메뉴 건너뛰기




Volumn 303, Issue 1, 2002, Pages 110-119

Diversity and evolution of the envelope gene of dengue virus type 1

Author keywords

Dengue; Dengue virus; Envelope; Genetic diversity; Molecular clock; Molecular epidemiology; Molecular evolution; Nucleotide substitutions

Indexed keywords

NUCLEOTIDE;

EID: 0036924774     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.2002.1686     Document Type: Article
Times cited : (182)

References (42)
  • 1
    • 0023845514 scopus 로고
    • A prospective study of dengue infection in Bangkok
    • Burke, D. S., Nisalak, A., and Johnson, D. E. (1988). A prospective study of dengue infection in Bangkok. Am. J. Trop. Med. Hyg. 38, 172-180.
    • (1988) Am. J. Trop. Med. Hyg. , vol.38 , pp. 172-180
    • Burke, D.S.1    Nisalak, A.2    Johnson, D.E.3
  • 2
    • 0024340421 scopus 로고
    • Genetic relatedness among structural protein genes of dengue 1 virus strains
    • Chu, M. C., O'Rourke, E. J., and Trent, D. W. (1989). Genetic relatedness among structural protein genes of dengue 1 virus strains. J. Gen. Virol. 70, 1701-1712.
    • (1989) J. Gen. Virol. , vol.70 , pp. 1701-1712
    • Chu, M.C.1    O'Rourke, E.J.2    Trent, D.W.3
  • 4
  • 5
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu, Y. X., and Li, W. H. (1993). Statistical tests of neutrality of mutations. Genetics 133, 693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 6
    • 0025678383 scopus 로고
    • Molecular clock of viral evolution, and the neutral theory
    • Gojobori, T., Moriyama, E. N., and Kimura, M. (1990). Molecular clock of viral evolution, and the neutral theory. Proc. Natl. Acad. Sci. USA 87, 10015-10018.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 10015-10018
    • Gojobori, T.1    Moriyama, E.N.2    Kimura, M.3
  • 7
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • Goldman, N., and Yang, Z. (1994). A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11, 725-736.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 8
    • 0002540391 scopus 로고    scopus 로고
    • Dengue and dengue hemorrhagic fever: Its history and resurgence as a global public health problem
    • D. J. Gubler and G. Kuno, Eds. CAB International, New York
    • Gubler, D. J. (1997). Dengue and dengue hemorrhagic fever: Its history and resurgence as a global public health problem. In "Dengue and Dengue Hemorrhagic Fever" (D. J. Gubler and G. Kuno, Eds.), pp. 1-22. CAB International, New York.
    • (1997) Dengue and Dengue Hemorrhagic Fever , pp. 1-22
    • Gubler, D.J.1
  • 9
    • 0023818748 scopus 로고
    • Pathogenesis of dengue: Challenges to molecular biology
    • Halstead, S. B. (1988). Pathogenesis of dengue: Challenges to molecular biology. Science 239, 476-481.
    • (1988) Science , vol.239 , pp. 476-481
    • Halstead, S.B.1
  • 10
    • 0035148533 scopus 로고    scopus 로고
    • Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates
    • Haydon, D. T., Bastos, A. D., Knowles, N. J., and Samuel, A. R. (2001). Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates. Genetics 157, 7-15.
    • (2001) Genetics , vol.157 , pp. 7-15
    • Haydon, D.T.1    Bastos, A.D.2    Knowles, N.J.3    Samuel, A.R.4
  • 11
    • 77957063593 scopus 로고    scopus 로고
    • The emergence of dengue: Past, present, and future
    • Academic Press, San Diego
    • Holmes, E. C., Bartley, L., and Garnett, G. P. (1998). The emergence of dengue: Past, present, and future. In "Emerging Infections." pp. 301-304. Academic Press, San Diego.
    • (1998) Emerging Infections , pp. 301-304
    • Holmes, E.C.1    Bartley, L.2    Garnett, G.P.3
  • 12
    • 0033021298 scopus 로고    scopus 로고
    • Phylogenetic evidence for recombination in dengue virus
    • Holmes, E. C., Worobey, M., and Rambaut, A. (1999). Phylogenetic evidence for recombination in dengue virus. Mol. Biol. Evol. 16, 405-409.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 405-409
