메뉴 건너뛰기




Volumn 17, Issue 5, 2016, Pages 298-304

Identification of genetic variants associated with susceptibility to West Nile virus neuroinvasive disease

Author keywords

[No Author keywords available]

Indexed keywords

CD83 ANTIGEN; HLA A ANTIGEN; HLA DQB1 ANTIGEN; SPACER DNA; CACNA1H PROTEIN, HUMAN; CALCIUM CHANNEL T TYPE; HERC5 PROTEIN, HUMAN; HLA DQ ANTIGEN; HLA-DQB1 ANTIGEN; IMMUNOGLOBULIN; JARID2 PROTEIN, HUMAN; LEUKOCYTE ANTIGEN; MEMBRANE PROTEIN; POLYCOMB REPRESSIVE COMPLEX 2; REPRESSOR PROTEIN; SIGNAL PEPTIDE; TFCP2L1 PROTEIN, HUMAN;

EID: 84966570032     PISSN: 14664879     EISSN: 14765470     Source Type: Journal    
DOI: 10.1038/gene.2016.21     Document Type: Article
Times cited : (13)

References (46)
  • 1
    • 84880308373 scopus 로고    scopus 로고
    • West nile virus: Review of the literature
    • Petersen LR, Brault AC, Nasci RS. West Nile virus: review of the literature. JAMA 2013; 310: 308-315.
    • (2013) JAMA , vol.310 , pp. 308-315
    • Petersen, L.R.1    Brault, A.C.2    Nasci, R.S.3
  • 2
    • 84979290641 scopus 로고    scopus 로고
    • (accessed 3 June)
    • West Nile http://www.cdc.gov/westnile/ (accessed 3 June 2015).
    • (2015)
  • 3
    • 0035963919 scopus 로고    scopus 로고
    • Epidemic west nile encephalitis, New York, 1999: Results of a household-based seroepidemiological survey
    • Mostashari F, Bunning ML, Kitsutani PT, Singer DA, Nash D, Cooper MJ et al. Epidemic West Nile encephalitis, New York, 1999: results of a household-based seroepidemiological survey. Lancet 2001; 358: 261-264.
    • (2001) Lancet , vol.358 , pp. 261-264
    • Mostashari, F.1    Bunning, M.L.2    Kitsutani, P.T.3    Singer, D.A.4    Nash, D.5    Cooper, M.J.6
  • 5
    • 33745937883 scopus 로고    scopus 로고
    • Follow-up of 2003 human west nile virus infections, denver, Colorado
    • Patnaik JL, Harmon H, Vogt RL. Follow-up of 2003 human West Nile virus infections, Denver, Colorado. Emerging Infect Dis 2006; 12: 1129-1131.
    • (2006) Emerging Infect Dis , vol.12 , pp. 1129-1131
    • Patnaik, J.L.1    Harmon, H.2    Vogt, R.L.3
  • 6
    • 33646084389 scopus 로고    scopus 로고
    • West nile virus disease: A descriptive study of 228 patients hospitalized in a 4-county region of Colorado in 2003
    • Bode AV, Sejvar JJ, Pape WJ, Campbell GL, Marfin AA. West Nile virus disease: a descriptive study of 228 patients hospitalized in a 4-county region of Colorado in 2003. Clin Infect Dis 2006; 42: 1234-1240.
    • (2006) Clin Infect Dis , vol.42 , pp. 1234-1240
    • Bode, A.V.1    Sejvar, J.J.2    Pape, W.J.3    Campbell, G.L.4    Marfin, A.A.5
  • 7
    • 0034847301 scopus 로고    scopus 로고
    • Clinical findings of west nile virus infection in hospitalized patients, New York and New Jersey, 2000
    • Weiss D, Carr D, Kellachan J, Tan C, Phillips M, Bresnitz E et al. Clinical findings of West Nile virus infection in hospitalized patients, New York and New Jersey, 2000. Emerging Infect Dis 2001; 7: 654-658.
    • (2001) Emerging Infect Dis , vol.7 , pp. 654-658
    • Weiss, D.1    Carr, D.2    Kellachan, J.3    Tan, C.4    Phillips, M.5    Bresnitz, E.6
  • 8
    • 0035859233 scopus 로고    scopus 로고
    • The outbreak of west nile virus infection in the New York city area in 1999
    • Nash D, Mostashari F, Fine A, Miller J, O'Leary D, Murray K et al. The outbreak of West Nile virus infection in the New York City area in 1999. N Engl J Med 2001; 344: 1807-1814.
    • (2001) N Engl J Med , vol.344 , pp. 1807-1814
    • Nash, D.1    Mostashari, F.2    Fine, A.3    Miller, J.4    O'Leary, D.5    Murray, K.6
  • 9
    • 37049034095 scopus 로고    scopus 로고
    • Risk factors for west nile virus neuroinvasive disease, California, 2005
