-
1
-
-
84923621249
-
Marine microbial community dynamics and their ecological interpretation
-
Fuhrman JA, Cram JA, Needham DM. 2015. Marine microbial community dynamics and their ecological interpretation. Nat Rev Microbiol 13:133-146. http://dx.doi.org/10.1038/nrmicro3417
-
(2015)
Nat Rev Microbiol
, vol.13
, pp. 133-146
-
-
Fuhrman, J.A.1
Cram, J.A.2
Needham, D.M.3
-
2
-
-
84887622857
-
Stabilizing the foundation of the house that 'omics builds: the evolving value of cultured isolates to marine microbiology
-
Rappé MS. 2013. Stabilizing the foundation of the house that 'omics builds: the evolving value of cultured isolates to marine microbiology. Curr Opin Microbiol 16:618-624. http://dx.doi.org/10.1016/ j.mib.2013.09.009
-
(2013)
Curr Opin Microbiol
, vol.16
, pp. 618-624
-
-
Rappé, M.S.1
-
3
-
-
0021779934
-
Measurement of in situ activities of non-photosynthetic microorganisms in aquatic and terrestrial habitats
-
Staley JT, Konopka A. 1985. Measurement of in situ activities of non-photosynthetic microorganisms in aquatic and terrestrial habitats. Annu Rev Microbiol 39:321-346. h t t p: / / d x . d o i . o r g / 1 0 . 1 1 4 6 / annurev.mi.39.100185.001541
-
(1985)
Annu Rev Microbiol
, vol.39
, pp. 321-346
-
-
Staley, J.T.1
Konopka, A.2
-
4
-
-
0037043731
-
Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
-
Rappé MS, Connon SA, Vergin KL, Giovannoni SJ. 2002. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418: 630-633. http://dx.doi.org/10.1038/nature00917
-
(2002)
Nature
, vol.418
, pp. 630-633
-
-
Rappé, M.S.1
Connon, S.A.2
Vergin, K.L.3
Giovannoni, S.J.4
-
5
-
-
34547775666
-
Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time series study site
-
Stingl U, Tripp HJ, Giovannoni SJ. 2007. Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time series study site. ISME J 1:361-371. http://dx.doi.org/10.1038/ismej.2007.49
-
(2007)
ISME J
, vol.1
, pp. 361-371
-
-
Stingl, U.1
Tripp, H.J.2
Giovannoni, S.J.3
-
6
-
-
84872934378
-
Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade
-
Marshall KT, Morris RM. 2013. Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade. ISME J 7:452-455. http:// dx.doi.org/10.1038/ismej.2012.78
-
(2013)
ISME J
, vol.7
, pp. 452-455
-
-
Marshall, K.T.1
Morris, R.M.2
-
7
-
-
43849087058
-
The small genome of an abundant coastal ocean methylotroph
-
Giovannoni SJ, Hayakawa DH, Tripp HJ, Stingl U, Givan SA, Cho J, Oh H, Kitner JB, Vergin KL, Rappé MS. 2008. The small genome of an abundant coastal ocean methylotroph. Environ Microbiol http://dx.doi.org/10:1771-1782. http://dx.doi.org/10.1111/j.1462-2920.2008.01598.x
-
(2008)
Environ Microbiol
-
-
Giovannoni, S.J.1
Hayakawa, D.H.2
Tripp, H.J.3
Stingl, U.4
Givan, S.A.5
Cho, J.6
Oh, H.7
Kitner, J.B.8
Vergin, K.L.9
Rappé, M.S.10
-
8
-
-
84954096031
-
Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
-
Durham BP, Grote J, Whittaker KA, Bender SJ, Luo H, Grim SL, Brown JM, Casey JR, Dron A, Florez-Leiva L, Krupke A, Luria CM, Mine AH, Nigro OD, Pather S, Talarmin A, Wear EK, Weber TS, Wilson JM, Church MJ, DeLong EF, Karl DM, Steward GF, Eppley JM, Kyrpides NC, Schuster S, Rappé MS. 2014. Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome. Stand Genomic Sci 9:632-645. http:// dx.doi.org/10.4056/sigs.4998989
-
(2014)
Stand Genomic Sci
, vol.9
, pp. 632-645
-
-
Durham, B.P.1
Grote, J.2
Whittaker, K.A.3
Bender, S.J.4
Luo, H.5
Grim, S.L.6
Brown, J.M.7
Casey, J.R.8
Dron, A.9
Florez-Leiva, L.10
Krupke, A.11
Luria, C.M.12
Mine, A.H.13
Nigro, O.D.14
Pather, S.15
Talarmin, A.16
Wear, E.K.17
Weber, T.S.18
Wilson, J.M.19
Church, M.J.20
DeLong, E.F.21
Karl, D.M.22
Steward, G.F.23
Eppley, J.M.24
Kyrpides, N.C.25
Schuster, S.26
Rappé, M.S.27
more..
