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Volumn 157, Issue 11, 2012, Pages 2061-2073

Population dynamics of DENV-1 genotype V in Brazil is characterized by co-circulation and strain/lineage replacement

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

EID: 84868473262     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-012-1393-9     Document Type: Article
Times cited : (43)

References (51)
  • 1
    • 34748873170 scopus 로고    scopus 로고
    • Flaviviridae: the viruses and their replication
    • 5th edn., D. M. Knipe and P. M. Howley (Eds.), Philadelphia: Lippincott-Raven Publishers
    • Lindenbach BD, Thiel HJ, Rice CM (2007) Flaviviridae: the viruses and their replication. In: Knipe DM, Howley PM (eds) Fields virology, 5th edn. Lippincott-Raven Publishers, Philadelphia, pp 810-851.
    • (2007) Fields Virology , pp. 810-851
    • Lindenbach, B.D.1    Thiel, H.J.2    Rice, C.M.3
  • 2
    • 0031823546 scopus 로고    scopus 로고
    • Dengue and dengue hemorrhagic fever
    • Gubler DJ (1998) Dengue and dengue hemorrhagic fever. Clin microbial rev 11: 480-496.
    • (1998) Clin Microbial Rev , vol.11 , pp. 480-496
    • Gubler, D.J.1
  • 3
    • 84870251606 scopus 로고    scopus 로고
    • Dengue Hemorrhagic Fever: Diagnosis, Treatment
    • World Health Organization. Accessed 20 June 2011
    • World Health Organization (1997) Dengue Hemorrhagic Fever: Diagnosis, Treatment, Prevention and Control http://www. who. int/csr/resources/publications/dengue/Denguepublication/en/. Accessed 20 June 2011.
    • (1997) Prevention and Control
  • 5
    • 84863547813 scopus 로고    scopus 로고
    • Pan American Health Organization, Accessed 20 June 2011
    • Pan American Health Organization (2010) Number of Reported Cases of Dengue and Figures for 2010 http://new. paho. org/hq/index. php?option=com_docman&task=doc_download& gid=13075& Itemid=. Accessed 20 June 2011.
    • (2010) Number of Reported Cases of Dengue and Figures for 2010
  • 6
    • 0033724668 scopus 로고    scopus 로고
    • The Brazilian Flaviruses
    • doi:10.1016/S1286-4579(00)01320-4
    • Figueiredo LTM (2000) The Brazilian Flaviruses. Microbes Infect. doi: 10. 1016/S1286-4579(00)01320-4.
    • (2000) Microbes Infect
    • Figueiredo, L.T.M.1
  • 9
    • 84873007224 scopus 로고    scopus 로고
    • Ministry of Health-Brazil, Assunto: Isolamento do sorotipo DENV 4 em Roraima /Brasil. Accessed 20 June 2011
    • Ministry of Health-Brazil (2010) NOTA TÉCNICA CGPNCD/DEVEP/SVS/MS. Assunto: Isolamento do sorotipo DENV 4 em Roraima /Brasil http://portal. saude. gov. br/portal/arquivos/pdf/nt_denv_4reveduardo2. pdf. Accessed 20 June 2011.
    • (2010) NOTA TÉCNICA CGPNCD/DEVEP/SVS/MS
  • 11
    • 77951169874 scopus 로고    scopus 로고
    • Dengue virus surveillance for early warning, Singapore
    • Lee KS, Lai YL, Lo S et al (2010) Dengue virus surveillance for early warning, Singapore. Emerg Infect Dis 16: 847-849.
    • (2010) Emerg Infect Dis , vol.16 , pp. 847-849
    • Lee, K.S.1    Lai, Y.L.2    Lo, S.3
  • 12
    • 83555178397 scopus 로고    scopus 로고
    • Dengue virus surveillance in Singapore reveals high viral diversity through multiple introductions and in situ evolution
    • doi:10.1016/j.meegid.2011.10.012
    • Lee KS, Lo S, Tan SS et al (2011) Dengue virus surveillance in Singapore reveals high viral diversity through multiple introductions and in situ evolution. Infect Genet Evol. doi: 10. 1016/j. meegid. 2011. 10. 012.
