-
1
-
-
84861382309
-
Phylogeography and population dynamics of dengue viruses in the Americas
-
Allicock O.M., Lemey P., Tatem A.J., Pybus O.G., Bennett S.N., Mueller C.V.F., Suchard M.A., Foster J.E., Rambaut A., Carrington B.A. Phylogeography and population dynamics of dengue viruses in the Americas. Mol. Biol. Evol. 2012, 29(6):1533-1534.
-
(2012)
Mol. Biol. Evol.
, vol.29
, Issue.6
, pp. 1533-1534
-
-
Allicock, O.M.1
Lemey, P.2
Tatem, A.J.3
Pybus, O.G.4
Bennett, S.N.5
Mueller, C.V.F.6
Suchard, M.A.7
Foster, J.E.8
Rambaut, A.9
Carrington, B.A.10
-
2
-
-
68949116657
-
Genetic diversity of the E protein of dengue type 3 virus
-
Amarilla A.A., Almeida F.T., Jorge D.M., Alfonso H.L., Castro-Jorge L.A., Nogueira N.A., Figueiredo L.T., Aquino V.H. Genetic diversity of the E protein of dengue type 3 virus. Virol. J. 2009, 6:113.
-
(2009)
Virol. J.
, vol.6
, pp. 113
-
-
Amarilla, A.A.1
Almeida, F.T.2
Jorge, D.M.3
Alfonso, H.L.4
Castro-Jorge, L.A.5
Nogueira, N.A.6
Figueiredo, L.T.7
Aquino, V.H.8
-
3
-
-
84866997225
-
Molecular characterisation of dengue virus type 1 reveals lineage replacement during circulation in Brazilian territory
-
Carneiro A.R., Cruz A.C.R., Vallinoto M., Melo D.V., Ramos R.T.J., Medeiros D.B.A., Silva E.V.P., Vasconcelos P.F.C. Molecular characterisation of dengue virus type 1 reveals lineage replacement during circulation in Brazilian territory. Mem. Inst. Oswaldo Cruz 2012, 107:805-812.
-
(2012)
Mem. Inst. Oswaldo Cruz
, vol.107
, pp. 805-812
-
-
Carneiro, A.R.1
Cruz, A.C.R.2
Vallinoto, M.3
Melo, D.V.4
Ramos, R.T.J.5
Medeiros, D.B.A.6
Silva, E.V.P.7
Vasconcelos, P.F.C.8
-
4
-
-
77957113923
-
Evolution of dengue virus in Mexico is characterized by frequent lineage replacement
-
Carrillo-Valenzo E., Danis-Lozano R., Velasco-Hernández J.X., Sánchez-Burgos G., Alpuche C., López I., Rosales C., Baronti C., Lamballerie X., Holmes E.C., Ramos-Castaneda J. Evolution of dengue virus in Mexico is characterized by frequent lineage replacement. Arch. Virol. 2010, 155:1401-1412.
-
(2010)
Arch. Virol.
, vol.155
, pp. 1401-1412
-
-
Carrillo-Valenzo, E.1
Danis-Lozano, R.2
Velasco-Hernández, J.X.3
Sánchez-Burgos, G.4
Alpuche, C.5
López, I.6
Rosales, C.7
Baronti, C.8
Lamballerie, X.9
Holmes, E.C.10
Ramos-Castaneda, J.11
-
5
-
-
0025116324
-
Flavivirus genome organization, expression, and replication
-
Chambers T.J., Hahn C.S., Galler R., Rice C.M. Flavivirus genome organization, expression, and replication. Annu. Rev. Microbiol. 1990, 44:649-688.
-
(1990)
Annu. Rev. Microbiol.
, vol.44
, pp. 649-688
-
-
Chambers, T.J.1
Hahn, C.S.2
Galler, R.3
Rice, C.M.4
-
6
-
-
1342288004
-
The Jalview Java alignment editor
-
Clamp M., Cuff J., Searle S.M., Barton G.J. The Jalview Java alignment editor. Bioinformatics 2004, 20:426-427.
-
(2004)
Bioinformatics
, vol.20
, pp. 426-427
-
-
Clamp, M.1
Cuff, J.2
Searle, S.M.3
Barton, G.J.4
-
7
-
-
11144246888
-
Selection for virulent dengue viruses occurs in humans and mosquitoes
-
Cologna R., Armstrong P.M., Rico-Hesse R. Selection for virulent dengue viruses occurs in humans and mosquitoes. J. Virol. 2005, 79:853-859.
