-
1
-
-
84868336049
-
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease
-
Jostins L, Ripke S, Weersma RK, et al. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature 2012;491:119-24.
-
(2012)
Nature
, vol.491
, pp. 119-124
-
-
Jostins, L.1
Ripke, S.2
Weersma, R.K.3
-
2
-
-
34547176642
-
Unravelling the pathogenesis of inflammatory bowel disease
-
Xavier RJ, Podolsky DK. Unravelling the pathogenesis of inflammatory bowel disease. Nature 2007;448:427-34.
-
(2007)
Nature
, vol.448
, pp. 427-434
-
-
Xavier, R.J.1
Podolsky, D.K.2
-
3
-
-
0017659707
-
The role of the intestinal microflora in experimental colitis
-
Onderdonk AB, Hermos JA, Bartlett JG. The role of the intestinal microflora in experimental colitis. Am J Clin Nutr 1977;30:1819-25.
-
(1977)
Am J Clin Nutr
, vol.30
, pp. 1819-1825
-
-
Onderdonk, A.B.1
Hermos, J.A.2
Bartlett, J.G.3
-
4
-
-
0032412057
-
Resident enteric bacteria are necessary for development of spontaneous colitis and immune system activation in interleukin-10-deficient mice
-
Sellon RK, Tonkonogy S, Schultz M, et al. Resident enteric bacteria are necessary for development of spontaneous colitis and immune system activation in interleukin-10-deficient mice. Infect Immun 1998;66:5224-31.
-
(1998)
Infect Immun
, vol.66
, pp. 5224-5231
-
-
Sellon, R.K.1
Tonkonogy, S.2
Schultz, M.3
-
5
-
-
0025887076
-
Effect of faecal stream diversion on recurrence of Crohn's disease in the neoterminal ileum
-
Rutgeerts P, Geboes K, Peeters M, et al. Effect of faecal stream diversion on recurrence of Crohn's disease in the neoterminal ileum. Lancet 1991;338:771-4.
-
(1991)
Lancet
, vol.338
, pp. 771-774
-
-
Rutgeerts, P.1
Geboes, K.2
Peeters, M.3
-
6
-
-
0037425743
-
Gut flora in health and disease
-
Guarner F, Malagelada JR. Gut flora in health and disease. Lancet 2003;361:512-9.
-
(2003)
Lancet
, vol.361
, pp. 512-519
-
-
Guarner, F.1
Malagelada, J.R.2
-
7
-
-
67349250428
-
The gut microbiota shapes intestinal immune responses during health and disease
-
Round JL, Mazmanian SK. The gut microbiota shapes intestinal immune responses during health and disease. Nat Rev Immunol 2009;9:313-23.
-
(2009)
Nat Rev Immunol
, vol.9
, pp. 313-323
-
-
Round, J.L.1
Mazmanian, S.K.2
-
8
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature 2012;486:207-14.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
10
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010;464:59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
-
11
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam M, Raes J, Pelletier E, et al. Enterotypes of the human gut microbiome. Nature 2011;473:174-80.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
-
12
-
-
84864722033
-
Gut microbiota composition correlates with diet and health in the elderly
-
Claesson MJ, Jeffery IB, Conde S, et al. Gut microbiota composition correlates with diet and health in the elderly. Nature 2012;488:178-84.
-
(2012)
Nature
, vol.488
, pp. 178-184
-
-
Claesson, M.J.1
Jeffery, I.B.2
Conde, S.3
-
13
-
-
84883110880
-
Richness of human gut microbiome correlates with metabolic markers
-
Le Chatelier E, Nielsen T, Qin J, et al. Richness of human gut microbiome correlates with metabolic markers. Nature 2013;500:541-6.
-
(2013)
Nature
, vol.500
, pp. 541-546
-
-
Le Chatelier, E.1
Nielsen, T.2
Qin, J.3
-
14
-
-
84865180569
-
Categorization of the gut microbiota: enterotypes or gradients?
-
Jeffery IB, Claesson MJ, O'Toole PW, et al. Categorization of the gut microbiota: enterotypes or gradients? Nat Rev Microbiol 2012;10:591-2.
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 591-592
-
-
Jeffery, I.B.1
Claesson, M.J.2
O'Toole, P.W.3
-
15
-
-
84870322666
-
Integrated metagenomics/ metaproteomics reveals human host-microbiota signatures of Crohn's disease
-
Erickson AR, Cantarel BL, Lamendella R, et al. Integrated metagenomics/ metaproteomics reveals human host-microbiota signatures of Crohn's disease. PLoS One 2012;7:e49138.
-
(2012)
PLoS One
, vol.7
, pp. e49138
-
-
Erickson, A.R.1
Cantarel, B.L.2
Lamendella, R.3
-
16
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
Frank DN, St Amand AL, Feldman RA, et al. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci USA 2007;104:13780-5.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 13780-13785
-
-
Frank, D.N.1
St Amand, A.L.2
Feldman, R.A.3
-
17
-
-
84896092821
-
The treatment-naive microbiome in new-onset Crohn's disease
-
Gevers D, Kugathasan S, Denson LA, et al. The treatment-naive microbiome in new-onset Crohn's disease. Cell Host Microbe 2014;15:382-92.
-
(2014)
Cell Host Microbe
, vol.15
, pp. 382-392
-
-
Gevers, D.1
Kugathasan, S.2
Denson, L.A.3
-
18
-
-
79953748870
-
Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives
-
Joossens M, Huys G, Cnockaert M, et al. Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives. Gut 2011;60:631-7.