    • Jean CM, Honarmand S, Louie JK, Glaser CA. Risk factors for West Nile virus neuroinvasive disease, California, 2005. Emerging Infect Dis 2007; 13: 1918-1920.
    • (2007) Emerging Infect Dis , vol.13 , pp. 1918-1920
    • Jean, C.M.1    Honarmand, S.2    Louie, J.K.3    Glaser, C.A.4
  • 10
    • 0037015076 scopus 로고    scopus 로고
    • Host genetic variability and west nile virus susceptibility
    • Samuel CE. Host genetic variability and West Nile virus susceptibility. Proc Natl Acad Sci USA 2002; 99: 11555-11557.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 11555-11557
    • Samuel, C.E.1
  • 12
    • 61449157813 scopus 로고    scopus 로고
    • Genetic variation in OAS1 is a risk factor for initial infection with west nile virus in man
    • Lim JK, Lisco A, McDermott DH, Huynh L, Ward JM, Johnson B et al. Genetic variation in OAS1 is a risk factor for initial infection with West Nile virus in man. PLoS Pathog 2009; 5: e1000321.
    • (2009) PLoS Pathog , vol.5 , pp. e1000321
    • Lim, J.K.1    Lisco, A.2    McDermott, D.H.3    Huynh, L.4    Ward, J.M.5    Johnson, B.6
  • 13
    • 27744547954 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms in genes for 2′-5′-oligoadenylate synthetase and RNase L inpatients hospitalized with west nile virus infection
    • Yakub I, Lillibridge KM, Moran A, Gonzalez OY, Belmont J, Gibbs RA et al. Single nucleotide polymorphisms in genes for 2′-5′-oligoadenylate synthetase and RNase L inpatients hospitalized with West Nile virus infection. J Infect Dis 2005; 192: 1741-1748.
    • (2005) J Infect Dis , vol.192 , pp. 1741-1748
    • Yakub, I.1    Lillibridge, K.M.2    Moran, A.3    Gonzalez, O.Y.4    Belmont, J.5    Gibbs, R.A.6
  • 14
    • 75649111972 scopus 로고    scopus 로고
    • CCR5 deficiency is a risk factor for early clinical manifestations of west nile virus infection but not for viral transmission
    • Lim JK, McDermott DH, Lisco A, Foster GA, Krysztof D, Follmann D et al. CCR5 deficiency is a risk factor for early clinical manifestations of West Nile virus infection but not for viral transmission. J Infect Dis 2010; 201: 178-185.
    • (2010) J Infect Dis , vol.201 , pp. 178-185
    • Lim, J.K.1    McDermott, D.H.2    Lisco, A.3    Foster, G.A.4    Krysztof, D.5    Follmann, D.6
  • 17
    • 80052425321 scopus 로고    scopus 로고
    • Genetic variants and susceptibility to neurological complications following west nile virus infection
    • Loeb M, Eskandarian S, Rupp M, Fishman N, Gasink L, Patterson J et al. Genetic variants and susceptibility to neurological complications following West Nile virus infection. J Infect Dis 2011; 204: 1031-1037.
    • (2011) J Infect Dis , vol.204 , pp. 1031-1037
    • Loeb, M.1    Eskandarian, S.2    Rupp, M.3    Fishman, N.4    Gasink, L.5    Patterson, J.6
  • 18
    • 84863556835 scopus 로고    scopus 로고
    • Evolution and functional impact of rare coding variation from deep sequencing of human exomes
    • Tennessen JA, Bigham AW, O'Connor TD, Fu W, Kenny EE, Gravel S et al. Evolution and functional impact of rare coding variation from deep sequencing of human exomes. Science 2012; 337: 64-69.
    • (2012) Science , vol.337 , pp. 64-69
    • Tennessen, J.A.1    Bigham, A.W.2    O'Connor, T.D.3    Fu, W.4    Kenny, E.E.5    Gravel, S.6
  • 19
    • 84863541347 scopus 로고    scopus 로고
    • An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people
    • Nelson MR, Wegmann D, Ehm MG, Kessner D, St Jean P, Verzilli C et al. An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people. Science 2012; 337: 100-104.
    • (2012) Science , vol.337 , pp. 100-104
    • Nelson, M.R.1    Wegmann, D.2    Ehm, M.G.3    Kessner, D.4    St Jean, P.5    Verzilli, C.6
