Simple and Integrated Spintip-Based Technology Applied for Deep Proteome Profiling

Analytical Chemistry

Volumn 88, Issue 9, 2016, Pages 4864-4871

  Chen, Wendong ^a,b   Wang, Shuai ^c   Adhikari, Subash ^a   Deng, Zuhui ^c   Wang, Lingjue ^a   Chen, Lan ^a   Ke, Mi ^a   Yang, Pengyuan ^b   Tian, Ruijun ^a  

^a SOUTHERN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b FUDAN UNIVERSITY   (China)

^c SHENZHEN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MEMBRANES; CELLS; CORRELATION METHODS; CYTOLOGY; DESALINATION; MASS SPECTROMETRY; MOLECULAR BIOLOGY; MULTIPLEXING; STEM CELLS;

MEMBRANE PROTEINS; PEARSON CORRELATION COEFFICIENTS; PROTEOME PROFILING; PROTEOMIC ANALYSIS; PROTEOMIC TECHNOLOGIES; PROTEOMICS TECHNOLOGY; SAMPLE PREPARATION; STRONG CATION EXCHANGES;

PROTEINS;

PROTEOME;

CHEMISTRY; DECIDUOUS TOOTH; GINGIVA DISEASE; HEK293 CELL LINE; HUMAN; MASS SPECTROMETRY; PATHOLOGY; STEM CELL;

HEK293 CELLS; HUMANS; MASS SPECTROMETRY; PROTEOME; STEM CELLS; TOOTH EXFOLIATION; TOOTH, DECIDUOUS;

EID: 84968764310     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/acs.analchem.6b00631     Document Type: Article

References (40)