    • (2011) Infect Genet Evol
    • Lee, K.S.1    Lo, S.2    Tan, S.S.3
  • 13
    • 79960996366 scopus 로고    scopus 로고
    • First report of multiple lineages of dengue viruses type 1 in Rio de Janeiro, Brazil
    • doi:10.1186/1743-422X-8-387
    • dos Santos FB, Nogueira FB, Castro MG et al (2011) First report of multiple lineages of dengue viruses type 1 in Rio de Janeiro, Brazil. Virol J. doi: 10. 1186/1743-422X-8-387.
    • (2011) Virol J
    • dos Santos, F.B.1    Nogueira, F.B.2    Castro, M.G.3
  • 15
    • 84873013843 scopus 로고    scopus 로고
    • Ministry of Health-Brazil, Identificação de Áreas de Maior Vulnerabilidade para Ocorrência de Dengue no período de Transmissão 2010/2011 com vistas a subsidiar a intensificação das ações de controle. Accessed June 2011
    • o 118 / 2010 CGPNCD/DEVEP/SVS/MS. Identificação de Áreas de Maior Vulnerabilidade para Ocorrência de Dengue no período de Transmissão 2010/2011 com vistas a subsidiar a intensificação das ações de controle http://portal. saude. gov. br/portal/arquivos/pdf/nt_aval_vul_epid_dengue_verao_10_11. pdf. Accessed June 2011.
    • (2010) o 118 / 2010 CGPNCD/DEVEP/SVS/MS
  • 16
    • 0036924774 scopus 로고    scopus 로고
    • Diversity and evolution of the envelope gene of dengue virus type1
    • Gonçalvez AP, Escalante AA, Pujol FH et al (2001) Diversity and evolution of the envelope gene of dengue virus type1. Virology 303: 110-119.
    • (2001) Virology , vol.303 , pp. 110-119
    • Gonçalvez, A.P.1    Escalante, A.A.2    Pujol, F.H.3
  • 17
    • 7644225029 scopus 로고    scopus 로고
    • Comparison of dengue-1 virus envelope glycoprotein gene sequences from French Polynesia
    • Laille M, Roche C (2004) Comparison of dengue-1 virus envelope glycoprotein gene sequences from French Polynesia. Am J Trop Med Hyg 71: 478-484.
    • (2004) Am J Trop Med Hyg , vol.71 , pp. 478-484
    • Laille, M.1    Roche, C.2
  • 18
    • 21744442486 scopus 로고    scopus 로고
    • Molecular epidemiology of type 1 and 2 dengue viruses in Brazil from 1988 to 2001
    • Neto RJP, Lima DM, de Paula SO et al (2005) Molecular epidemiology of type 1 and 2 dengue viruses in Brazil from 1988 to 2001. Braz J Med Biol Res 38: 843-852.
    • (2005) Braz J Med Biol Res , vol.38 , pp. 843-852
    • Neto, R.J.P.1    Lima, D.M.2    de Paula, S.O.3
  • 19
    • 77149158463 scopus 로고    scopus 로고
    • Comparative analysis of American Dengue virus type 1 full-genome sequences
    • doi:10.1007/s11262-009-0428-0
    • Carvalho SES, Martin DP, Oliveira LM et al (2010) Comparative analysis of American Dengue virus type 1 full-genome sequences. Virus Genes. doi: 10. 1007/s11262-009-0428-0.
    • (2010) Virus Genes
    • Carvalho, S.E.S.1    Martin, D.P.2    Oliveira, L.M.3
  • 20
    • 82655187219 scopus 로고    scopus 로고
    • A phylogenetic analysis using full-length viral genomes of South American dengue serotype 3 in consecutive Venezuelan outbreaks reveals a novel NS5 mutation
    • Schmidt DJ, Pickett BE, Camacho D et al (2011) A phylogenetic analysis using full-length viral genomes of South American dengue serotype 3 in consecutive Venezuelan outbreaks reveals a novel NS5 mutation. Infect Genet Evol 11: 2011-2019.