-
9
-
-
0027337265
-
Isolation of typical marine bacteria by dilution culture: growth, maintenance, and characteristics of isolates under laboratory conditions
-
Schut F, De Vries EJ, Gottschal JC, Robertson BR, Harder W, Prins Ra, Button DK. 1993. Isolation of typical marine bacteria by dilution culture: growth, maintenance, and characteristics of isolates under laboratory conditions. Appl Environ Microbiol 59:2150-2160
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 2150-2160
-
-
Schut, F.1
De Vries, E.J.2
Gottschal, J.C.3
Robertson, B.R.4
Harder, W.5
Prins, R.A.6
Button, D.K.7
-
10
-
-
0027338910
-
Viability and isolation of marine bacteria by dilution culture: theory, procedures, and initial results
-
Button DK, Schut F, Quang P, Martin R, Robertson BR. 1993. Viability and isolation of marine bacteria by dilution culture: theory, procedures, and initial results. Appl Environ Microbiol 59:881-891
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 881-891
-
-
Button, D.K.1
Schut, F.2
Quang, P.3
Martin, R.4
Robertson, B.R.5
-
11
-
-
84904997234
-
Implications of streamlining theory for microbial ecology
-
Giovannoni SJ, Cameron Thrash J, Temperton B. 2014. Implications of streamlining theory for microbial ecology. ISME J 8:1553-1565. http:// dx.doi.org/10.1038/ismej.2014.60
-
(2014)
ISME J
, vol.8
, pp. 1553-1565
-
-
Giovannoni, S.J.1
Cameron Thrash, J.2
Temperton, B.3
-
12
-
-
84876460076
-
Nutrient requirements for growth of the extreme oligotroph "Candidatus Pelagibacter ubique" HTCC1062 on a defined medium
-
Carini P, Steindler L, Beszteri S, Giovannoni SJ. 2013. Nutrient requirements for growth of the extreme oligotroph "Candidatus Pelagibacter ubique" HTCC1062 on a defined medium. ISME J 7:592-602. http://dx.doi.org/10.1038/ismej.2012.122
-
(2013)
ISME J
, vol.7
, pp. 592-602
-
-
Carini, P.1
Steindler, L.2
Beszteri, S.3
Giovannoni, S.J.4
-
13
-
-
0036324056
-
High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates
-
Connon SA, Giovannoni SJ. 2002. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl Environ Microbiol 68:3878-3885. http://dx.doi.org/ 10.1128/AEM.68.8.3878-3885.2002
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3878-3885
-
-
Connon, S.A.1
Giovannoni, S.J.2
-
14
-
-
34548727434
-
The importance of culturing bacterioplankton in the "omics" age
-
Giovannoni S, Stingl U. 2007. The importance of culturing bacterioplankton in the "omics" age. Nat Rev Microbiol 5:820-826. http:// dx.doi.org/10.1038/nrmicro1752
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 820-826
-
-
Giovannoni, S.1
Stingl, U.2
-
15
-
-
84961991770
-
Cultivating fastidious microbes: protocols for metagenomic library generation and analysis in petroleum hydrocarbon microbe systems
-
In McGenity TJ, Timmis, KN, Nogales Fernández B (ed) Springer, New York, NY
-
Thrash JC, Weckhorst JL, Pitre DM. 2015. Cultivating fastidious microbes: protocols for metagenomic library generation and analysis in petroleum hydrocarbon microbe systems, p 1-22. In McGenity TJ, Timmis, KN, Nogales Fernández B (ed), Hydrocarbon and lipid microbiology protocols: isolation and cultivation. Springer, New York, NY
-
(2015)
Hydrocarbon and lipid microbiology protocols: isolation and cultivation
, pp. 1-22
-
-
Thrash, J.C.1
Weckhorst, J.L.2
Pitre, D.M.3
-
16
-
-
0028888098
-
Changes in nutrient structure of river-dominated coastal waters: stoichiometric nutrient balance and its consequences
-
Justić D, Rabalais NN, Turner RE, Dortch Q. 1995. Changes in nutrient structure of river-dominated coastal waters: stoichiometric nutrient balance and its consequences. Estuar Coast Shelf Sci 40:339-356. http:// dx.doi.org/10.1016/S0272-7714(05)80014-9