-
(2005)
J. Virol.
, vol.79
, pp. 853-859
-
-
Cologna, R.1
Armstrong, P.M.2
Rico-Hesse, R.3
-
8
-
-
84857654294
-
Comparative evolutionary epidemiology of dengue virus serotypes
-
Costa R.L., Voloch C.M., Schrago C.G. Comparative evolutionary epidemiology of dengue virus serotypes. Infect. Genet. Evol. 2012, 12(2):309-314.
-
(2012)
Infect. Genet. Evol.
, vol.12
, Issue.2
, pp. 309-314
-
-
Costa, R.L.1
Voloch, C.M.2
Schrago, C.G.3
-
9
-
-
84864453108
-
JModelTest2: more models, new heuristics and parallel computing
-
Darriba D., Taboada G.L., Doallo R., Posada D. jModelTest2: more models, new heuristics and parallel computing. Nat. Methods 2012, 30:772.
-
(2012)
Nat. Methods
, vol.30
, pp. 772
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
10
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
11
-
-
84868473262
-
Population dynamics of DENV-1 genotype V in Brazil is characterized by co-circulation and strain/lineage replacement
-
Drumond B.P., Mondini A., Schmidt D.J., Bosch I., Nogueira M.L. Population dynamics of DENV-1 genotype V in Brazil is characterized by co-circulation and strain/lineage replacement. Arch. Virol. 2012, 157:2061-2073.
-
(2012)
Arch. Virol.
, vol.157
, pp. 2061-2073
-
-
Drumond, B.P.1
Mondini, A.2
Schmidt, D.J.3
Bosch, I.4
Nogueira, M.L.5
-
12
-
-
84875331850
-
Circulation of different lineages of dengue virus 2, genotype American/Asian in Brazil: dynamics and molecular and phylogenetic characterization
-
Drumond B.P., Mondini A., Schmidt D.J., Moraes R.V.B., Bosh I., Nogueira M.L. Circulation of different lineages of dengue virus 2, genotype American/Asian in Brazil: dynamics and molecular and phylogenetic characterization. PLoS One 2013, 8.
-
(2013)
PLoS One
, vol.8
-
-
Drumond, B.P.1
Mondini, A.2
Schmidt, D.J.3
Moraes, R.V.B.4
Bosh, I.5
Nogueira, M.L.6
-
13
-
-
84912060285
-
Dengue virus 2 American-Asian genotype identified during the 2006/2007 outbreak in Piauí, Brazil reveals a Caribbean route of introduction and dissemination of dengue virus in Brazil
-
Figueiredo L.B., Sakamoto T., Coelho L.F.L., Rocha E.S.O., Cota M.M.G., Ferreira G.P., Oliveira J.G., Kroon E.G. Dengue virus 2 American-Asian genotype identified during the 2006/2007 outbreak in Piauí, Brazil reveals a Caribbean route of introduction and dissemination of dengue virus in Brazil. PLoS One 2014, 9.
-
(2014)
PLoS One
, vol.9
-
-
Figueiredo, L.B.1
Sakamoto, T.2
Coelho, L.F.L.3
Rocha, E.S.O.4
Cota, M.M.G.5
Ferreira, G.P.6
Oliveira, J.G.7
Kroon, E.G.8
-
14
-
-
2942564075
-
Phylogeography and molecular evolution of dengue 2 in the Caribbean basin, 1981-2000
-
Foster J.E., Bennett S.N., Carrington C.V.F., Vaughan H., McMillan W.O. Phylogeography and molecular evolution of dengue 2 in the Caribbean basin, 1981-2000. Virology 2004, 324:48-59.
-
(2004)
Virology
, vol.324
, pp. 48-59
-
-
Foster, J.E.1
Bennett, S.N.2
Carrington, C.V.F.3
Vaughan, H.4
McMillan, W.O.5
-
15
-
-
0036924774
-
Diversity and evolution of the envelope gene of dengue virus type 1
-
Goncalvez A.P., Escalante A.A., Pujol F.H., Ludert J.E., Tovar D., Salas R.A., Liprandi F. Diversity and evolution of the envelope gene of dengue virus type 1. Virology 2002, 303:110-119.