    • (2011) Infect Genet Evol , vol.11 , pp. 2011-2019
    • Schmidt, D.J.1    Pickett, B.E.2    Camacho, D.3
  • 21
    • 68049142320 scopus 로고    scopus 로고
    • Multiple alignment of DNA sequences with MAFFT
    • doi:10.1007/978-1-59745-251-9_3
    • Katoh K, Asimenos G, Toh H (2009) Multiple alignment of DNA sequences with MAFFT. Methods Mol Biol. doi: 10. 1007/978-1-59745-251-9_3.
    • (2009) Methods Mol Biol
    • Katoh, K.1    Asimenos, G.2    Toh, H.3
  • 22
    • 14644397888 scopus 로고    scopus 로고
    • RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
    • doi:10.1093/bioinformatics/bti191
    • Stamatakis A, Ludwig T, Meier H (2005) RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinforma. doi: 10. 1093/bioinformatics/bti191.
    • (2005) Bioinforma
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3
  • 23
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • doi:10.1093/molbev/msr121
    • Tamura K, Peterson D, Peterson N et al (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. doi: 10. 1093/molbev/msr121.
    • (2011) Mol Biol Evol
    • Tamura, K.1    Peterson, D.2    Peterson, N.3
  • 24
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: a flexible and fast computer program for analyzing recombination
    • doi:10.1093/bioinformatics/btq467
    • Martin DP, Lemey P, Lott M et al (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinforma. doi: 10. 1093/bioinformatics/btq467.
    • (2010) Bioinforma
    • Martin, D.P.1    Lemey, P.2    Lott, M.3
  • 25
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: a program package for phylogenetic analysis by maximum likelihood
    • Yang Z (2007) PAML 4: a program package for phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 28
    • 84857654294 scopus 로고    scopus 로고
    • Comparative evolutionary epidemiology of dengue viruses serotypes
    • doi: 10. 1016/j. meegid. 2011. 12. 011
    • Costa RL, Voloch CM, Schrago CG (2012) Comparative evolutionary epidemiology of dengue viruses serotypes. Infect Gen Evol. doi: 10. 1016/j. meegid. 2011. 12. 011.
    • (2012) Infect Gen Evol
    • Costa, R.L.1    Voloch, C.M.2    Schrago, C.G.3
  • 30
    • 84873015233 scopus 로고    scopus 로고
    • v1.6.1. Accessed 20 Apr 2011
    • Rambaut A, Drummond AJ (2002-2010) TreeAnotator v1. 6. 1. http://beast. bio. ed. ac. uk/. Accessed 20 Apr 2011.
    • (2002) TreeAnotator
    • Rambaut, A.1    Drummond, A.J.2
  • 32
    • 77956486107 scopus 로고    scopus 로고
    • Phylogenetic history demonstrates two different lineages of dengue type 1 virus in Colombia
    • Mendez JA, Usme-Ciro JA, Domingo C et al (2010) Phylogenetic history demonstrates two different lineages of dengue type 1 virus in Colombia. Virol J 7: 226.
    • (2010) Virol J , vol.7 , pp. 226
    • Mendez, J.A.1    Usme-Ciro, J.A.2    Domingo, C.3
  • 33
    • 0037229543 scopus 로고    scopus 로고
    • Inferring the rate and time-scale of Dengue virus evolution
    • Twiddy SS, Holmes EC, Rambaut A (2003) Inferring the rate and time-scale of Dengue virus evolution. Mol Biol Evol 20(1): 122-129.
    • (2003) Mol Biol Evol , vol.20 , Issue.1 , pp. 122-129
    • Twiddy, S.S.1    Holmes, E.C.2    Rambaut, A.3
  • 35
    • 0141565071 scopus 로고    scopus 로고
    • Patterns of intra- and interhost nonsynonymous variation reveal strong purifying selection in dengue virus
    • Holmes EC (2003) Patterns of intra- and interhost nonsynonymous variation reveal strong purifying selection in dengue virus. J. Virol 77: 11296-11298.
    • (2003) J. Virol , vol.77 , pp. 11296-11298
    • Holmes, E.C.1
  • 36
    • 29744466295 scopus 로고    scopus 로고
    • Clade replacements in dengue virus serotypes 1 and 3 are associated with changing serotype prevalence
    • Zhang C, Mammen MP Jr, Chinnawirotpisan P (2005) Clade replacements in dengue virus serotypes 1 and 3 are associated with changing serotype prevalence. J Virol 79: 15123-15130.