    • Holmes, E.C.1    Worobey, M.2    Rambaut, A.3
  • 13
    • 0028048620 scopus 로고
    • Statistical analysis of nucleotide sequences of the hemagglutinin gene of human influenza A viruses
    • Ina, Y., and Gojobori, T. (1994). Statistical analysis of nucleotide sequences of the hemagglutinin gene of human influenza A viruses. Proc. Natl. Acad. Sci. USA 91, 8388-8392.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 8388-8392
    • Ina, Y.1    Gojobori, T.2
  • 16
    • 0030886723 scopus 로고    scopus 로고
    • Molecular evolution and phylogeny of dengue-4 viruses
    • Lanciotti, R. S., Gubler, D. J., and Trent, D. W. (1997). Molecular evolution and phylogeny of dengue-4 viruses. J. Gen. Virol. 78, 2279-2286.
    • (1997) J. Gen. Virol. , vol.78 , pp. 2279-2286
    • Lanciotti, R.S.1    Gubler, D.J.2    Trent, D.W.3
  • 17
    • 0028097718 scopus 로고
    • Molecular evolution and epidemiology of dengue-3 viruses
    • Lanciotti, R. S., Lewis, J. G., Gubler, D. J., and Trent, D. W. (1994). Molecular evolution and epidemiology of dengue-3 viruses. J. Gen. Virol. 75, 65-75.
    • (1994) J. Gen. Virol. , vol.75 , pp. 65-75
    • Lanciotti, R.S.1    Lewis, J.G.2    Gubler, D.J.3    Trent, D.W.4
  • 20
    • 0028355518 scopus 로고
    • Dengue: The risk to developed and developing countries
    • Monath, T. P. (1994). Dengue: The risk to developed and developing countries. Proc. Natl. Acad. Sci. USA 91, 2395-2400.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 2395-2400
    • Monath, T.P.1
  • 21
    • 0001925194 scopus 로고    scopus 로고
    • Flaviviruses
    • (B. N. Fields, D. M. Knipe, and P. M. Howley, Eds.), Lippincott-Raven, Philadelphia, New York
    • Monath, T. P., and Heinz, F. X. (1996). Flaviviruses. pp. 961-1034. In "Fields Virology" (B. N. Fields, D. M. Knipe, and P. M. Howley, Eds.), Lippincott-Raven, Philadelphia, New York.
    • (1996) Fields Virology , pp. 961-1034
    • Monath, T.P.1    Heinz, F.X.2
  • 22
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page, R. D. M. (1996). TREEVIEW: An application to display phylogenetic trees on personal computers. Comput. App. Biosci. 12, 357-358.
    • (1996) Comput. App. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 23
    • 0024796459 scopus 로고
    • Dengue in the Americas. 1980-1987
    • Pinheiro, F. P. (1989). Dengue in the Americas. 1980-1987. Epidemiol. Bull. 10, 1-8.
    • (1989) Epidemiol. Bull. , vol.10 , pp. 1-8
    • Pinheiro, F.P.1
  • 24
    • 0031418454 scopus 로고    scopus 로고
    • Global situation of dengue and dengue haemorrhagic fever and its emergence in the Americas
    • Pinheiro, F. P., and Corber, S. J. (1997). Global situation of dengue and dengue haemorrhagic fever and its emergence in the Americas. World Health Stat. Q. 50, 161-169.
    • (1997) World Health Stat. Q. , vol.50 , pp. 161-169
    • Pinheiro, F.P.1    Corber, S.J.2
  • 25
    • 0034044313 scopus 로고    scopus 로고
    • Estimating the rate of molecular evolution: Incorporating non-contemporaneous sequences into maximum likelihood phylogenies
    • Rambaut, A. (2000). Estimating the rate of molecular evolution: Incorporating non-contemporaneous sequences into maximum likelihood phylogenies. Bioinformatics 16, 395-399.
    • (2000) Bioinformatics , vol.16 , pp. 395-399
    • Rambaut, A.1
  • 26
    • 0029014434 scopus 로고
    • The envelope glycoprotein from tick-borne encephalitis virus at 2 Å resolution
    • Rey, F. A., Heinz, F. X., Mandl, C., Kunz, C., and Harrison, S. C. (1995). The envelope glycoprotein from tick-borne encephalitis virus at 2 Å resolution. Nature 375, 291-298.
    • (1995) Nature , vol.375 , pp. 291-298
    • Rey, F.A.1    Heinz, F.X.2    Mandl, C.3    Kunz, C.4    Harrison, S.C.5
  • 27
    • 0025037999 scopus 로고
    • Molecular evolution and distribution of dengue viruses type 1 and 2 in nature
