-
1
-
-
79959838081
-
Integrated genomic analyses of ovarian carcinoma
-
Cancer Genome Atlas Research Network: Integrated genomic analyses of ovarian carcinoma. Nature. 2011, 474 (7353): 609-615. 10.1038/nature10166.
-
(2011)
Nature
, vol.474
, Issue.7353
, pp. 609-615
-
-
-
2
-
-
84877254190
-
Integrated genomic characterization of endometrial carcinoma
-
Cancer Genome Atlas Research Network, Kandoth C, Schultz N, Cherniack AD, Akbani R, Liu Y, et al: Integrated genomic characterization of endometrial carcinoma. Nature. 2013, 497 (7447): 67-73. 10.1038/nature12113.
-
(2013)
Nature
, vol.497
, Issue.7447
, pp. 67-73
-
-
Kandoth, C.1
Schultz, N.2
Cherniack, A.D.3
Akbani, R.4
Liu, Y.5
-
4
-
-
77955894453
-
Gene expression profile of BRCAness that correlates with responsiveness to chemotherapy and with outcome in patients with epithelial ovarian cancer
-
Konstantinopoulos PA, Spentzos D, Karlan BY, Taniguchi T, Fountzilas E, et al: Gene expression profile of BRCAness that correlates with responsiveness to chemotherapy and with outcome in patients with epithelial ovarian cancer. J Clin Oncol. 2010, 28 (22): 3555-3561. 10.1200/JCO.2009.27.5719.
-
(2010)
J Clin Oncol
, vol.28
, Issue.22
, pp. 3555-3561
-
-
Konstantinopoulos, P.A.1
Spentzos, D.2
Karlan, B.Y.3
Taniguchi, T.4
Fountzilas, E.5
-
5
-
-
81555216077
-
Gene expression profiling in breast cancer: classification, prognostication, and prediction
-
Reis-Filho JS, Pusztai L: Gene expression profiling in breast cancer: classification, prognostication, and prediction. Lancet. 2011, 378 (9805): 1812-1823. 10.1016/S0140-6736(11)61539-0.
-
(2011)
Lancet
, vol.378
, Issue.9805
, pp. 1812-1823
-
-
Reis-Filho, J.S.1
Pusztai, L.2
-
6
-
-
84863922124
-
Comprehensive molecular characterization of human colon and rectal cancer
-
Cancer Genome Atlas Network: Comprehensive molecular characterization of human colon and rectal cancer. Nature. 2012, 487 (7407): 330-337. 10.1038/nature11252.
-
(2012)
Nature
, vol.487
, Issue.7407
, pp. 330-337
-
-
-
7
-
-
84858342654
-
EGFR-mutant lung adenocarcinomas treated first-line with the novel EGFR inhibitor, XL647, can subsequently retain moderate sensitivity to erlotinib
-
Chmielecki J, Pietanza MC, Aftab D, Shen R, Zhao Z, et al: EGFR-mutant lung adenocarcinomas treated first-line with the novel EGFR inhibitor, XL647, can subsequently retain moderate sensitivity to erlotinib. J Thorac Oncol. 2012, 7 (2): 434-442. 10.1097/JTO.0b013e31823c5aee.
-
(2012)
J Thorac Oncol
, vol.7
, Issue.2
, pp. 434-442
-
-
Chmielecki, J.1
Pietanza, M.C.2
Aftab, D.3
Shen, R.4
Zhao, Z.5
-
8
-
-
79851510907
-
Somatic mutations in cancer prognosis and prediction: lessons from TP53 and EGFR genes
-
Olivier M, Taniere P: Somatic mutations in cancer prognosis and prediction: lessons from TP53 and EGFR genes. Curr Opin Oncol. 2011, 23 (1): 88-92. 10.1097/CCO.0b013e3283412dfa.
-
(2011)
Curr Opin Oncol
, vol.23
, Issue.1
, pp. 88-92
-
-
Olivier, M.1
Taniere, P.2
-
9
-
-
84901275269
-
Acquired resistance of EGFR-mutant lung adenocarcinomas to afatinib plus cetuximab is associated with activation of mTORC1
-
Pirazzoli V, Nebhan C, Song X, Wurtz A, Walther Z, Cai G, et al: Acquired resistance of EGFR-mutant lung adenocarcinomas to afatinib plus cetuximab is associated with activation of mTORC1. Cell Rep. 2014, 7 (4): 999-1008. 10.1016/j.celrep.2014.04.014.