-
(2002)
Virology
, vol.303
, pp. 110-119
-
-
Goncalvez, A.P.1
Escalante, A.A.2
Pujol, F.H.3
Ludert, J.E.4
Tovar, D.5
Salas, R.A.6
Liprandi, F.7
-
16
-
-
0031823546
-
Dengue and dengue hemorrhagic fever
-
Gubler D.J. Dengue and dengue hemorrhagic fever. Clin. Microbiol. Rev. 1998, 11(3):480-496.
-
(1998)
Clin. Microbiol. Rev.
, vol.11
, Issue.3
, pp. 480-496
-
-
Gubler, D.J.1
-
17
-
-
0037404062
-
The origin, emergence and evolutionary genetics of dengue virus
-
Holmes E.C., Twiddy S.S. The origin, emergence and evolutionary genetics of dengue virus. Infect. Genet. Evol. 2003, 3:19-28.
-
(2003)
Infect. Genet. Evol.
, vol.3
, pp. 19-28
-
-
Holmes, E.C.1
Twiddy, S.S.2
-
18
-
-
56249097545
-
Molecular genotyping of dengue viruses by phylogenetic analysis of the sequences of individual genes
-
Klungthong C., Putnak R., Mammen M.P., Li T., Zhang C. Molecular genotyping of dengue viruses by phylogenetic analysis of the sequences of individual genes. J. Virol. Methods 2008, 154:175-181.
-
(2008)
J. Virol. Methods
, vol.154
, pp. 175-181
-
-
Klungthong, C.1
Putnak, R.2
Mammen, M.P.3
Li, T.4
Zhang, C.5
-
19
-
-
64649091589
-
Phylogenetic studies reveal existence of multiple lineages of a single genotype of DENV-1 (genotype III) in India during 1956-2007
-
Kukreti H., Dash P.K., Parida M., Chaudhary A., Saxena P., Rautela R.S., Mittal V., Chhabra M., Bhattacharya D., Lal S., Rao P.V.L., Rai A. Phylogenetic studies reveal existence of multiple lineages of a single genotype of DENV-1 (genotype III) in India during 1956-2007. Virol. J. 2009, 6:1-10.
-
(2009)
Virol. J.
, vol.6
, pp. 1-10
-
-
Kukreti, H.1
Dash, P.K.2
Parida, M.3
Chaudhary, A.4
Saxena, P.5
Rautela, R.S.6
Mittal, V.7
Chhabra, M.8
Bhattacharya, D.9
Lal, S.10
Rao, P.V.L.11
Rai, A.12
-
20
-
-
0026580422
-
Rapid detection and typing of dengue viruses from clinical samples by using reverse transcriptase-polymerase chain reaction
-
Lanciotti R.S., Calisher C.H., Gubler D.J., Chang G.J., Vorndam A.V. Rapid detection and typing of dengue viruses from clinical samples by using reverse transcriptase-polymerase chain reaction. J. Clin. Microbiol. 1992, 30:545-551.
-
(1992)
J. Clin. Microbiol.
, vol.30
, pp. 545-551
-
-
Lanciotti, R.S.1
Calisher, C.H.2
Gubler, D.J.3
Chang, G.J.4
Vorndam, A.V.5
-
21
-
-
65649117685
-
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
-
Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
22
-
-
77956486107
-
Phylogenetic history demonstrates two different lineages of dengue type 1 virus in Colombia
-
Mendez J.A., Usme-Ciro J.A., Domingo C., Rey G.J., Sanchez J.A., Tenório A., Gallego-Gomez J.C. Phylogenetic history demonstrates two different lineages of dengue type 1 virus in Colombia. Virol. J. 2010, 7:226.
-
(2010)
Virol. J.
, vol.7
, pp. 226
-
-
Mendez, J.A.1
Usme-Ciro, J.A.2
Domingo, C.3
Rey, G.J.4
Sanchez, J.A.5
Tenório, A.6
Gallego-Gomez, J.C.7
-
23
-
-
84896705940
-
Global spread of dengue virus types: mapping the 70 year history
-
Messina J.P., Brady O.J., Scott T.W., Zou C., Pigott D.M., Duda K.A., Bhatt S., Katzelnick L., Howes R.E., Battle K.E., Simmons C.P., Hay S.I. Global spread of dengue virus types: mapping the 70 year history. Trends Microbiol. 2014, 22:138-146.