-
(1995)
Estuar Coast Shelf Sci
, vol.40
, pp. 339-356
-
-
Justić, D.1
Rabalais, N.N.2
Turner, R.E.3
Dortch, Q.4
-
17
-
-
0029842153
-
Nutrient changes in the Mississippi River and system responses on the adjacent continental shelf
-
Rabalais NN, Turner RE, Justić D, Dortch Q, Wiseman WJ, Gupta BKS, Justic D. 1996. Nutrient changes in the Mississippi River and system responses on the adjacent continental shelf. Estuaries 19:386. http:// dx.doi.org/10.2307/1352458
-
(1996)
Estuaries
, vol.19
, pp. 386
-
-
Rabalais, N.N.1
Turner, R.E.2
Justić, D.3
Dortch, Q.4
Wiseman, W.J.5
Gupta, B.K.S.6
Justic, D.7
-
18
-
-
2442513357
-
Transformation of dissolved and particulate materials on continental shelves influenced by large rivers: plume processes
-
Dagg M, Benner R, Lohrenz S, Lawrence D. 2004. Transformation of dissolved and particulate materials on continental shelves influenced by large rivers: plume processes. Cont Shelf Res 24:833-858. http:// dx.doi.org/10.1016/j.csr.2004.02.003
-
(2004)
Cont Shelf Res
, vol.24
, pp. 833-858
-
-
Dagg, M.1
Benner, R.2
Lohrenz, S.3
Lawrence, D.4
-
20
-
-
44649160016
-
Culturing the marine cyanobacterium Prochlorococcus
-
Moore LR, Coe A, Zinser ER, Saito MA, Sullivan MB, Lindell D, Frois-Moniz K, Waterbury J, Chisholm SW. 2007. Culturing the marine cyanobacterium Prochlorococcus. Limnol Oceanogr Methods 5:353-362. http://dx.doi.org/10.4319/lom.2007.5.353
-
(2007)
Limnol Oceanogr Methods
, vol.5
, pp. 353-362
-
-
Moore, L.R.1
Coe, A.2
Zinser, E.R.3
Saito, M.A.4
Sullivan, M.B.5
Lindell, D.6
Frois-Moniz, K.7
Waterbury, J.8
Chisholm, S.W.9
-
21
-
-
84865553122
-
Multiple B-vitamin depletion in large areas of the coastal ocean
-
Sañudo-Wilhelmy SA, Cutter LS, Durazo R, Smail EA, Gómezconsarnau L, Webb EA, Prokopenko MG, Berelson WM, Karl DM. 2012. Multiple B-vitamin depletion in large areas of the coastal ocean. Proc Natl Acad Sci U S A 109:14041-14045. http://dx.doi.org/10.1073/ pnas.1208755109
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 14041-14045
-
-
Sañudo-Wilhelmy, S.A.1
Cutter, L.S.2
Durazo, R.3
Smail, E.A.4
Gómezconsarnau, L.5
Webb, E.A.6
Prokopenko, M.G.7
Berelson, W.M.8
Karl, D.M.9
-
22
-
-
79953022302
-
The impact of microbial metabolism on marine dissolved organic matter
-
Kujawinski EB. 2011. The impact of microbial metabolism on marine dissolved organic matter. Annu Rev Mar Sci 3:567-599. http://dx.doi.org/ 10.1146/annurev-marine-120308-081003
-
(2011)
Annu Rev Mar Sci
, vol.3
, pp. 567-599
-
-
Kujawinski, E.B.1
-
24
-
-
0347130086
-
Cultivation and growth characteristics of a diverse group of oligotrophic marine gammaproteobacteria
-
Cho JC, Giovannoni SJ. 2004. Cultivation and growth characteristics of a diverse group of oligotrophic marine gammaproteobacteria. Appl Environ Microbiol 70:432-440. http://dx.doi.org/10.1128/AEM.70.1.432-440.2004
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 432-440
-
-
Cho, J.C.1
Giovannoni, S.J.2
-
25
-
-
84880919986
-
High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series study site by phylogenetic placement of pyrosequences
-
Vergin KL, Beszteri B, Monier A, Thrash J, Temperton B, Treusch AH, Kilpert F, Worden AZ, Giovannoni SJ. 2013. High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series study site by phylogenetic placement of pyrosequences. ISME J 7:1322-1332. http:// dx.doi.org/10.1038/ismej.2013.32
-
(2013)
ISME J
, vol.7
, pp. 1322-1332
-
-
Vergin, K.L.1
Beszteri, B.2
Monier, A.3
Thrash, J.4
Temperton, B.5
Treusch, A.H.6
Kilpert, F.7
Worden, A.Z.8
Giovannoni, S.J.9
-
26
-
-
84868369211
-
Streamlining and core genome conservation among highly divergent members of the SAR11 clade