    • (2005) J Virol , vol.79 , pp. 15123-15130
    • Zhang, C.1    Mammen Jr., M.P.2    Chinnawirotpisan, P.3
  • 37
    • 84878134497 scopus 로고    scopus 로고
    • Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia
    • doi:10.1016/j.meegid.2011.06.019
    • Duong V, Simmons C, Gavotte L et al (2011) Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia. Infect Genet Evol. doi: 10. 1016/j. meegid. 2011. 06. 019.
    • (2011) Infect Genet Evol
    • Duong, V.1    Simmons, C.2    Gavotte, L.3
  • 38
    • 79959229189 scopus 로고    scopus 로고
    • Fever from the forest: prospects for the continued emergence of sylvatic dengue virus and its impact on public health
    • doi:10.1038/nrmicro2595
    • Vasilakis N, Cardosa J, Hanley KA et al (2011) Fever from the forest: prospects for the continued emergence of sylvatic dengue virus and its impact on public health. Nat Rev Microbiol. doi: 10. 1038/nrmicro2595.
    • (2011) Nat Rev Microbiol
    • Vasilakis, N.1    Cardosa, J.2    Hanley, K.A.3
  • 39
    • 84857073122 scopus 로고    scopus 로고
    • Dengue-1 virus clade replacement in Thailand associated with enhanced mosquito transmission
    • doi:10.1128/JVI.06458-11
    • Lambrechts L, Fansiri T, Pongsiri A et al (2011) Dengue-1 virus clade replacement in Thailand associated with enhanced mosquito transmission. J Virol. doi: 10. 1128/JVI. 06458-11.
    • (2011) J Virol
    • Lambrechts, L.1    Fansiri, T.2    Pongsiri, A.3
  • 40
    • 50049120491 scopus 로고    scopus 로고
    • Closing the door on flaviviruses: entry as a target for antiviral drug design
    • doi:10.1016/j.antiviral.2008.05.004
    • Perera R, Khaliq M, Kuhn RJ (2008) Closing the door on flaviviruses: entry as a target for antiviral drug design. Antivir Res. doi: 10. 1016/j. antiviral. 2008. 05. 004.
    • (2008) Antivir Res
    • Perera, R.1    Khaliq, M.2    Kuhn, R.J.3
  • 41
    • 56549118853 scopus 로고    scopus 로고
    • Molecular mechanisms of antibody-mediated neutralisation of flavivirus infection
    • doi:10.1017/S1462399408000665
    • Pierson TC, Diamond MS (2008) Molecular mechanisms of antibody-mediated neutralisation of flavivirus infection. Expert Rev Mol Med. doi: 10. 1017/S1462399408000665.
    • (2008) Expert Rev Mol Med
    • Pierson, T.C.1    Diamond, M.S.2
  • 42
    • 0026808371 scopus 로고
    • Correlation of the E protein binding with cell susceptibility to dengue 4 virus infection
    • doi:10.1099/0022-1317-73-8-2155
    • Anderson R, King AD, Innis BL (1992) Correlation of the E protein binding with cell susceptibility to dengue 4 virus infection. J Gen Virol. doi: 10. 1099/0022-1317-73-8-2155.
    • (1992) J Gen Virol
    • Anderson, R.1    King, A.D.2    Innis, B.L.3
  • 43
    • 0029911394 scopus 로고    scopus 로고
    • Demonstration of binding of dengue virus envelope protein to target cells
    • Chen Y, Maguire T, Marks RM (1996) Demonstration of binding of dengue virus envelope protein to target cells. J Virol 70: 8765-8772.
    • (1996) J Virol , vol.70 , pp. 8765-8772
    • Chen, Y.1    Maguire, T.2    Marks, R.M.3
  • 44
    • 0036890904 scopus 로고    scopus 로고
    • Genome analysis of dengue type-1 virus isolated between 1990 and 2001 in Brazil reveals a remarkable conservation of the structural proteins but amino acid differences in the nonstructural proteins
    • dos Santos CND, Rocha CFS, Cordeiro M et al (2002) Genome analysis of dengue type-1 virus isolated between 1990 and 2001 in Brazil reveals a remarkable conservation of the structural proteins but amino acid differences in the nonstructural proteins. Virus Res 90: 197-205.
