메뉴 건너뛰기




Volumn 9, Issue , 2016, Pages 87-96

Ligand-induced Ordering of the C-terminal Tail Primes STING for Phosphorylation by TBK1

Author keywords

cGAMP.; Molecular dynamics simulation; STING C terminal tail; TBK1; Type I IFNs

Indexed keywords

BETA INTERFERON; CYCLIC GMP; INTERFERON REGULATORY FACTOR 3; CYCLIC AMP; LIGAND; MEMBRANE PROTEIN; MPYS PROTEIN, HUMAN; PROTEIN BINDING; PROTEIN SERINE THREONINE KINASE; TBK1 PROTEIN, HUMAN;

EID: 84971667795     PISSN: None     EISSN: 23523964     Source Type: Journal    
DOI: 10.1016/j.ebiom.2016.05.039     Document Type: Article
Times cited : (51)

References (33)
  • 1
    • 84879385334 scopus 로고    scopus 로고
    • cGAS produces a 2′–5′-linked cyclic dinucleotide second messenger that activates STING
    • Ablasser, A., Goldeck, M., et al. cGAS produces a 2′–5′-linked cyclic dinucleotide second messenger that activates STING. Nature 498:7454 (2013), 380–384.
    • (2013) Nature , vol.498 , Issue.7454 , pp. 380-384
    • Ablasser, A.1    Goldeck, M.2
  • 2
    • 84946416234 scopus 로고    scopus 로고
    • GROMACS: high performance molecular simulations through multi-level parallelism from laptops to supercomputers
    • Abraham, M.J., Murtola, T., et al. GROMACS: high performance molecular simulations through multi-level parallelism from laptops to supercomputers. SoftwareX 1-2 (2015), 19–25.
    • (2015) SoftwareX , vol.1-2 , pp. 19-25
    • Abraham, M.J.1    Murtola, T.2
  • 3
    • 0021107965 scopus 로고
    • Solvent-accessible surfaces of proteins and nucleic acids
    • Connolly, M.L., Solvent-accessible surfaces of proteins and nucleic acids. Science 221:4612 (1983), 709–713.
    • (1983) Science , vol.221 , Issue.4612 , pp. 709-713
    • Connolly, M.L.1
  • 4
    • 84878572947 scopus 로고    scopus 로고
    • The innate immune DNA sensor cGAS produces a noncanonical cyclic dinucleotide that activates human STING
    • Diner, E.J., Burdette, D.L., et al. The innate immune DNA sensor cGAS produces a noncanonical cyclic dinucleotide that activates human STING. Cell Rep. 3:5 (2013), 1355–1361.
    • (2013) Cell Rep. , vol.3 , Issue.5 , pp. 1355-1361
    • Diner, E.J.1    Burdette, D.L.2
  • 5
    • 79954415213 scopus 로고    scopus 로고
    • Analyzing and visualizing residue networks of protein structures
    • Doncheva, N.T., Klein, K., et al. Analyzing and visualizing residue networks of protein structures. Trends Biochem. Sci. 36:4 (2011), 179–182.
    • (2011) Trends Biochem. Sci. , vol.36 , Issue.4 , pp. 179-182
    • Doncheva, N.T.1    Klein, K.2
  • 6
    • 84882815198 scopus 로고    scopus 로고
    • Structure-function analysis of STING activation by c[G(2′,5′)pA(3′,5′)p] and targeting by antiviral DMXAA
    • Gao, P., Ascano, M., et al. Structure-function analysis of STING activation by c[G(2′,5′)pA(3′,5′)p] and targeting by antiviral DMXAA. Cell 154:4 (2013), 748–762.
    • (2013) Cell , vol.154 , Issue.4 , pp. 748-762
    • Gao, P.1    Ascano, M.2
  • 7
    • 84907409467 scopus 로고    scopus 로고
    • Binding-pocket and lid-region substitutions render human STING sensitive to the species-specific drug DMXAA
    • Gao, P., Zillinger, T., et al. Binding-pocket and lid-region substitutions render human STING sensitive to the species-specific drug DMXAA. Cell Rep. 8:6 (2014), 1668–1676.
    • (2014) Cell Rep. , vol.8 , Issue.6 , pp. 1668-1676
    • Gao, P.1    Zillinger, T.2