  • 21
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1,092 human genomes
    • 1000 Genomes Project Consortium, Abecasis GR, Auton A, Brooks LD, De Pristo MA, Durbin RM et al. An integrated map of genetic variation from 1,092 human genomes. Nature 2012; 491: 56-65.
    • (2012) Nature , vol.491 , pp. 56-65
    • Abecasis, G.R.1    Auton, A.2    Brooks, L.D.3    De Pristo, M.A.4    Durbin, R.M.5
  • 23
    • 73349138875 scopus 로고    scopus 로고
    • Exome sequencing makes medical genomics a reality
    • Biesecker LG. Exome sequencing makes medical genomics a reality. Nat Genet 2010; 42: 13-14.
    • (2010) Nat Genet , vol.42 , pp. 13-14
    • Biesecker, L.G.1
  • 24
    • 84864942403 scopus 로고    scopus 로고
    • Optimal unified approach for rare-variant association testing with application to smallsample case-control whole-exome sequencing studies
    • Lee S, Emond MJ, Bamshad MJ, Barnes KC, Rieder MJ, Nickerson DA et al. Optimal unified approach for rare-variant association testing with application to smallsample case-control whole-exome sequencing studies. Am J Hum Genet 2012; 91: 224-237.
    • (2012) Am J Hum Genet , vol.91 , pp. 224-237
    • Lee, S.1    Emond, M.J.2    Bamshad, M.J.3    Barnes, K.C.4    Rieder, M.J.5    Nickerson, D.A.6
  • 25
    • 84864397328 scopus 로고    scopus 로고
    • Exome sequencing of extreme phenotypes identifies DCTN4 as a modifier of chronic Pseudomonas aeruginosa infection in cystic fibrosis
    • Emond MJ, Louie T, Emerson J, Zhao W, Mathias RA, Knowles MR et al. Exome sequencing of extreme phenotypes identifies DCTN4 as a modifier of chronic Pseudomonas aeruginosa infection in cystic fibrosis. Nat Genet 2012; 44: 886-889.
    • (2012) Nat Genet , vol.44 , pp. 886-889
    • Emond, M.J.1    Louie, T.2    Emerson, J.3    Zhao, W.4    Mathias, R.A.5    Knowles, M.R.6
  • 26
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • Howie BN, Donnelly P, Marchini J. A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet 2009; 5: e1000529.
    • (2009) PLoS Genet , vol.5 , pp. e1000529
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 27
    • 80052877813 scopus 로고    scopus 로고
    • Performance of genotype imputation for rare variants identified in exons and flanking regions of genes
    • Li L, Li Y, Browning SR, Browning BL, Slater AJ, Kong X et al. Performance of genotype imputation for rare variants identified in exons and flanking regions of genes. PLoS One 2011; 6: e24945.
    • (2011) PLoS One , vol.6 , pp. e24945
    • Li, L.1    Li, Y.2    Browning, S.R.3    Browning, B.L.4    Slater, A.J.5    Kong, X.6
  • 29
    • 44149127481 scopus 로고    scopus 로고
    • PGA: Power calculator for case-control genetic association analyses
    • Menashe I, Rosenberg PS, Chen BE. PGA: power calculator for case-control genetic association analyses. BMC Genet 2008; 9: 36.
    • (2008) BMC Genet , vol.9 , pp. 36
    • Menashe, I.1    Rosenberg, P.S.2    Chen, B.E.3
  • 30
    • 84864351336 scopus 로고    scopus 로고
    • Network analysis of transcriptional regulation in response to intramuscular interferon-β-1a multiple sclerosis treatment
    • Hecker M, Goertsches RH, Fatum C, Koczan D, Thiesen H-J, Guthke R et al. Network analysis of transcriptional regulation in response to intramuscular interferon-β-1a multiple sclerosis treatment. Pharmacogenomics J 2012; 12: 360-360.
    • (2012) Pharmacogenomics J , vol.12 , pp. 360
    • Hecker, M.1    Goertsches, R.H.2    Fatum, C.3    Koczan, D.4    Thiesen, H.-J.5    Guthke, R.6
  • 31
    • 84870326659 scopus 로고    scopus 로고
    • Identification of a susceptibility locus in STAT4 for behçet's disease in han Chinese in a genome-wide association study