-
(2014)
Cell Rep
, vol.7
, Issue.4
, pp. 999-1008
-
-
Pirazzoli, V.1
Nebhan, C.2
Song, X.3
Wurtz, A.4
Walther, Z.5
Cai, G.6
-
10
-
-
84892833777
-
Discovery and saturation analysis of cancer genes across 21 tumour types
-
Lawrence MS, Stojanov P, Mermel CH, Robinson JT, Garraway LA, et al: Discovery and saturation analysis of cancer genes across 21 tumour types. Nature. 2014, 505 (7484): 495-501. 10.1038/nature12912.
-
(2014)
Nature
, vol.505
, Issue.7484
, pp. 495-501
-
-
Lawrence, M.S.1
Stojanov, P.2
Mermel, C.H.3
Robinson, J.T.4
Garraway, L.A.5
-
11
-
-
84880507665
-
Mutational heterogeneity in cancer and the search for new cancer-associated genes
-
Lawrence MS, Stojanov P, Polak P, Kryukov GV, Cibulskis K, Sivachenko P, et al: Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature. 2013, 499 (7457): 214-218. 10.1038/nature12213.
-
(2013)
Nature
, vol.499
, Issue.7457
, pp. 214-218
-
-
Lawrence, M.S.1
Stojanov, P.2
Polak, P.3
Kryukov, G.V.4
Cibulskis, K.5
Sivachenko, P.6
-
12
-
-
84887084951
-
Network-based stratification of tumor mutations
-
Hofree M, Shen JP, Carter H, Gross A, Ideker T: Network-based stratification of tumor mutations. Nat Methods. 2013, 10 (11): 1108-1115. 10.1038/nmeth.2651.
-
(2013)
Nat Methods
, vol.10
, Issue.11
, pp. 1108-1115
-
-
Hofree, M.1
Shen, J.P.2
Carter, H.3
Gross, A.4
Ideker, T.5
-
13
-
-
35348891430
-
Network-based classification of breast cancer metastasis
-
Chuang HY, Lee E, Liu YT, Lee D, Ideker T: Network-based classification of breast cancer metastasis. Mol Syst Biol. 2007, 3: 140-
-
(2007)
Mol Syst Biol
, vol.3
, pp. 140
-
-
Chuang, H.Y.1
Lee, E.2
Liu, Y.T.3
Lee, D.4
Ideker, T.5
-
14
-
-
41649119247
-
Protein networks in disease
-
Ideker T, Sharan R: Protein networks in disease. Genome Res. 2008, 18 (4): 644-652. 10.1101/gr.071852.107.
-
(2008)
Genome Res
, vol.18
, Issue.4
, pp. 644-652
-
-
Ideker, T.1
Sharan, R.2
-
15
-
-
84856535081
-
Mutual exclusivity analysis identifies oncogenic network modules
-
Ciriello G, Cerami E, Sander C, Schultz N: Mutual exclusivity analysis identifies oncogenic network modules. Genome Res. 2012, 22 (2): 398-406. 10.1101/gr.125567.111.
-
(2012)
Genome Res
, vol.22
, Issue.2
, pp. 398-406
-
-
Ciriello, G.1
Cerami, E.2
Sander, C.3
Schultz, N.4
-
16
-
-
84885735554
-
Mutational landscape and significance across 12 major cancer types
-
Kandoth C, McLellan MD, Vandin F, Ye K, Niu B, Lu C, et al: Mutational landscape and significance across 12 major cancer types. Nature. 2013, 502 (7471): 333-339. 10.1038/nature12634.
-
(2013)
Nature
, vol.502
, Issue.7471
, pp. 333-339
-
-
Kandoth, C.1
McLellan, M.D.2
Vandin, F.3
Ye, K.4
Niu, B.5
Lu, C.6
-
17
-
-
79952284127
-
Hallmarks of cancer: the next generation
-
Hanahan D, Weinberg RA: Hallmarks of cancer: the next generation. Cell. 2011, 144 (5): 646-674. 10.1016/j.cell.2011.02.013.
-
(2011)
Cell
, vol.144
, Issue.5
, pp. 646-674
-
-
Hanahan, D.1
Weinberg, R.A.2
-
18
-
-
74049122828
-
Cancer systems biology: a network modeling perspective
-
Kreeger PK, Lauffenburger DA: Cancer systems biology: a network modeling perspective. Carcinogenesis. 2010, 31 (1): 2-8. 10.1093/carcin/bgp261.