-
Grote J, Thrash JC, Huggett MJ. 2012. Streamlining and core genome conservation among highly divergent members of the SAR11 clade. mBio 3:-e00252-12. http://dx.doi.org/10.1128/mBio.00252-12
-
(2012)
mBio
, vol.3
-
-
Grote, J.1
Thrash, J.C.2
Huggett, M.J.3
-
27
-
-
84951567908
-
Expansion of cultured bacterial diversity by large-scale dilution-to-extinction culturing from a single seawater sample
-
Yang SJ, Kang I, Cho JC. 2016. Expansion of cultured bacterial diversity by large-scale dilution-to-extinction culturing from a single seawater sample. Microb Ecol 71:29-43. http://dx.doi.org/10.1007/s00248-015-0695-3
-
(2016)
Microb Ecol
, vol.71
, pp. 29-43
-
-
Yang, S.J.1
Kang, I.2
Cho, J.C.3
-
28
-
-
84861117173
-
Microbial scout hypothesis and microbial discovery
-
Buerger S, Spoering A, Gavrish E, Leslin C, Ling L, Epstein SS. 2012. Microbial scout hypothesis and microbial discovery. Appl Environ Microbiol 78:3229-3233. http://dx.doi.org/10.1128/AEM.07308-11
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 3229-3233
-
-
Buerger, S.1
Spoering, A.2
Gavrish, E.3
Leslin, C.4
Ling, L.5
Epstein, S.S.6
-
29
-
-
34547433545
-
Global patterns in bacterial diversity
-
Lozupone CA, Knight R. 2007. Global patterns in bacterial diversity. Proc Natl Acad Sci U S A 104:11436-11440. http://dx.doi.org/10.1073/ pnas.0611525104
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 11436-11440
-
-
Lozupone, C.A.1
Knight, R.2
-
30
-
-
69749086719
-
Infrequent marine-freshwater transitions in the microbial world
-
Logares R, Bråte J, Bertilsson S, Clasen JL, Shalchian-Tabrizi K, Rengefors K. 2009. Infrequent marine-freshwater transitions in the microbial world. Trends Microbiol 17:414-422. http://dx.doi.org/10.1016/ j.tim.2009.05.010
-
(2009)
Trends Microbiol
, vol.17
, pp. 414-422
-
-
Logares, R.1
Bråte, J.2
Bertilsson, S.3
Clasen, J.L.4
Shalchian-Tabrizi, K.5
Rengefors, K.6
-
31
-
-
1642376424
-
Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time
-
Crump BC, Hopkinson CS, Sogin ML, Hobbie JE. 2004. Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time. Appl Environ Microbiol 70: 1494-1505. http://dx.doi.org/10.1128/AEM.70.3.1494-1505.2004
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1494-1505
-
-
Crump, B.C.1
Hopkinson, C.S.2
Sogin, M.L.3
Hobbie, J.E.4
-
32
-
-
84857117285
-
Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient
-
Fortunato CS, Herfort L, Zuber P, Baptista AM, Crump BC. 2012. Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient. ISME J 6:554-563. http:// dx.doi.org/10.1038/ismej.2011.135
-
(2012)
ISME J
, vol.6
, pp. 554-563
-
-
Fortunato, C.S.1
Herfort, L.2
Zuber, P.3
Baptista, A.M.4
Crump, B.C.5
-
33
-
-
84897894862
-
Functional tradeoffs underpin salinity-driven divergence in microbial community composition
-
Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, Andersson AF, Tenney A, Lundin D, Tovchigrechko A, Nylander JAA, Brami D, Badger JH, Allen AE, Rusch DB, Hoffman J, Norrby E, Friedman R, Pinhassi J, Venter JC, Bergman B. 2014. Functional tradeoffs underpin salinity-driven divergence in microbial community composition. PLoS One 9:e89549. http://dx.doi.org/10.1371/journal.pone.0089549
-
(2014)
PLoS One
, vol.9
-
-
Dupont, C.L.1
Larsson, J.2
Yooseph, S.3
Ininbergs, K.4
Goll, J.5
Asplund-Samuelsson, J.6
McCrow, J.P.7
Celepli, N.8
Allen, L.Z.9
Ekman, M.10
Lucas, A.J.11
Hagström, Å.12
Thiagarajan, M.13
Brindefalk, B.14
Richter, A.R.15
Andersson, A.F.16
Tenney, A.17
Lundin, D.18
Tovchigrechko, A.19
Nylander, J.A.A.20
Brami, D.21
Badger, J.H.22
Allen, A.E.23
Rusch, D.B.24
Hoffman, J.25
Norrby, E.26
Friedman, R.27
Pinhassi, J.28
Venter, J.C.29
Bergman, B.30
more..