1. Cravatt, B. F.; Simon, G. M.; Yates, J. R. Nature 2007, 450, 991-1000 10.1038/nature06525
2. Mann, M. Clin. Chem. 2016, 62, 293-294 10.1373/clinchem.2014.237271
3. Hebert, A. S.; Richards, A. L.; Bailey, D. J.; Ulbrich, A.; Coughlin, E. E.; Westphall, M. S.; Coon, J. J. Mol. Cell. Proteomics 2014, 13, 339-347 10.1074/mcp.M113.034769
4. Kelstrup, C. D.; Jersie-Christensen, R. R.; Batth, T. S.; Arrey, T. N.; Kuehn, A.; Kellmann, M.; Olsen, J. V. J. Proteome Res. 2014, 13, 6187-6195 10.1021/pr500985w
5. Meissner, F.; Scheltema, R. A.; Mollenkopf, H.-J.; Mann, M. Science 2013, 340, 475-478 10.1126/science.1232578
6. Mertins, P.; Qiao, J. W.; Patel, J.; Udeshi, N. D.; Clauser, K. R.; Mani, D. R.; Burgess, M. W.; Gillette, M. A.; Jaffe, J. D.; Carr, S. A. Nat. Methods 2013, 10, 634-637 10.1038/nmeth.2518
7. Monetti, M.; Nagaraj, N.; Sharma, K.; Mann, M. Nat. Methods 2011, 8, 655-658 10.1038/nmeth.1647
8. Guo, T.; Kouvonen, P.; Koh, C. C.; Gillet, L. C.; Wolski, W. E.; Rost, H. L.; Rosenberger, G.; Collins, B. C.; Blum, L. C.; Gillessen, S.; Joerger, M.; Jochum, W.; Aebersold, R. Nat. Med. 2015, 21, 407-413 10.1038/nm.3807
9. Ethier, M.; Hou, W.; Duewel, H. S.; Figeys, D. J. Proteome Res. 2006, 5, 2754-2759 10.1021/pr060312m
10. Wisniewski, J. R.; Zougman, A.; Nagaraj, N.; Mann, M. Nat. Methods 2009, 6, 359-362 10.1038/nmeth.1322
11. Hughes, C. S.; Foehr, S.; Garfield, D. A.; Furlong, E. E.; Steinmetz, L. M.; Krijgsveld, J. Mol. Syst. Biol. 2014, 10, 1-14 10.15252/msb.20145625
12. Chen, Q.; Yan, G.; Gao, M.; Zhang, X. Anal. Chem. 2015, 87, 6674-6680 10.1021/acs.analchem.5b00808
13. Wang, N.; Xu, M.; Wang, P.; Li, L. Anal. Chem. 2010, 82, 2262-2271 10.1021/ac9023022
14. Martin, J. G.; Rejtar, T.; Martin, S. A. Anal. Chem. 2013, 85, 10680-10685 10.1021/ac401937c
15. Maurer, M.; Müller, A. C.; Wagner, C.; Huber, M. L.; Rudashevskaya, E. L.; Wagner, S. N.; Bennett, K. L. J. Proteome Res. 2013, 12, 1040-1048 10.1021/pr301009u
16. Li, S.; Plouffe, B. D.; Belov, A. M.; Ray, S.; Wang, X.; Murthy, S. K.; Karger, B. L.; Ivanov, A. R. Mol. Cell. Proteomics 2015, 14, 1672-1683 10.1074/mcp.M114.045724
17. Tian, R.; Hoa, X. D.; Lambert, J.-P.; Pezacki, J. P.; Veres, T.; Figeys, D. Anal. Chem. 2011, 83, 4095-4102 10.1021/ac200194d
18. Tian, R.; Wang, S.; Elisma, F.; Li, L.; Zhou, H.; Wang, L.; Figeys, D. Mol. Cell. Proteomics 2011, 10, 1-10 10.1074/mcp.M110.000679
19. Tian, R.; Alvarez-Saavedra, M.; Cheng, H.-Y. M.; Figeys, D. Mol. Cell. Proteomics 2011, 10, 1-16 10.1074/mcp.M110.007252
20. Kulak, N. A.; Pichler, G.; Paron, I.; Nagaraj, N.; Mann, M. Nat. Methods 2014, 11, 319-324 10.1038/nmeth.2834
21. Zougman, A.; Selby, P. J.; Banks, R. E. Proteomics 2014, 14, 1006-1000 10.1002/pmic.201300553
22. Zougman, A.; Banks, R. E. PLoS One 2015, 10, 1-7 10.1371/journal.pone.0138775
23. Song, C.; Ye, M.; Han, G.; Jiang, X.; Wang, F.; Yu, Z.; Chen, R.; Zou, H. Anal. Chem. 2010, 82, 53-56 10.1021/ac9023044
24. Liu, J.; Wang, F.; Mao, J.; Zhang, Z.; Liu, Z.; Huang, G.; Cheng, K.; Zou, H. Anal. Chem. 2015, 87, 2054-2057 10.1021/ac504700t
25. Eng, J. K.; McCormack, A. L.; Yates, J. R. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989 10.1016/1044-0305(94)80016-2
26. Kall, L.; Canterbury, J. D.; Weston, J.; Noble, W. S.; MacCoss, M. J. Nat. Methods 2007, 4, 923-925 10.1038/nmeth1113
27. Cox, J.; Mann, M. Nat. Biotechnol. 2008, 26, 1367-1372 10.1038/nbt.1511
28. Wiśniewski, J. R.; Rakus, D. Data Brief 2014, 1, 7-11 10.1016/j.dib.2014.08.004
29. Aivaliotis, M.; Karas, M.; Tsiotis, G. J. Proteome Res. 2007, 6, 1048-1058 10.1021/pr060553u
30. Morgner, N.; Kleinschroth, T.; Barth, H.-D.; Ludwig, B.; Brutschy, B. J. Am. Soc. Mass Spectrom. 2007, 18, 1429-1438 10.1016/j.jasms.2007.04.013
31. Ma, J.; Zhang, L.; Liang, Z.; Shan, Y.; Zhang, Y. TrAC, Trends Anal. Chem. 2011, 30, 691-702 10.1016/j.trac.2010.12.008
32. Yuan, H.; Zhang, L.; Zhang, Y. J. Chromatogr. A 2014, 1371, 48-57 10.1016/j.chroma.2014.10.067
33. Wu, S.; Zhang, L.; Yang, K.; Liang, Z.; Zhang, L.; Zhang, Y. Anal. Bioanal. Chem. 2012, 402, 703-710 10.1007/s00216-011-5501-6
34. Zhou, H.; Wang, F.; Wang, Y.; Ning, Z.; Hou, W.; Wright, T. G.; Sundaram, M.; Zhong, S.; Yao, Z.; Figeys, D. Mol. Cell. Proteomics 2011, 10, 1-11 10.1074/mcp.O111.008425
35. Rappsilber, J.; Mann, M.; Ishihama, Y. Nat. Protoc. 2007, 2, 1896-1906 10.1038/nprot.2007.261
36. Lawrence, R. T.; Perez, E. M.; Hernández, D.; Miller, C. P.; Haas, K. M.; Irie, H. Y.; Lee, S.-I.; Blau, C. A.; Villén, J. Cell Rep. 2015, 11, 630-644 10.1016/j.celrep.2015.03.050
37. Dimayacyac-Esleta, B. R. T.; Tsai, C.-F.; Kitata, R. B.; Lin, P.-Y.; Choong, W.-K.; Lin, T.-D.; Wang, Y.-T.; Weng, S.-H.; Yang, P.-C.; Arco, S. D.; Sung, T.-Y.; Chen, Y.-J. Anal. Chem. 2015, 87, 12016-12023 10.1021/acs.analchem.5b03639
38. Cox, J.; Hein, M. Y.; Luber, C. A.; Paron, I.; Nagaraj, N.; Mann, M. Mol. Cell. Proteomics 2014, 13, 2513-2526 10.1074/mcp.M113.031591
39. Deeb, S. J.; Tyanova, S.; Hummel, M.; Schmidt-Supprian, M.; Cox, J.; Mann, M. Mol. Cell. Proteomics 2015, 14, 2947-2960 10.1074/mcp.M115.050245
40. Miura, M.; Gronthos, S.; Zhao, M. R.; Lu, B.; Fisher, L. W.; Robey, P. G.; Shi, S. T. Proc. Natl. Acad. Sci. U. S. A. 2003, 100, 5807-5812 10.1073/pnas.0937635100