-
(2010)
Carcinogenesis
, vol.31
, Issue.1
, pp. 2-8
-
-
Kreeger, P.K.1
Lauffenburger, D.A.2
-
19
-
-
84896689570
-
Molecular profiling of the residual disease of triple-negative breast cancers after neoadjuvant chemotherapy identifies actionable therapeutic targets
-
Balko JM, Giltnane JM, Wang K, Schwarz LJ, Young CD, Cook RS, et al: Molecular profiling of the residual disease of triple-negative breast cancers after neoadjuvant chemotherapy identifies actionable therapeutic targets. Cancer Discov. 2014, 4 (2): 232-245. 10.1158/2159-8290.CD-13-0286.
-
(2014)
Cancer Discov
, vol.4
, Issue.2
, pp. 232-245
-
-
Balko, J.M.1
Giltnane, J.M.2
Wang, K.3
Schwarz, L.J.4
Young, C.D.5
Cook, R.S.6
-
20
-
-
84887491073
-
Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing
-
Frampton GM, Fichtenholtz A, Otto GA, Wang K, Downing SR, He J, et al: Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing. Nat Biotechnol. 2013, 31 (11): 1023-1031. 10.1038/nbt.2696.
-
(2013)
Nat Biotechnol
, vol.31
, Issue.11
, pp. 1023-1031
-
-
Frampton, G.M.1
Fichtenholtz, A.2
Otto, G.A.3
Wang, K.4
Downing, S.R.5
He, J.6
-
21
-
-
84875490185
-
Cancer genome landscapes
-
Vogelstein B, Papadopoulos N, Velculescu VE, Zhou S, Diaz LA, Kinzler KW, et al: Cancer genome landscapes. Science. 2013, 339 (6127): 1546-1558. 10.1126/science.1235122.
-
(2013)
Science
, vol.339
, Issue.6127
, pp. 1546-1558
-
-
Vogelstein, B.1
Papadopoulos, N.2
Velculescu, V.E.3
Zhou, S.4
Diaz, L.A.5
Kinzler, K.W.6
-
22
-
-
84908460595
-
Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin
-
Hoadley KA, Yau C, Wolf DM, Cherniack AD, Tamborero D, Ng S, et al: Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin. Cell. 2014, 158 (4): 929-944. 10.1016/j.cell.2014.06.049.
-
(2014)
Cell
, vol.158
, Issue.4
, pp. 929-944
-
-
Hoadley, K.A.1
Yau, C.2
Wolf, D.M.3
Cherniack, A.D.4
Tamborero, D.5
Ng, S.6
-
23
-
-
79959898376
-
Prioritizing candidate disease genes by network-based boosting of genome-wide association data
-
Lee I, Blom UM, Wang PI, Shim JE, Marcotte EM: Prioritizing candidate disease genes by network-based boosting of genome-wide association data. Genome Res. 2011, 21 (7): 1109-1121. 10.1101/gr.118992.110.
-
(2011)
Genome Res
, vol.21
, Issue.7
, pp. 1109-1121
-
-
Lee, I.1
Blom, U.M.2
Wang, P.I.3
Shim, J.E.4
Marcotte, E.M.5
-
24
-
-
0033592606
-
Learning the parts of objects by non-negative matrix factorization
-
Lee DD, Seung HS: Learning the parts of objects by non-negative matrix factorization. Nature. 1999, 401 (6755): 788-791. 10.1038/44565.
-
(1999)
Nature
, vol.401
, Issue.6755
, pp. 788-791
-
-
Lee, D.D.1
Seung, H.S.2
-
25
-
-
67049155384
-
Han J: Non-negative Matrix Factorization on Manifold
-
Cai DH X, Wu X, Han J: Non-negative Matrix Factorization on Manifold. IEEE. 2008, 63-72.
-
(2008)
IEEE
, pp. 63-72
-
-
Cai DH, X.1
Wu, X.2
-
26
-
-
0038724494
-
Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data
-
Stefano Monti PT, Mill Mesirov, Todd Golub: Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data. Machine Learning. 2003, 52: 91-118. 10.1023/A:1023949509487.
-
(2003)
Machine Learning
, vol.52
, pp. 91-118
-
-
Stefano Monti, P.T.1
Mill, M.2
Todd, G.3
-
27
-
-
1642529511
-
Metagenes and molecular pattern discovery using matrix factorization
-
Brunet JP, Tamayo P, Golub TR, Mesirov JP: Metagenes and molecular pattern discovery using matrix factorization. Proc Natl Acad Sci USA. 2004, 101 (12): 4164-4169. 10.1073/pnas.0308531101.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.12
, pp. 4164-4169
-
-
Brunet, J.P.1
Tamayo, P.2
Golub, T.R.3
Mesirov, J.P.4
|