메뉴 건너뛰기




Volumn 22, Issue 1, 1999, Pages 106-112

Phylogeny of Actinobacteria small subunit (SSU) rRNA gene clones recovered from marine bacterioplankton

Author keywords

Actinobacteria; Bacterioplankton; Molecular phylogeny; SSU rRNA genes

Indexed keywords

RIBOSOME RNA; SEA WATER;

EID: 0033056228     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0723-2020(99)80033-2     Document Type: Article
Times cited : (46)

References (27)
  • 3
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • BORNEMAN, J., TRIPLETT, E. W.: Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63, 2647-2653 (1997).
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 4
    • 0001091599 scopus 로고
    • Sphaerobacter thermophilus gen. nov. spec. nov. a deeply rooting member of the actinomycetes subdivision isolated from thermophilically treated sewage sludge
    • DEMHARTER, W., HENSEL, R., SMIDA, J., STACKEBRANDT, E.: Sphaerobacter thermophilus gen. nov. spec. nov. a deeply rooting member of the actinomycetes subdivision isolated from thermophilically treated sewage sludge. Syst. Appl. Microbiol. 11, 261-266 (1989).
    • (1989) Syst. Appl. Microbiol. , vol.11 , pp. 261-266
    • Demharter, W.1    Hensel, R.2    Smida, J.3    Stackebrandt, E.4
  • 5
    • 0030762263 scopus 로고    scopus 로고
    • Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils
    • FELSKE, A., RHEIMS, H., WOLTERINK, A., STACKEBRANDT, E., AKKERMANS, A. D. L.: Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils. Microbiol. 143, 2983-2989 (1997).
    • (1997) Microbiol. , vol.143 , pp. 2983-2989
    • Felske, A.1    Rheims, H.2    Wolterink, A.3    Stackebrandt, E.4    Akkermans, A.D.L.5
  • 6
    • 0027336561 scopus 로고
    • Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans
    • FUHRMAN, J. A., MCCALLUM, K., DAVIS, A. A.: Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans. Appl. Environ. Microbiol. 59, 1294-1302 (1993).
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1294-1302
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 7
    • 0028790653 scopus 로고
    • Inferring phylogenies from DNA sequences of unequal base compositions
    • GALTIER, N., GOUY, M.: Inferring phylogenies from DNA sequences of unequal base compositions. Proc. Natl. Acad. Sci. USA 92, 11317-11321 (1995).
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 11317-11321
    • Galtier, N.1    Gouy, M.2
  • 8
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLOWIN: Two graphic tools for sequence alignment and molecular phylogeny
    • GALTIER, N., GOUY, M., GAUTIER, C.: SEAVIEW and PHYLOWIN: two graphic tools for sequence alignment and molecular phylogeny. CABIOS 12, 543-548 (1996).
    • (1996) CABIOS , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 9
    • 0006174575 scopus 로고    scopus 로고
    • Ribosomal RNA and the evolution of bacterial diversity
    • (D. M. ROBERTS, P. SHARP, G. ALDERSON M. COLLINS, eds.) Cambridge, Cambridge University Press
    • GIOVANNONI, S. J., RAPPÉ, M. S., GORDON, D., URBACH, E., SUZUKI, M., FIELD, K. G.: Ribosomal RNA and the evolution of bacterial diversity, pp. 63-85. In: Evolution of microbial life (D. M. ROBERTS, P. SHARP, G. ALDERSON M. COLLINS, eds.) Cambridge, Cambridge University Press, 1996.
    • (1996) Evolution of Microbial Life , pp. 63-85
    • Giovannoni, S.J.1    Rappé, M.S.2    Gordon, D.3    Urbach, E.4    Suzuki, M.5    Field, K.G.6
  • 10
    • 0029667158 scopus 로고    scopus 로고
    • Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans
    • GORDON, D. A., GIOVANNONI, S. J.: Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans. Appl. Environ. Microbiol. 62, 1171-1177 (1996).
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1171-1177
    • Gordon, D.A.1    Giovannoni, S.J.2
  • 11
    • 0029660135 scopus 로고    scopus 로고
    • Phylogenetic analysis of the bacterial communities in marine sediments
    • GRAY, J. P., HERWIG, R. P.: Phylogenetic analysis of the bacterial communities in marine sediments. Appl. Environ. Microbiol. 62, 4049-4059 (1996).
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4049-4059
    • Gray, J.P.1    Herwig, R.P.2
  • 12
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • (H. H. MUNRO, ed.) New York, Academic Press
    • JUKES, T. H., CANTOR, C. R.: Evolution of protein molecules, pp. 21-132. In: Mammalian protein metabolism (H. H. MUNRO, ed.) New York, Academic Press, 1969.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 13
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
