.G.2    Martins, P.M.M.3    Martins, D.A.B.4    Gomes, E.5    Balesque, J.6
  • 60
    • 33947330447 scopus 로고    scopus 로고
    • Chromosomal toxin-antitoxin loci can diminish large-scale genome reductions in the absence of selection
    • Szekeres, S., Dauti, M., Wilde, C., Mazel, D., and Rowe-Magnus, D. A. (2007). Chromosomal toxin-antitoxin loci can diminish large-scale genome reductions in the absence of selection. Mol. Microbiol. 63, 1588-1605. doi: 10.1111/j.1365-2958.2007.05613.x
    • (2007) Mol. Microbiol , vol.63 , pp. 1588-1605
    • Szekeres, S.1    Dauti, M.2    Wilde, C.3    Mazel, D.4    Rowe-Magnus, D.A.5
  • 61
    • 27144440067 scopus 로고    scopus 로고
    • Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence
    • Thieme, F., Koebnik, R., Bekel, T., Berger, C., Boch, J., Büttner, D., et al. (2005). Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. J. Bacteriol. 187, 7254-7266. doi: 10.1128/JB.187.21.7254-7266.2005
    • (2005) J. Bacteriol , vol.187 , pp. 7254-7266
    • Thieme, F.1    Koebnik, R.2    Bekel, T.3    Berger, C.4    Boch, J.5    Büttner, D.6
  • 62
    • 84881025452 scopus 로고    scopus 로고
    • Characterisation of the stbD/E toxin-antitoxin system of pEP36, a plasmid of the plant pathogen Erwinia pyrifoliae
    • Unterholzner, S. J., Hailer, B., Poppenberger, B., and Rozhon, W. (2013). Characterisation of the stbD/E toxin-antitoxin system of pEP36, a plasmid of the plant pathogen Erwinia pyrifoliae. Plasmid 70, 216-225. doi: 10.1016/j.plasmid.2013.04.002
    • (2013) Plasmid , vol.70 , pp. 216-225
    • Unterholzner, S.J.1    Hailer, B.2    Poppenberger, B.3    Rozhon, W.4
  • 63
    • 78649649439 scopus 로고    scopus 로고
    • Toxin-antitoxin systems: why so many, what for?
    • Van Melderen, L. (2010). Toxin-antitoxin systems: why so many, what for? Curr. Opin. Microbiol. 13, 781-785. doi: 10.1016/j.mib.2010.10.006
    • (2010) Curr. Opin. Microbiol , vol.13 , pp. 781-785
    • Van Melderen, L.1
  • 64
    • 63449102873 scopus 로고    scopus 로고
    • Bacterial toxin-antitoxin systems: more than selfish entities?
    • Van Melderen, L., and Saavedra De Bast, M. (2009). Bacterial toxin-antitoxin systems: more than selfish entities? PLoS Genet. 5:e1000437. doi: 10.1371/journal.pgen.1000437
    • (2009) PLoS Genet , vol.5
    • Van Melderen, L.1    Saavedra De Bast, M.2
  • 65
    • 77952581569 scopus 로고    scopus 로고
    • Emerging infectious diseases of crop plants in developing countries: impact on agriculture and socio-economic consequences
    • Vurro, M., Bonciani, B., and Vannacci, G. (2010). Emerging infectious diseases of crop plants in developing countries: impact on agriculture and socio-economic consequences. Food Secur. 2, 113-132. doi: 10.1007/s12571-010-0062-7
    • (2010) Food Secur , vol.2 , pp. 113-132
    • Vurro, M.1    Bonciani, B.2    Vannacci, G.3
  • 66
    • 80052611381 scopus 로고    scopus 로고
    • Toxin-antitoxin systems influence biofilm and persister cell formation and the general stress response
    • Wang, X., and Wood, T. K. (2011). Toxin-antitoxin systems influence biofilm and persister cell formation and the general stress response. Appl. Environ. Microbiol. 77, 5577-5583. doi: 10.1128/AEM.05068-11
    • (2011) Appl. Environ. Microbiol , vol.77 , pp. 5577-5583
    • Wang, X.1    Wood, T.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.