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Volumn 213, Issue 9, 2016, Pages 1410-1418

Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters

Author keywords

clusters; crossover; epidemiology; heterosexual; HIV; MSM; phylogenetics; phylogeny; PWID; subtypes

Indexed keywords

ARTICLE; CONTROLLED STUDY; DISEASE TRANSMISSION; HETEROSEXUALITY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 SUBTYPE A; HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 SUBTYPE A1; HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 SUBTYPE B; HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 SUBTYPE C; HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 SUBTYPE D; MALE; MEN WHO HAVE SEX WITH MEN; NAMED GROUPS OF PERSONS; PEOPLE WHO INJECT DRUG; PRIORITY JOURNAL; RISK FACTOR; UNITED KINGDOM; CLUSTER ANALYSIS; GENETICS; HIV INFECTIONS; HUMAN IMMUNODEFICIENCY VIRUS 1; INCIDENCE; MALE HOMOSEXUALITY; MOLECULAR EPIDEMIOLOGY; PHYLOGENY; STATISTICS AND NUMERICAL DATA; TRANSMISSION; VIROLOGY;

EID: 84971657258     PISSN: 00221899     EISSN: 15376613     Source Type: Journal    
DOI: 10.1093/infdis/jiv758     Document Type: Article
Times cited : (49)