    • Hou S, Yang Z, Du L, Jiang Z, Shu Q, Chen Y et al. Identification of a susceptibility locus in STAT4 for Behçet's disease in Han Chinese in a genome-wide association study. Arthritis Rheum 2012; 64: 4104-4113.
    • (2012) Arthritis Rheum , vol.64 , pp. 4104-4113
    • Hou, S.1    Yang, Z.2    Du, L.3    Jiang, Z.4    Shu, Q.5    Chen, Y.6
  • 32
    • 84876940954 scopus 로고    scopus 로고
    • T-type calcium channels in burst-firing, network synchrony, and epilepsy
    • Cain SM, Snutch TP. T-type calcium channels in burst-firing, network synchrony, and epilepsy. Biochim Biophys Acta 2013; 1828: 1572-1578.
    • (2013) Biochim Biophys Acta , vol.1828 , pp. 1572-1578
    • Cain, S.M.1    Snutch, T.P.2
  • 33
    • 84861598099 scopus 로고    scopus 로고
    • Extremely low-coverage sequencing and imputation increases power for genome-wide association studies
    • Pasaniuc B, Rohland N, McLaren PJ, Garimella K, Zaitlen N, Li H et al. Extremely low-coverage sequencing and imputation increases power for genome-wide association studies. Nat Genet 2012; 44: 631-635.
    • (2012) Nat Genet , vol.44 , pp. 631-635
    • Pasaniuc, B.1    Rohland, N.2    McLaren, P.J.3    Garimella, K.4    Zaitlen, N.5    Li, H.6
  • 35
    • 84864928152 scopus 로고    scopus 로고
    • Exome sequencing followed by large-scale genotyping fails to identify single rare variants of large effect in idiopathic generalized epilepsy
    • Heinzen EL, Depondt C, Cavalleri GL, Ruzzo EK, Walley NM, Need AC et al. Exome sequencing followed by large-scale genotyping fails to identify single rare variants of large effect in idiopathic generalized epilepsy. Am J Hum Genet 2012; 91: 293-302.
    • (2012) Am J Hum Genet , vol.91 , pp. 293-302
    • Heinzen, E.L.1    Depondt, C.2    Cavalleri, G.L.3    Ruzzo, E.K.4    Walley, N.M.5    Need, A.C.6
  • 36
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009; 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 38
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • De Pristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 2011; 43: 491-498.
    • (2011) Nat Genet , vol.43 , pp. 491-498
    • De Pristo, M.A.1    Banks, E.2    Poplin, R.3    Garimella, K.V.4    Maguire, J.R.5    Hartl, C.6
  • 39
    • 84862506964 scopus 로고    scopus 로고
    • A program for annotating and predicting the effects of single nucleotide polymorphisms, snp eff: SNPs in the genome of drosophila melanogaster strain w1118; iso-2; iso-3
    • Cingolani P, Platts A, Wang LL, Coon M, Nguyen T, Wang L et al. A program for annotating and predicting the effects of single nucleotide polymorphisms, Snp Eff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (Austin) 2012; 6: 80-92.
    • (2012) Fly (Austin) , vol.6 , pp. 80-92
    • Cingolani, P.1    Platts, A.2    Wang, L.L.3    Coon, M.4    Nguyen, T.5    Wang, L.6
  • 40
    • 84979211880 scopus 로고    scopus 로고
    • (accessed 30 May)
    • Exome Variant Server. Available at http://evs.gs.washington.edu/EVS/ (accessed 30 May 2015).
    • (2015)
  • 41
    • 84979211881 scopus 로고    scopus 로고
    • (accessed 30 May)
    • NIEHS EGP - Exome Project. Available at http://egp.gs.washington.edu/ (accessed 30 May 2015).
    • (2015)
  • 43
  • 44
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • Cardon LR, Craddock N, Deloukas P, Duncanson A, Kwiatkowski DP, McCarthy MI et al. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 2007; 447: 661-678.
    • (2007) Nature , vol.447 , pp. 661-678
    • Cardon, L.R.1    Craddock, N.2    Deloukas, P.3    Duncanson, A.4    Kwiatkowski, D.P.5    McCarthy, M.I.6
  • 45
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 2005; 21: 263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.