  • 8
    • 84863722786 scopus 로고    scopus 로고
    • The structural basis for the sensing and binding of cyclic di-GMP by STING
    • Huang, Y.H., Liu, X.Y., et al. The structural basis for the sensing and binding of cyclic di-GMP by STING. Nat. Struct. Mol. Biol. 19:7 (2012), 728–730.
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , Issue.7 , pp. 728-730
    • Huang, Y.H.1    Liu, X.Y.2
  • 9
    • 53349178089 scopus 로고    scopus 로고
    • STING is an endoplasmic reticulum adaptor that facilitates innate immune signalling
    • Ishikawa, H., Barber, G.N., STING is an endoplasmic reticulum adaptor that facilitates innate immune signalling. Nature 455:7213 (2008), 674–678.
    • (2008) Nature , vol.455 , Issue.7213 , pp. 674-678
    • Ishikawa, H.1    Barber, G.N.2
  • 10
    • 70349943834 scopus 로고    scopus 로고
    • STING regulates intracellular DNA-mediated, type I interferon-dependent innate immunity
    • Ishikawa, H., Ma, Z., et al. STING regulates intracellular DNA-mediated, type I interferon-dependent innate immunity. Nature 461:7265 (2009), 788–792.
    • (2009) Nature , vol.461 , Issue.7265 , pp. 788-792
    • Ishikawa, H.1    Ma, Z.2
  • 11
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • Jones, D.T., Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol. 292:2 (1999), 195–202.
    • (1999) J. Mol. Biol. , vol.292 , Issue.2 , pp. 195-202
    • Jones, D.T.1
  • 12
    • 35348921764 scopus 로고    scopus 로고
    • The Atg5 Atg12 conjugate associates with innate antiviral immune responses
    • Jounai, N., Takeshita, F., et al. The Atg5 Atg12 conjugate associates with innate antiviral immune responses. Proc. Natl. Acad. Sci. U. S. A. 104:35 (2007), 14050–14055.
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , Issue.35 , pp. 14050-14055
    • Jounai, N.1    Takeshita, F.2
  • 13
    • 3042683893 scopus 로고    scopus 로고
    • eF-site and PDBjViewer: database and viewer for protein functional sites
    • Kinoshita, K., Nakamura, H., eF-site and PDBjViewer: database and viewer for protein functional sites. Bioinformatics 20:8 (2004), 1329–1330.
    • (2004) Bioinformatics , vol.20 , Issue.8 , pp. 1329-1330
    • Kinoshita, K.1    Nakamura, H.2
  • 14
    • 84886789626 scopus 로고    scopus 로고
    • Cyclic dinucleotides trigger ULK1 (ATG1) phosphorylation of STING to prevent sustained innate immune signaling
    • Konno, H., Konno, K., et al. Cyclic dinucleotides trigger ULK1 (ATG1) phosphorylation of STING to prevent sustained innate immune signaling. Cell 155:3 (2013), 688–698.
    • (2013) Cell , vol.155 , Issue.3 , pp. 688-698
    • Konno, H.1    Konno, K.2
  • 15
    • 84875814149 scopus 로고    scopus 로고
    • Crystal structure and mechanism of activation of TANK-binding kinase 1
    • Larabi, A., Devos, J.M., et al. Crystal structure and mechanism of activation of TANK-binding kinase 1. Cell Rep. 3:3 (2013), 734–746.
    • (2013) Cell Rep. , vol.3 , Issue.3 , pp. 734-746
    • Larabi, A.1    Devos, J.M.2
  • 16
    • 0031893220 scopus 로고    scopus 로고
    • Virus-dependent phosphorylation of the IRF-3 transcription factor regulates nuclear translocation, transactivation potential, and proteasome-mediated degradation
    • Lin, R., Heylbroeck, C., et al. Virus-dependent phosphorylation of the IRF-3 transcription factor regulates nuclear translocation, transactivation potential, and proteasome-mediated degradation. Mol. Cell. Biol. 18:5 (1998), 2986–2996.
