CRISPR/Cas9 genome editing of rubber producing dandelion Taraxacum kok-saghyz using Agrobacterium rhizogenes without selection

Industrial Crops and Products

Volumn 89, Issue , 2016, Pages 356-362

  Iaffaldano, Brian ^a   Zhang, Yingxiao ^a   Cornish, Katrina ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

Agrobacterium rhizogenes; Alternative natural rubber; CRISPR Cas9; Genome editing; Hairy roots; Taraxacum kok saghyz

Indexed keywords

BIOCHEMISTRY; BIOSYNTHESIS; EFFICIENCY; ENCODING (SYMBOLS); GENE ENCODING; GENES; MUTAGENESIS; POLYSACCHARIDES;

AGROBACTERIUM RHIZOGENES; ALTERNATIVE SOURCE; CRISPR/CAS9; HAIRY ROOTS; HIGH MOLECULAR WEIGHT; RUBBER BIOSYNTHESIS; RUBBER PRODUCING CROPS; TARAXACUM KOK-SAGHYZ;

RUBBER;

ALLELE; ANTIBIOTICS; BACTERIUM; BIOTECHNOLOGY; DOMESTICATION; GENOME; HERB; MICROBIAL ACTIVITY; MUTAGENICITY; PROTEIN; RESEARCH METHOD; RUBBER;

AGROBACTERIUM RHIZOGENES; TARAXACUM; TARAXACUM KOK-SAGHYZ; TARAXACUM OFFICINALE;

EID: 84973539348     PISSN: 09266690     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.indcrop.2016.05.029     Document Type: Article

References (33)