-
(2014)
Trends Microbiol.
, vol.22
, pp. 138-146
-
-
Messina, J.P.1
Brady, O.J.2
Scott, T.W.3
Zou, C.4
Pigott, D.M.5
Duda, K.A.6
Bhatt, S.7
Katzelnick, L.8
Howes, R.E.9
Battle, K.E.10
Simmons, C.P.11
Hay, S.I.12
-
24
-
-
84863414173
-
Imported malaria and dengue fever in returned travelers in Japan from 2005 to 2010
-
Mizuno Y., Kato Y., Kano S., Takasaki T. Imported malaria and dengue fever in returned travelers in Japan from 2005 to 2010. Travel Med. Infect. Dis. 2012, 10:86-91.
-
(2012)
Travel Med. Infect. Dis.
, vol.10
, pp. 86-91
-
-
Mizuno, Y.1
Kato, Y.2
Kano, S.3
Takasaki, T.4
-
25
-
-
84901279781
-
Air travel is associated with intracontinental spread of dengue virus serotypes 1-3 in Brazil
-
Nunes M.R.T., Palacios G., Faria N.R., Sousa E.C., Pantoja J.A., Rodrigues S.G., Carvalho V.L., Medeiros D.B.A., Savji N., Baele G., Suchard M.A., Lemey P., Vasconcelos P.F.C., Lipkin W.I. Air travel is associated with intracontinental spread of dengue virus serotypes 1-3 in Brazil. PLoS Negl. Trop. Dis. 2014, 8.
-
(2014)
PLoS Negl. Trop. Dis.
, vol.8
-
-
Nunes, M.R.T.1
Palacios, G.2
Faria, N.R.3
Sousa, E.C.4
Pantoja, J.A.5
Rodrigues, S.G.6
Carvalho, V.L.7
Medeiros, D.B.A.8
Savji, N.9
Baele, G.10
Suchard, M.A.11
Lemey, P.12
Vasconcelos, P.F.C.13
Lipkin, W.I.14
-
27
-
-
79959834106
-
Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission
-
Raghwani J., Rambaut A., Holmes E.C., Hang V.T., Hien T.T., Farrar J., Wills B., Lennon N.J., Birren B.W., Henn M.R., Simmons C.P. Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission. PLoS Pathog. 2011, 7.
-
(2011)
PLoS Pathog.
, vol.7
-
-
Raghwani, J.1
Rambaut, A.2
Holmes, E.C.3
Hang, V.T.4
Hien, T.T.5
Farrar, J.6
Wills, B.7
Lennon, N.J.8
Birren, B.W.9
Henn, M.R.10
Simmons, C.P.11
-
28
-
-
0025037999
-
Molecular evolution and distribution of dengue viruses type 1 and 2 in nature
-
Rico-Hesse R. Molecular evolution and distribution of dengue viruses type 1 and 2 in nature. Virology 1990, 174:479-493.
-
(1990)
Virology
, vol.174
, pp. 479-493
-
-
Rico-Hesse, R.1
-
29
-
-
79960996366
-
First report of multiple lineages of dengue viruses type 1 in Rio de Janeiro, Brazil
-
Santos F.B., Nogueira F.B., Castro M.G., Nunes P.C.G., Filippis A.M.B., Faria N.R.C., Simões J.B.S., Sampaio S.A., Santos C.R., Nogueira R.M.R. First report of multiple lineages of dengue viruses type 1 in Rio de Janeiro, Brazil. Virol. J. 2011, 8:387.
-
(2011)
Virol. J.
, vol.8
, pp. 387
-
-
Santos, F.B.1
Nogueira, F.B.2
Castro, M.G.3
Nunes, P.C.G.4
Filippis, A.M.B.5
Faria, N.R.C.6
Simões, J.B.S.7
Sampaio, S.A.8
Santos, C.R.9
Nogueira, R.M.R.10
-
30
-
-
84969640323
-
-
SES-GO Dengue cases technical report Available from. http://www.sgc.goias.gov.br/upload/links/arq_429_RelatorioABoletimASemanalASE-52.pdf.