    • (1998) Mol. Cell. Biol. , vol.18 , Issue.5 , pp. 2986-2996
    • Lin, R.1    Heylbroeck, C.2
  • 17
    • 84924778328 scopus 로고    scopus 로고
    • Phosphorylation of innate immune adaptor proteins MAVS, STING, and TRIF induces IRF3 activation
    • (aaa2630)
    • Liu, S., Cai, X., et al. Phosphorylation of innate immune adaptor proteins MAVS, STING, and TRIF induces IRF3 activation. Science, 347(6227), 2015 (aaa2630).
    • (2015) Science , vol.347 , Issue.6227
    • Liu, S.1    Cai, X.2
  • 18
    • 0028304962 scopus 로고
    • Satisfying hydrogen bonding potential in proteins
    • McDonald, I.K., Thornton, J.M., Satisfying hydrogen bonding potential in proteins. J. Mol. Biol. 238:5 (1994), 777–793.
    • (1994) J. Mol. Biol. , vol.238 , Issue.5 , pp. 777-793
    • McDonald, I.K.1    Thornton, J.M.2
  • 19
    • 0000758624 scopus 로고
    • Numerical calculations of electrostatic potentials of protein-solvent systems by the self consistent boundary method
    • Nakamura, H., Nishida, S., Numerical calculations of electrostatic potentials of protein-solvent systems by the self consistent boundary method. J. Phys. Soc. Jpn. 56 (1987), 1609–1622.
    • (1987) J. Phys. Soc. Jpn. , vol.56 , pp. 1609-1622
    • Nakamura, H.1    Nishida, S.2
  • 20
    • 0242574745 scopus 로고    scopus 로고
    • Crystal structure of IRF-3 reveals mechanism of autoinhibition and virus-induced phosphoactivation
    • Qin, B.Y., Liu, C., et al. Crystal structure of IRF-3 reveals mechanism of autoinhibition and virus-induced phosphoactivation. Nat. Struct. Biol. 10:11 (2003), 913–921.
    • (2003) Nat. Struct. Biol. , vol.10 , Issue.11 , pp. 913-921
    • Qin, B.Y.1    Liu, C.2
  • 21
    • 79251506939 scopus 로고    scopus 로고
    • The N-ethyl-N-nitrosourea-induced Goldenticket mouse mutant reveals an essential function of Sting in the in vivo interferon response to Listeria monocytogenes and cyclic dinucleotides
    • Sauer, J.D., Sotelo-Troha, K., et al. The N-ethyl-N-nitrosourea-induced Goldenticket mouse mutant reveals an essential function of Sting in the in vivo interferon response to Listeria monocytogenes and cyclic dinucleotides. Infect. Immun. 79:2 (2011), 688–694.
    • (2011) Infect. Immun. , vol.79 , Issue.2 , pp. 688-694
    • Sauer, J.D.1    Sotelo-Troha, K.2
  • 22
    • 34548738213 scopus 로고    scopus 로고
    • POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix
    • Shimizu, K., Hirose, S., et al. POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix. Bioinformatics 23:17 (2007), 2337–2338.
    • (2007) Bioinformatics , vol.23 , Issue.17 , pp. 2337-2338
    • Shimizu, K.1    Hirose, S.2
  • 23
    • 84879841532 scopus 로고    scopus 로고
    • Structural insights into the functions of TBK1 in innate antimicrobial immunity
    • Shu, C., Sankaran, B., et al. Structural insights into the functions of TBK1 in innate antimicrobial immunity. Structure 21:7 (2013), 1137–1148.
    • (2013) Structure , vol.21 , Issue.7 , pp. 1137-1148
    • Shu, C.1    Sankaran, B.2
  • 24
    • 84873711885 scopus 로고    scopus 로고
    • Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway
    • Sun, L., Wu, J., et al. Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway. Science 339:6121 (2013), 786–791.
    • (2013) Science , vol.339 , Issue.6121 , pp. 786-791