    • (2002) Virus Res , vol.90 , pp. 197-205
    • dos Santos, C.N.D.1    Rocha, C.F.S.2    Cordeiro, M.3
  • 45
    • 36749028160 scopus 로고    scopus 로고
    • Multiple recombinant dengue type 1 viruses in an isolate from a dengue patient
    • doi:10.1099/vir.083122-0
    • Aaskov J, Buzacott K, Field E et al (2007) Multiple recombinant dengue type 1 viruses in an isolate from a dengue patient. J Gen Virol. doi: 10. 1099/vir. 083122-0.
    • (2007) J Gen Virol
    • Aaskov, J.1    Buzacott, K.2    Field, E.3
  • 46
    • 7044231273 scopus 로고    scopus 로고
    • Sustained transmission of dengue virus type 1 in the Pacific due to repeated introductions of different Asian strains
    • A-Nuegoonpipat A, Berlioz-Arthaud A, Chow V et al (2004) Sustained transmission of dengue virus type 1 in the Pacific due to repeated introductions of different Asian strains. Virology 239: 505-512.
    • (2004) Virology , vol.239 , pp. 505-512
    • A-Nuegoonpipat, A.1    Berlioz-Arthaud, A.2    Chow, V.3
  • 47
    • 0034983247 scopus 로고    scopus 로고
    • Evidence for recombination in natural populations of dengue virus type 1 based on the analysis of complete genome sequences
    • Tolou HJG, Couissinier-Paris P, Durand JP et al (2001) Evidence for recombination in natural populations of dengue virus type 1 based on the analysis of complete genome sequences. J Gen Virol 82: 1283-1290.
    • (2001) J Gen Virol , vol.82 , pp. 1283-1290
    • Tolou, H.J.G.1    Couissinier-Paris, P.2    Durand, J.P.3
  • 48
    • 44449124478 scopus 로고    scopus 로고
    • Identification of a recombinant dengue virus type 1 with 3 recombination regions in natural populations in Guangdong province, China
    • doi:10.1007/s00705-008-0090-1
    • Chen SP, Yu M, Jiang T et al (2008) Identification of a recombinant dengue virus type 1 with 3 recombination regions in natural populations in Guangdong province, China. Arch Virol. doi: 10. 1007/s00705-008-0090-1.
    • (2008) Arch Virol
    • Chen, S.P.1    Yu, M.2    Jiang, T.3
  • 49
    • 74549172107 scopus 로고    scopus 로고
    • Multiple recombinants in two dengue vírus, serotype-2 isolates from patients from Oaxaca, Mexico
    • doi:10.1186/1471-2180-9-260
    • Perez-Ramirez G, Diaz-Badillo A, Camacho-Nuez M et al (2009) Multiple recombinants in two dengue vírus, serotype-2 isolates from patients from Oaxaca, Mexico. BMC Microbiol. doi: 10. 1186/1471-2180-9-260.
    • (2009) BMC Microbiol
    • Perez-Ramirez, G.1    Diaz-Badillo, A.2    Camacho-Nuez, M.3
  • 50
    • 84868463186 scopus 로고
    • Dengue in the Caribbean, 1977
    • Pan American Health Organization. PAHO scientific publication 375. Washington (DC): Pan American Health Organization
    • Pan American Health Organization (1979) Dengue in the Caribbean, 1977. In: Proceedings of a workshop held in Montego Bay, Jamaica, 8-11 May, 1978. PAHO scientific publication 375. Washington (DC): Pan American Health Organization.
    • (1979) In: Proceedings of a workshop held in Montego Bay, Jamaica, 8-11 May, 1978
  • 51
    • 84861382309 scopus 로고    scopus 로고
    • Phylogeography and population dynamics of Dengue viruses in the Americas
    • doi:10.1093/molbev/msr320
    • Allicock OM, Lemey P, Tatem AJ et al (2012) Phylogeography and population dynamics of Dengue viruses in the Americas. Mol Biol Evol. doi: 10. 1093/molbev/msr320.
    • (2012) Mol Biol Evol
    • Allicock, O.M.1    Lemey, P.2    Tatem, A.J.3


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