-
Dengue cases technical report
-
-
-
31
-
-
84890330527
-
MEGA6: molecular evolutionary genetics analysis version 6.0
-
Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 2013, 30:2725-2729.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
32
-
-
0031574072
-
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
33
-
-
84908583722
-
Dengue virus 1 in Buenos Aires from 1999 to 2010: towards local spread
-
Tittarelli E., Mistchenko A.S., Barrero P.R. Dengue virus 1 in Buenos Aires from 1999 to 2010: towards local spread. PLoS One 2014, 9.
-
(2014)
PLoS One
, vol.9
-
-
Tittarelli, E.1
Mistchenko, A.S.2
Barrero, P.R.3
-
34
-
-
0036302085
-
Phylogenetic relationships and differential selection pressures among genotypes of dengue-2 virus
-
Twiddy S.S., Farrar J.J., Chau N.V., Wills B., Gould E.A., Gritsun T., Lloyd G., Holmes E.C. Phylogenetic relationships and differential selection pressures among genotypes of dengue-2 virus. Virology 2002, 298:63-72.
-
(2002)
Virology
, vol.298
, pp. 63-72
-
-
Twiddy, S.S.1
Farrar, J.J.2
Chau, N.V.3
Wills, B.4
Gould, E.A.5
Gritsun, T.6
Lloyd, G.7
Holmes, E.C.8
-
35
-
-
84877637295
-
Worldwide spread of dengue virus type 1
-
Villabona-Arenas C.J., Zanotto P.M.d.A. Worldwide spread of dengue virus type 1. PLoS One 2013, 8(5).
-
(2013)
PLoS One
, vol.8
, Issue.5
-
-
Villabona-Arenas, C.J.1
Zanotto, P.2
-
36
-
-
68749092166
-
Molecular evolution of dengue viruses: contributions of phylogenetics to understanding the history and epidemiology of the preeminent arboviral disease
-
Weaver S.C., Vasilakis N. Molecular evolution of dengue viruses: contributions of phylogenetics to understanding the history and epidemiology of the preeminent arboviral disease. Infect. Genet. Evol. 2009, 9:523-540.
-
(2009)
Infect. Genet. Evol.
, vol.9
, pp. 523-540
-
-
Weaver, S.C.1
Vasilakis, N.2
-
38
-
-
0036395194
-
Extinction and rapid emergence of strains of dengue 3 virus during an interepidemic period
-
Wittke V., Robb T.E., Thu H.M., Nisalak A., Nimmannitya S., Kalayanrooj S., Vaughn D.W., Endy T.P., Holmes E.C., Aaskov J.G. Extinction and rapid emergence of strains of dengue 3 virus during an interepidemic period. Virology 2002, 301:148-156.
-
(2002)
Virology
, vol.301
, pp. 148-156
-
-
Wittke, V.1
Robb, T.E.2
Thu, H.M.3
Nisalak, A.4
Nimmannitya, S.5
Kalayanrooj, S.6
Vaughn, D.W.7
Endy, T.P.8
Holmes, E.C.9
Aaskov, J.G.10
-
39
-
-
29744466295
-
Clade replacements in dengue virus serotypes 1 and 3 are associated with changing serotype prevalence
-
Zhang C.L., Mammen M.P., Chinnawirotpisan P., Klungthong C., Rodpradit P., Monkongdee P., Nimmannitya S., Kalayanarooj S., Holmes E.C. Clade replacements in dengue virus serotypes 1 and 3 are associated with changing serotype prevalence. J. Virol. 2005, 79:15123-15130.
-
(2005)
J. Virol.
, vol.79
, pp. 15123-15130
-
-
Zhang, C.L.1
Mammen, M.P.2
Chinnawirotpisan, P.3
Klungthong, C.4
Rodpradit, P.5
Monkongdee, P.6
Nimmannitya, S.7
Kalayanarooj, S.8
Holmes, E.C.9
-
40
-
-
57649136837
-
Molecular characterization of the E gene of dengue virus type 1 isolated in Guangdong province, China, in 2006
-
Zheng K., Zhou H.Q., Yan J., Ke C.W., Maeda A., Maeda J. Molecular characterization of the E gene of dengue virus type 1 isolated in Guangdong province, China, in 2006. Epidemiol. Infect. 2006, 137:73-78.
-
(2006)
Epidemiol. Infect.
, vol.137
, pp. 73-78
-
-
Zheng, K.1
Zhou, H.Q.2
Yan, J.3
Ke, C.W.4
Maeda, A.5
Maeda, J.6
|