-
34
-
-
0033056228
-
Phylogeny of actinobacteria small subunit (SSU) rRNA gene clones recovered from marine bacterioplankton
-
Rappé MS, Gordon DA, Vergin KL, Giovannoni SJ. 1999. Phylogeny of actinobacteria small subunit (SSU) rRNA gene clones recovered from marine bacterioplankton. Syst Appl Microbiol 22:106-112. http:// dx.doi.org/10.1016/S0723-2020(99)80033-2
-
(1999)
Syst Appl Microbiol
, vol.22
, pp. 106-112
-
-
Rappé, M.S.1
Gordon, D.A.2
Vergin, K.L.3
Giovannoni, S.J.4
-
35
-
-
0035210708
-
Isolation of bacteria and 16S rDNAs from Lake Vostok accretion ice
-
Christner BC, Mosley-Thompson E, Thompson LG, Reeve JN. 2001. Isolation of bacteria and 16S rDNAs from Lake Vostok accretion ice. Environ Microbiol 3:570-577. http://dx.doi.org/10.1046/j.1462-2920.2001.00226.x
-
(2001)
Environ Microbiol
, vol.3
, pp. 570-577
-
-
Christner, B.C.1
Mosley-Thompson, E.2
Thompson, L.G.3
Reeve, J.N.4
-
36
-
-
84871808499
-
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
-
Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glockner FO. 2013. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res 41:e1. http://dx.doi.org/10.1093/nar/gks808
-
(2013)
Nucleic Acids Res
, vol.41
, pp. e1
-
-
Klindworth, A.1
Pruesse, E.2
Schweer, T.3
Peplies, J.4
Quast, C.5
Horn, M.6
Glockner, F.O.7
-
37
-
-
84863981120
-
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
-
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M, Gormley N, Gilbert JA, Smith G, Knight R. 2012. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J 6:1621-1624. http://dx.doi.org/10.1038/ismej.2012.8
-
(2012)
ISME J
, vol.6
, pp. 1621-1624
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Huntley, J.5
Fierer, N.6
Owens, S.M.7
Betley, J.8
Fraser, L.9
Bauer, M.10
Gormley, N.11
Gilbert, J.A.12
Smith, G.13
Knight, R.14
-
38
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537-7541. http://dx.doi.org/10.1128/AEM.01541-09
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
39
-
-
37549027613
-
Silva: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO. 2007. Silva: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35:7188-7196. http://dx.doi.org/10.1093/nar/ gkm864
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glockner, F.O.7
-
40
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. 2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27:2194-2200. http://dx.doi.org/10.1093/bioinformatics/btr381
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
41
-
-
0030305457
-
R: a language for data analysis and g r a p h i c s
-
Ihaka R, Gentleman R. 1996. R: a language for data analysis and g r a p h i c s . J Comput Graph S t a t 5 :299-314. h t t p s: / / www.stat.auckland.ac.nz/~ihaka/downloads/R-paper.pdf
-
(1996)
J Comput Graph S t a t
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.2
-
43
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797. http:// dx.doi.org/10.1093/nar/gkh340
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
44
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552. http://dx.doi.org/10.1093/oxfordjournals.molbev.a026334
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
45
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP. 2010. FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One 5:e9490. http://dx.doi.org/10.1371/journal.pone.0009490
-
(2010)
PLoS One
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
46
-
-
71749099862
-
phyloXML: XML for evolutionary biology and comparative genomics
-
Han MV, Zmasek CM. 2009. phyloXML: XML for evolutionary biology and comparative genomics. BMC Bioinformatics 10:356. http:// dx.doi.org/10.1186/1471-2105-10-356
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 356
-
-
Han, M.V.1
Zmasek, C.M.2
|