1. Benson E. Plant Conservation Biotechnology 2002, CRC Press, Retrieved from:. https://books.google.com/books?id=SFuzZ1pWpxYC%26printsec=frontcover%26source=gbs_ge_summary_r%26cad=0#v=onepage%26q%26f=false.
2. Bortesi L., Fischer R. The CRISPR/Cas9 system for plant genome editing and beyond. Biotechnol. Adv. 2015, 33:41-52. 10.1016/j.biotechadv.2014.12.006.
3. Cai G., Li G., Ye H., Li G. Hairy root culture of Artemisia annua L. by Ri plasmid transformation and biosynthesis of artemisinin. Chin. J. Biotechnol. 1995, 11:227-235.
4. Cai Y., Chen L., Liu X., Sun S., Wu C., Jiang B., Han T., Hou W. CRISPR/Cas9-mediated genome editing in soybean hairy roots. PLoS One 2015, 10:e0136064. 10.1371/journal.pone.0136064.
5. Cornish K., Xie W. Natural rubber biosynthesis in plants: rubber transferase. Methods in Enzymology 2012, 63-82. Academic Press, (Chapter four). D.A. Hopwood (Ed.).
6. Cornish, K., Bates, G.M., McNulty, S.K., Kopicky, S.E., Grewal, S., Rossington, J., Michel, F., Walker Jr., S., and Kleinhenz, M.D., 2013. Buckeye Gold storage: a study of rubber production in Taraxacum kok-saghyz with an emphasis on post-harvest storage. USA Tire Technology International 2013, UKIP Media & Events Ltd., Dorking.
7. Gamborg O.L., Miller R.A., Ojima K. Nutrient requirements of suspension cultures of soybean root cells. Exp. Cell Res. 1968, 50:151-158. 10.1016/0014-4827(68)90403-5.
8. Gao J., Wang G., Ma S., Xie X., Wu X., Zhang X., Wu Y., Zhao P., Xia Q. CRISPR/Cas9-mediated targeted mutagenesis in Nicotiana tabacum. Plant Mol. Biol. 2015, 87:99-110. 10.1007/s11103-014-0263-0.
9. Jacobs T.B., LaFayette P.R., Schmitz R.J., Parrott W.A. Targeted genome modifications in soybean with CRISPR/Cas9. BMC Biotechnol. 2015, 15:16. 10.1186/s12896-015-0131-2.
10. Jia H., Wang N. Targeted genome editing of sweet orange using Cas9/sgRNA. PLoS One 2014, 9:e93806. 10.1371/journal.pone.0093806.
11. Jiang W., Zhou H., Bi H., Fromm M., Yang B., Weeks D.P. Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice. Nucleic Acids Res. 2013, 41:e188. 10.1093/nar/gkt780.
12. Jinek M., Chylinski K., Fonfara I., Hauer M., Doudna J.A., Charpentier E. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 2012, 337:816-821. 10.1126/science.1225829.
13. Kabelka E., Franchino B., Francis D.M. Two loci from Lycopersicon hirsutum LA407 confer resistance to strains of Clavibacter michiganensis subsp. michiganensis. Phytopathology 2002, 92:504-510. 10.1094/PHYTO.2002.92.5.504.
14. Kim Y., Wyslouzil B.E., Weathers P.J. Secondary metabolism of hairy root cultures in bioreactors. In Vitro Cell. Dev. Biol. Plant 2002, 38:1-10. 10.1079/IVP2001243.
15. Li J.F., Norville J.E., Aach J., McCormack M., Zhang D., Bush J., Church G.M., Sheen J. Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat. Biotechnol. 2013, 31:688-691. 10.1038/nbt.2654.
16. Lowder L.G., Paul J.W., Baltes N.J., Voytas D.F., Zhang Y., Zhang D., Tang X., Zheng X., Hsieh T.F., Qi Y. A CRISPR/Cas9 toolbox for multiplexed plant genome editing and transcriptional regulation. Plant Physiol. 2015, 00636. 10.1104/pp.15.00636.
17. Mooibroek H., Cornish K. Alternative sources of natural rubber. Appl. Microbiol. Biotechnol. 2000, 53:355-365.
18. Murashige T., Skoog F. A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol. Plant. 1962, 15:473-497. 10.1111/j.1399-3054.1962.tb08052.x.
19. Naito Y., Hino K., Bono H., Ui-Tei K. CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites. Bioinformatics 2015, 31:1120-1123. 10.1093/bioinformatics/btu743.
20. Nekrasov V., Staskawicz B., Weigel D., Jones J.D.G., Kamoun S. Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nat. Biotechnol. 2013, 31:691-693. 10.1038/nbt.2655.
21. Parry J.M., Shamsher M., Skibinski D.O.F. Restriction site mutation analysis, a proposed methodology for the detection and study of DNA base changes following mutagen exposure. Mutagenesis 1990, 5:209-212. 10.1093/mutage/5.3.209.
22. Robinson J.T., Thorvaldsdóttir H., Winckler W., Guttman M., Lander E.S., Getz G., Mesirov J.P. Integrative genomics viewer. Nat. Biotechnol. 2011, 29:24-26. 10.1038/nbt.1754.
23. Ron M., Kajala K., Pauluzzi G., Wang D., Reynoso M.A., Zumstein K., Garcha J., Winte S., Masson H., Inagaki S., Federici F., Sinha N., Deal R.B., Bailey-Serres J., Brady S.M. Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model. Plant Physiol. 2014, 166:455-469. 10.1104/pp.114.239392.
24. Sander J.D., Joung J.K. CRISPR-Cas systems for editing, regulating and targeting genomes. Nat. Biotechnol. 2014, 32:347-355. 10.1038/nbt.2842.
25. Shan Q., Wang Y., Li J., Zhang Y., Chen K., Liang Z., Zhang K., Liu J., Xi J.J., Qiu J.L., Gao C. Targeted genome modification of crop plants using a CRISPR-Cas system. Nat. Biotechnol. 2013, 31:686-688. 10.1038/nbt.2650.
26. Srivastava S., Srivastava A.K. Hairy root culture for mass-production of high-value secondary metabolites. Crit. Rev. Biotechnol. 2007, 27:29-43. 10.1080/07388550601173918.
27. Sun X., Hu Z., Chen R., Jiang Q., Song G., Zhang H., Xi Y. Targeted mutagenesis in soybean using the CRISPR-Cas9 system. Sci. Rep. 2015, 5:10342. 10.1038/srep10342.
28. Thorvaldsdóttir H., Robinson J.T., Mesirov J.P. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinform. 2013, 14:178-192. 10.1093/bib/bbs017.
29. Van Laere A., Van Den Ende W. Inulin metabolism in dicots: chicory as a model system. Plant Cell Environ. 2002, 25:803-813. 10.1046/j.1365-3040.2002.00865.x.
30. Vincze T., Posfai J., Roberts R.J. NEBcutter: a program to cleave DNA with restriction enzymes. Nucleic Acids Res. 2003, 31:3688-3691.
31. Wang S., Zhang S., Wang W., Xiong X., Meng F., Cui X. Efficient targeted mutagenesis in potato by the CRISPR/Cas9 system. Plant Cell Rep. 2015, 34:1473-1476. 10.1007/s00299-015-1816-7.
32. Xie K., Minkenberg B., Yang Y. Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system. Proc. Natl. Acad. Sci. U. S. A. 2015, 112:3570-3575. 10.1073/pnas.1420294112.
33. Zhang Y., Iaffaldano B.J., Xie W., Blakeslee J.J., Cornish K. Rapid and hormone-free Agrobacterium rhizogenes-mediated transformation in rubber producing dandelions Taraxacum kok-saghyz and T. brevicorniculatum. Ind. Crops Prod. 2015, 66:110-118. 10.1016/j.indcrop.2014.12.013.