References (30)
  • 1
    • 79952414942 scopus 로고    scopus 로고
    • Global trends in molecular epidemiology of HIV-1 during 2000-2007
    • Hemelaar J, Gouws E, Ghys PD, Osmanov S. Global trends in molecular epidemiology of HIV-1 during 2000-2007. AIDS 2011; 25:679-89.
    • (2011) AIDS , vol.25 , pp. 679-689
    • Hemelaar, J.1    Gouws, E.2    Ghys, P.D.3    Osmanov, S.4
  • 2
    • 15444367844 scopus 로고    scopus 로고
    • Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups
    • Hue S, Pillay D, Clewley JP, Pybus OG. Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups. Proc Natl Acad Sci U S A 2005; 102:4425-9.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 4425-4429
    • Hue, S.1    Pillay, D.2    Clewley, J.P.3    Pybus, O.G.4
  • 3
    • 84872127915 scopus 로고    scopus 로고
    • HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics
    • Abecasis AB,Wensing AM, Paraskevis D, et al. HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics. Retrovirology 2013; 10:7.
    • (2013) Retrovirology , vol.10 , pp. 7
    • Abecasis, A.B.1    Wensing, A.M.2    Paraskevis, D.3
  • 4
    • 84898739902 scopus 로고    scopus 로고
    • The increasing genetic diversity of HIV-1 in the UK, 2002-2010
    • The UK Collaborative Group on HIV Drug Resistance. the increasing genetic diversity of HIV-1 in the UK, 2002-2010. AIDS 2014; 28:773-80.
    • (2014) AIDS , vol.28 , pp. 773-780
  • 5
    • 0035306998 scopus 로고    scopus 로고
    • National surveillance of HIV-1 subtypes for England and Wales: Design, methods, and initial findings
    • Parry JV, Murphy G, Barlow KL, et al. National surveillance of HIV-1 subtypes for England and Wales: design, methods, and initial findings. J Acquir Immune Defic Syndr 2001; 26:381-8.
    • (2001) J Acquir Immune Defic Syndr , vol.26 , pp. 381-388
    • Parry, J.V.1    Murphy, G.2    Barlow, K.L.3
  • 6
    • 84874779902 scopus 로고    scopus 로고
    • Increasing HIV-1 non-B subtype primary infections in patients in France and effect of HIV subtypes on virological and immunological responses to combined antiretroviral therapy
    • Chaix ML, Seng R, Frange P, et al. Increasing HIV-1 non-B subtype primary infections in patients in France and effect of HIV subtypes on virological and immunological responses to combined antiretroviral therapy. Clin Infect Dis 2013; 56:880-7.
    • (2013) Clin Infect Dis , vol.56 , pp. 880-887
    • Chaix, M.L.1    Seng, R.2    Frange, P.3
  • 7
    • 10744223325 scopus 로고    scopus 로고
    • Rising prevalence of HIV-1 non-B subtypes in Belgium: 1983-2001
    • Snoeck J, Van LK, Hermans P, et al. Rising prevalence of HIV-1 non-B subtypes in Belgium: 1983-2001. J Acquir Immune Defic Syndr 2004; 35:279-85.
    • (2004) J Acquir Immune Defic Syndr , vol.35 , pp. 279-285
    • Snoeck, J.1    Van, L.K.2    Hermans, P.3
  • 8
    • 80052417284 scopus 로고    scopus 로고
    • The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland
    • von Wyl V, Kouyos RD, Yerly S, et al. the role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland. J Infect Dis 2011; 204:1095-103.
    • (2011) J Infect Dis , vol.204 , pp. 1095-1103
    • Von Wyl, V.1    Kouyos, R.D.2    Yerly, S.3
  • 9
    • 84880579305 scopus 로고    scopus 로고
    • Large-scale analysis of the prevalence and geographic distribution of HIV-1 non-B variants in the United States
    • Pyne MT, Hackett J Jr., Holzmayer V, Hillyard DR. Large-scale analysis of the prevalence and geographic distribution of HIV-1 non-B variants in the United States. J Clin Microbiol 2013; 51:2662-9.
    • (2013) J Clin Microbiol , vol.51 , pp. 2662-2669
    • Pyne, M.T.1    Hackett, J.2    Holzmayer, V.3    Hillyard, D.R.4
  • 13
    • 77957222650 scopus 로고    scopus 로고
    • Epidemiology of non-B clade forms of HIV-1 in men who have sex with men in the UK
    • Fox J, Castro H, Kaye S, McClure M, Weber JN, Fidler S. Epidemiology of non-B clade forms of HIV-1 in men who have sex with men in the UK. AIDS 2010; 24:2397-401.
    • (2010) AIDS , vol.24 , pp. 2397-2401
    • Fox, J.1    Castro, H.2    Kaye, S.3    McClure, M.4    Weber, J.N.5    Fidler, S.6
  • 14
    • 36348971793 scopus 로고    scopus 로고
    • Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1
    • Gifford RJ, de Oliveira T, Rambaut A, et al. Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1. J Virol 2007; 81:13050-6.
    • (2007) J Virol , vol.81 , pp. 13050-13056
    • Gifford, R.J.1    De Oliveira, T.2    Rambaut, A.3
  • 15
    • 33645297434 scopus 로고    scopus 로고
    • Evidence for onward transmission of HIV-1 non-B subtype strains in the United Kingdom
    • Aggarwal I, Smith M, Tatt ID, et al. Evidence for onward transmission of HIV-1 non-B subtype strains in the United Kingdom. J Acquir Immune Defic Syndr 2006; 41:201-9.
    • (2006) J Acquir Immune Defic Syndr , vol.41 , pp. 201-209