    • Rico-Hesse, R. (1990). Molecular evolution and distribution of dengue viruses type 1 and 2 in nature. Virology 174, 479-493.
    • (1990) Virology , vol.174 , pp. 479-493
    • Rico-Hesse, R.1
  • 29
    • 0017685896 scopus 로고
    • The Emperor's New Clothes revisited, or reflections on the pathogenesis of dengue hemorrhagic fever
    • Rosen, L. (1977). The Emperor's New Clothes revisited, or reflections on the pathogenesis of dengue hemorrhagic fever. Am. J. Trop. Med. Hyg. 26, 337-343.
    • (1977) Am. J. Trop. Med. Hyg. , vol.26 , pp. 337-343
    • Rosen, L.1
  • 30
    • 0000416584 scopus 로고    scopus 로고
    • Viral pathogenesis of dengue infections
    • D.J. Gubler and G. Kuno, Eds. CAB International, New York
    • Rothman, A. L. (1997). Viral pathogenesis of dengue infections. In "Dengue and Dengue Hemorrhagic Fever" (D.J. Gubler and G. Kuno, Eds.), pp. 245-271. CAB International, New York.
    • (1997) Dengue and Dengue Hemorrhagic Fever , pp. 245-271
    • Rothman, A.L.1
  • 32
    • 0000375964 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 6, 514-525.
    • (1987) Mol. Biol. Evol. , vol.6 , pp. 514-525
    • Saitou, N.1    Nei, M.2
  • 33
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 34
    • 0027968068 scopus 로고
    • Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994). Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 36
    • 0001219233 scopus 로고
    • The molecular epidemiology of dengue viruses: Genetic variation and microevolution
    • Trent, D. W., Manske, C. L., Fox, G. E., Chu, M. C., Kliks, S. C., and Monath, T. P. (1990). The molecular epidemiology of dengue viruses: Genetic variation and microevolution. Appl. Virol. Res. 2, 293-315.
    • (1990) Appl. Virol. Res. , vol.2 , pp. 293-315
    • Trent, D.W.1    Manske, C.L.2    Fox, G.E.3    Chu, M.C.4    Kliks, S.C.5    Monath, T.P.6
  • 37
    • 0034054286 scopus 로고    scopus 로고
    • Evolutionary relationships of endemic/epidemic and sylvatic dengue viruses
    • Wang, E., Ni, H., Xu, R., Barret, A. D. T., Watowich, S. J., Gubler, D. J., and Weaver, S. C. (2000). Evolutionary relationships of endemic/epidemic and sylvatic dengue viruses. J. Virol. 74, 3227-3234.
    • (2000) J. Virol. , vol.74 , pp. 3227-3234
    • Wang, E.1    Ni, H.2    Xu, R.3    Barret, A.D.T.4    Watowich, S.J.5    Gubler, D.J.6    Weaver, S.C.7
  • 38
    • 0033598597 scopus 로고    scopus 로고
    • Failure of secondary infection with American genotype dengue 2 to cause dengue hemorrhagic fever
    • Watts, D. M., Porter, K. R., Putvatana, P., Vasquez, B., Calampa, C., Hayes, C. G., and Halstead, S. B. (1999). Failure of secondary infection with American genotype dengue 2 to cause dengue hemorrhagic fever. Lancet 354, 1431-1434.
    • (1999) Lancet , vol.354 , pp. 1431-1434
    • Watts, D.M.1    Porter, K.R.2    Putvatana, P.3    Vasquez, B.4    Calampa, C.5    Hayes, C.G.6    Halstead, S.B.7
  • 39
    • 0033594983 scopus 로고    scopus 로고
    • Widespread intra-serotype recombination in natural populations of dengue virus
    • Worobey, M., Rambaut, A., and Holmes, E. C. (1999). Widespread intra-serotype recombination in natural populations of dengue virus. Proc. Natl. Acad. Sci. USA 96, 7352-7357.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 7352-7357
    • Worobey, M.1    Rambaut, A.2    Holmes, E.C.3
  • 40
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang, Z. (1997). PAML: A program package for phylogenetic analysis by maximum likelihood. CABIOS 13, 555-556.
    • (1997) CABIOS , vol.13 , pp. 555-556
    • Yang, Z.1
  • 41
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang, Z., Nielsen, R., Goldman, N., and Krabbe, P. A.-M. (2000). Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155, 431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Krabbe, P.A.-M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.