    • Sun, L.1    Wu, J.2
  • 25
    • 84857937262 scopus 로고    scopus 로고
    • STING specifies IRF3 phosphorylation by TBK1 in the cytosolic DNA signaling pathway
    • Tanaka, Y., Chen, Z.J., STING specifies IRF3 phosphorylation by TBK1 in the cytosolic DNA signaling pathway. Sci. Signal., 5(214), 2012, ra20.
    • (2012) Sci. Signal. , vol.5 , Issue.214 , pp. ra20
    • Tanaka, Y.1    Chen, Z.J.2
  • 26
    • 84991541283 scopus 로고
    • South Hanley Rd, St. Louis, Missouri, 63144, USA
    • Tripos International, South Hanley Rd, St. Louis, Missouri, 63144, USA. 1699.
    • (1699)
  • 27
    • 2942532422 scopus 로고    scopus 로고
    • Development and testing of a general amber force field
    • Wang, J., Wolf, R.M., et al. Development and testing of a general amber force field. J. Comput. Chem. 25:9 (2004), 1157–1174.
    • (2004) J. Comput. Chem. , vol.25 , Issue.9 , pp. 1157-1174
    • Wang, J.1    Wolf, R.M.2
  • 28
    • 33748538349 scopus 로고    scopus 로고
    • Automatic atom type and bond type perception in molecular mechanical calculations
    • Wang, J., Wang, W., et al. Automatic atom type and bond type perception in molecular mechanical calculations. J. Mol. Graph. Model. 25:2 (2006), 247–260.
    • (2006) J. Mol. Graph. Model. , vol.25 , Issue.2 , pp. 247-260
    • Wang, J.1    Wang, W.2
  • 29
    • 0033613812 scopus 로고    scopus 로고
    • Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms
    • Word, J.M., Lovell, S.C., et al. Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms. J. Mol. Biol. 285:4 (1999), 1711–1733.
    • (1999) J. Mol. Biol. , vol.285 , Issue.4 , pp. 1711-1733
    • Word, J.M.1    Lovell, S.C.2
  • 30
    • 0033614004 scopus 로고    scopus 로고
    • Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation
    • Word, J.M., Lovell, S.C., et al. Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation. J. Mol. Biol. 285:4 (1999), 1735–1747.
    • (1999) J. Mol. Biol. , vol.285 , Issue.4 , pp. 1735-1747
    • Word, J.M.1    Lovell, S.C.2
  • 31
    • 0032481352 scopus 로고    scopus 로고
    • Direct triggering of the type I interferon system by virus infection: activation of a transcription factor complex containing IRF-3 and CBP/p300
    • Yoneyama, M., Suhara, W., et al. Direct triggering of the type I interferon system by virus infection: activation of a transcription factor complex containing IRF-3 and CBP/p300. EMBO J. 17:4 (1998), 1087–1095.
    • (1998) EMBO J. , vol.17 , Issue.4 , pp. 1087-1095
    • Yoneyama, M.1    Suhara, W.2
  • 32
    • 84880508067 scopus 로고    scopus 로고
    • Cyclic GMP-AMP containing mixed phosphodiester linkages is an endogenous high-affinity ligand for STING
    • Zhang, X., Shi, H., et al. Cyclic GMP-AMP containing mixed phosphodiester linkages is an endogenous high-affinity ligand for STING. Mol. Cell 51:2 (2013), 226–235.
    • (2013) Mol. Cell , vol.51 , Issue.2 , pp. 226-235
    • Zhang, X.1    Shi, H.2
  • 33
    • 53349168904 scopus 로고    scopus 로고
    • The adaptor protein MITA links virus-sensing receptors to IRF3 transcription factor activation
    • Zhong, B., Yang, Y., et al. The adaptor protein MITA links virus-sensing receptors to IRF3 transcription factor activation. Immunity 29:4 (2008), 538–550.
    • (2008) Immunity , vol.29 , Issue.4 , pp. 538-550
    • Zhong, B.1    Yang, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.