    • Aggarwal, I.1    Smith, M.2    Tatt, I.D.3
  • 16
    • 84866734669 scopus 로고    scopus 로고
    • A new method to assign country of HIV infection among heterosexuals born abroad and diagnosed with HIV
    • Rice BD, Elford J, Yin Z, Delpech VC. A new method to assign country of HIV infection among heterosexuals born abroad and diagnosed with HIV. AIDS 2012; 26:1961-6.
    • (2012) AIDS , vol.26 , pp. 1961-1966
    • Rice, B.D.1    Elford, J.2    Yin, Z.3    Delpech, V.C.4
  • 18
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006; 22:2688-90.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 19
    • 34548751162 scopus 로고    scopus 로고
    • ViroBLAST: A stand-alone BLAST web server for flexible queries of multiple databases and user's datasets
    • Deng W, Nickle DC, Learn GH, Maust B, Mullins JI. ViroBLAST: A stand-alone BLAST web server for flexible queries of multiple databases and user's datasets. Bioinformatics 2007; 23:2334-6.
    • (2007) Bioinformatics , vol.23 , pp. 2334-2336
    • Deng, W.1    Nickle, D.C.2    Learn, G.H.3    Maust, B.4    Mullins, J.I.5
  • 20
    • 77956638123 scopus 로고    scopus 로고
    • Longitudinal phylogenetic surveillance identifies distinct patterns of cluster dynamics
    • Ragonnet-Cronin M, Ofner-Agostini M, Merks H, et al. Longitudinal phylogenetic surveillance identifies distinct patterns of cluster dynamics. J Acquir Immune Defic Syndr 2010; 55:102-8.
    • (2010) J Acquir Immune Defic Syndr , vol.55 , pp. 102-108
    • Ragonnet-Cronin, M.1    Ofner-Agostini, M.2    Merks, H.3
  • 21
    • 78149306494 scopus 로고    scopus 로고
    • Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load
    • Alizon S, von Wyl V, Stadler T, et al. Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. PLoS Pathog 2010; 6: e1001123.
    • (2010) PLoS Pathog , vol.6 , pp. e1001123
    • Alizon, S.1    Von Wyl, V.2    Stadler, T.3
  • 22
    • 0030928378 scopus 로고    scopus 로고
    • Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    • Rambaut A, Grassly NC. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput Appl Biosci 1997; 13:235-8.
    • (1997) Comput Appl Biosci , vol.13 , pp. 235-238
    • Rambaut, A.1    Grassly, N.C.2
  • 24
    • 84908340141 scopus 로고    scopus 로고
    • Characteristics of patients recently infected with HIV-1 non-B subtypes in France: A nested study within the mandatory notification system for new HIV diagnoses
    • Brand D, Moreau A, Cazein F, et al. Characteristics of patients recently infected with HIV-1 non-B subtypes in France: A nested study within the mandatory notification system for new HIV diagnoses. J Clin Microbiol 2014; 52:4010-6.
    • (2014) J Clin Microbiol , vol.52 , pp. 4010-4016
    • Brand, D.1    Moreau, A.2    Cazein, F.3
  • 25
    • 84890424472 scopus 로고    scopus 로고
    • Current status of HIV-1 diversity and drug resistance monitoring in the former USSR
    • Bobkova M. Current status of HIV-1 diversity and drug resistance monitoring in the former USSR. AIDS Rev 2013; 15:204-12.
    • (2013) AIDS Rev , vol.15 , pp. 204-212
    • Bobkova, M.1
  • 26
    • 84924068498 scopus 로고    scopus 로고
    • Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions
    • Hue S, Brown AE, Ragonnet-Cronin M, et al. Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions. AIDS 2014; 28:1967-75.
    • (2014) AIDS , vol.28 , pp. 1967-1975
    • Hue, S.1    Brown, A.E.2    Ragonnet-Cronin, M.3
  • 28
    • 80052409994 scopus 로고    scopus 로고
    • Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec
    • Brenner BG, Roger M, Stephens D, et al. Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec. J Infect Dis 2011; 204:1115-9.
    • (2011) J Infect Dis , vol.204 , pp. 1115-1119
    • Brenner, B.G.1    Roger, M.2    Stephens, D.3
  • 29
    • 84864075429 scopus 로고    scopus 로고
    • Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection
    • Volz EM, Koopman JS, Ward MJ, Brown AL, Frost SD. Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection. PLoS Comput Biol 2012; 8:e1002552.
    • (2012) PLoS Comput Biol , vol.8 , pp. e1002552
    • Volz, E.M.1    Koopman, J.S.2    Ward, M.J.3    Brown, A.L.4    Frost, S.D.5
  • 30
    • 84899033140 scopus 로고    scopus 로고
    • The role of viral introductions in sustaining community-based HIV epidemics in rural Uganda: Evidence from spatial clustering, phylogenetics, and egocentric transmission models
    • Grabowski MK, Lessler J, Redd AD, et al. the role of viral introductions in sustaining community-based HIV epidemics in rural Uganda: evidence from spatial clustering, phylogenetics, and egocentric transmission models. PLoS Med 2014; 11:e1001610.
    • (2014) PLoS Med , vol.11 , pp. e1001610
    • Grabowski, M.K.1    Lessler, J.2    Redd, A.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.