    • KUSKE, C. R., BARNS, S. M., BUSCH, J. D.: Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl. Environ. Microbiol. 63, 3614-3621 (1997).
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Busch, J.D.3
  • 14
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • LIESACK, W., STACKEBRANDT, E.: Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174, 5072-5078 (1992).
    • (1992) J. Bacteriol. , vol.174 , pp. 5072-5078
    • Liesack, W.1    Stackebrandt, E.2
  • 15
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • LOCKHART, P. J., STEEL, M. A., HENDY, M. D., PENNY, D.: Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11, 605-612 (1994).
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Hendy, M.D.3    Penny, D.4
  • 17
    • 0031395502 scopus 로고    scopus 로고
    • Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina
    • RAPPÉ, M. S., KEMP, P. F., GIOVANNONI, S. J.: Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina. Limnol. Oceanogr. 42, 811-826 (1997).
    • (1997) Limnol. Oceanogr. , vol.42 , pp. 811-826
    • Rappé, M.S.1    Kemp, P.F.2    Giovannoni, S.J.3
  • 18
    • 0031964656 scopus 로고    scopus 로고
    • Phylogenetic diversity of ultraplankton plastid SSU rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States
    • RAPPÉ, M. S., SUZUKI, M. T., VERGIN, K., GIOVANNONI, S. J.: Phylogenetic diversity of ultraplankton plastid SSU rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States. Appl. Environ. Microbiol. 64, 294-303 (1998).
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 294-303
    • Rappé, M.S.1    Suzuki, M.T.2    Vergin, K.3    Giovannoni, S.J.4
  • 19
    • 0029853626 scopus 로고    scopus 로고
    • Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations
    • RHEIMS, H., SPRÖER, C., RAINEY, F. A., STACKEBRANDT, E.: Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations. Microbiol. 142, 2863-2870 (1996).
    • (1996) Microbiol. , vol.142 , pp. 2863-2870
    • Rheims, H.1    Spröer, C.2    Rainey, F.A.3    Stackebrandt, E.4
  • 20
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing trees
    • SAITOU, N., NEI, M.: The neighbor-joining method: a new method for reconstructing trees. Mol. Biol. Evol. 4, 406-425 (1987).
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 22
    • 0027441283 scopus 로고
    • Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rRNA analysis
    • STACKEBRANDT, E., LIESACK, W., GÖEBEL, B. M.: Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rRNA analysis. FASEB J. 7, 232-236 (1993).
    • (1993) FASEB J. , vol.7 , pp. 232-236
    • Stackebrandt, E.1    Liesack, W.2    Göebel, B.M.3
  • 23
    • 0002211974 scopus 로고
    • Partial and complete 16S rDNA sequences, their use in generation of 16S rDNA phylogenetic trees and their implications in molecular ecological studies
    • (A. D. L. AKKERMANS, J. D. VAN ELSAS, F. J. DE BRUIJN, eds.) Dordrecht, Kluwer
    • STACKEBRANDT, E., RAINEY, F. A.: Partial and complete 16S rDNA sequences, their use in generation of 16S rDNA phylogenetic trees and their implications in molecular ecological studies, pp. 3.1.1: 1-17. In: Molecular Microbial Ecology Manual (A. D. L. AKKERMANS, J. D. VAN ELSAS, F. J. DE BRUIJN, eds.) Dordrecht, Kluwer, 1995.
    • (1995) Molecular Microbial Ecology Manual , pp. 1-17
    • Stackebrandt, E.1    Rainey, F.A.2
  • 24
    • 0030893495 scopus 로고    scopus 로고
    • Proposal for a new hierarchic classification system, Actinobacteria classis nov
    • STACKEBRANDT, E., RAINEY, F. A., WARD-RAINEY, N. L.: Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int. J. System. Bacteriol. 47, 479-491 (1997).
    • (1997) Int. J. System. Bacteriol. , vol.47 , pp. 479-491
    • Stackebrandt, E.1    Rainey, F.A.2    Ward-Rainey, N.L.3
  • 26
    • 0028983870 scopus 로고
    • Molecular phylogenetic analysis of a soil microbial community in a soybean field
    • UEDA, T., SUGA, Y., MATSUGUCHI, T.: Molecular phylogenetic analysis of a soil microbial community in a soybean field. Eur. J. Soil Sci. 46, 415-421 (1995).
    • (1995) Eur. J. Soil Sci. , vol.46 , pp. 415-421
    • Ueda, T.1    Suga, Y.2    Matsuguchi, T.3
  • 27
    • 0031436948 scopus 로고    scopus 로고
    • Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA
    • ZHOU, J., DAVEY, M. E., FIGUERAS, J. B., RIVKINA, E., GILICHINSKY, D., TIEDJE, J. M.: Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiol. 143, 3913-3919 (1997).
    • (1997) Microbiol. , vol.143 , pp. 3913-3919
    • Zhou, J.1    Davey, M.E.2    Figueras, J.B.3    Rivkina, E.4    Gilichinsky, D.5    Tiedje, J.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.