-
(2011)
Gut
, vol.60
, pp. 631-637
-
-
Joossens, M.1
Huys, G.2
Cnockaert, M.3
-
19
-
-
79959961092
-
Twin study indicates loss of interaction between microbiota and mucosa of patients with ulcerative colitis
-
Lepage P, Hasler R, Spehlmann ME, et al. Twin study indicates loss of interaction between microbiota and mucosa of patients with ulcerative colitis. Gastroenterology 2011;141:227-36.
-
(2011)
Gastroenterology
, vol.141
, pp. 227-236
-
-
Lepage, P.1
Hasler, R.2
Spehlmann, M.E.3
-
20
-
-
84904048875
-
A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis
-
Machiels K, Joossens M, Sabino J, et al. A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis. Gut 2014;63:1275-83.
-
(2014)
Gut
, vol.63
, pp. 1275-1283
-
-
Machiels, K.1
Joossens, M.2
Sabino, J.3
-
21
-
-
30944466824
-
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
-
Manichanh C, Rigottier-Gois L, Bonnaud E, et al. Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Gut 2006;55:205-11.
-
(2006)
Gut
, vol.55
, pp. 205-211
-
-
Manichanh, C.1
Rigottier-Gois, L.2
Bonnaud, E.3
-
22
-
-
78649686679
-
A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes
-
Willing BP, Dicksved J, Halfvarson J, et al. A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology 2010;139:1844-54.
-
(2010)
Gastroenterology
, vol.139
, pp. 1844-1854
-
-
Willing, B.P.1
Dicksved, J.2
Halfvarson, J.3
-
23
-
-
33751556362
-
Abnormal microbiota composition in the ileocolonic mucosa of Crohn's disease patients as revealed by polymerase chain reaction-denaturing gradient gel electrophoresis
-
Martinez-Medina M, Aldeguer X, Gonzalez-Huix F, et al. Abnormal microbiota composition in the ileocolonic mucosa of Crohn's disease patients as revealed by polymerase chain reaction-denaturing gradient gel electrophoresis. Inflamm Bowel Dis 2006;12:1136-45.
-
(2006)
Inflamm Bowel Dis
, vol.12
, pp. 1136-1145
-
-
Martinez-Medina, M.1
Aldeguer, X.2
Gonzalez-Huix, F.3
-
24
-
-
70349488325
-
Low counts of Faecalibacterium prausnitzii in colitis microbiota
-
Sokol H, Seksik P, Furet JP, et al. Low counts of Faecalibacterium prausnitzii in colitis microbiota. Inflamm Bowel Dis 2009;15:1183-9.
-
(2009)
Inflamm Bowel Dis
, vol.15
, pp. 1183-1189
-
-
Sokol, H.1
Seksik, P.2
Furet, J.P.3
-
25
-
-
39649100206
-
Active Crohn's disease and ulcerative colitis can be specifically diagnosed and monitored based on the biostructure of the fecal flora
-
Swidsinski A, Loening-Baucke V, Vaneechoutte M, et al. Active Crohn's disease and ulcerative colitis can be specifically diagnosed and monitored based on the biostructure of the fecal flora. Inflamm Bowel Dis 2008;14:147-61.
-
(2008)
Inflamm Bowel Dis
, vol.14
, pp. 147-161
-
-
Swidsinski, A.1
Loening-Baucke, V.2
Vaneechoutte, M.3
-
26
-
-
66249129571
-
Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease
-
Willing B, Halfvarson J, Dicksved J, et al. Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease. Inflamm Bowel Dis 2009;15:653-60.
-
(2009)
Inflamm Bowel Dis
, vol.15
, pp. 653-660
-
-
Willing, B.1
Halfvarson, J.2
Dicksved, J.3
-
27
-
-
55949124035
-
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
-
Sokol H, Pigneur B, Watterlot L, et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci USA 2008;105:16731-6.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 16731-16736
-
-
Sokol, H.1
Pigneur, B.2
Watterlot, L.3
-
28
-
-
0031758230
-
Presence of adherent Escherichia coli strains in ileal mucosa of patients with Crohn's disease
-
Darfeuille-Michaud A, Neut C, Barnich N, et al. Presence of adherent Escherichia coli strains in ileal mucosa of patients with Crohn's disease. Gastroenterology 1998;115:1405-13.
-
(1998)
Gastroenterology
, vol.115
, pp. 1405-1413
-
-
Darfeuille-Michaud, A.1
Neut, C.2
Barnich, N.3
-
29
-
-
0034873344
-
Adherent invasive Escherichia coli strains from patients with Crohn's disease survive and replicate within macrophages without inducing host cell death
-
Glasser AL, Boudeau J, Barnich N, et al. Adherent invasive Escherichia coli strains from patients with Crohn's disease survive and replicate within macrophages without inducing host cell death. Infect Immun 2001;69:5529-37.
-
(2001)
Infect Immun
, vol.69
, pp. 5529-5537
-
-
Glasser, A.L.1
Boudeau, J.2
Barnich, N.3
-
30
-
-
0036741464
-
Mucosal and invading bacteria in patients with inflammatory bowel disease compared with controls
-
Kleessen B, Kroesen AJ, Buhr HJ, et al. Mucosal and invading bacteria in patients with inflammatory bowel disease compared with controls. Scand J Gastroenterol 2002;37:1034-41.
-
(2002)
Scand J Gastroenterol
, vol.37
, pp. 1034-1041
-
-
Kleessen, B.1
Kroesen, A.J.2
Buhr, H.J.3
-
31
-
-
84873019302
-
Duodenal infusion of donor feces for recurrent Clostridium difficile
-
van Nood E, Vrieze A, Nieuwdorp M, et al. Duodenal infusion of donor feces for recurrent Clostridium difficile. N Engl J Med 2013;368:407-15.
-
(2013)
N Engl J Med
, vol.368
, pp. 407-415
-
-
van Nood, E.1
Vrieze, A.2
Nieuwdorp, M.3
-
32
-
-
84865494677
-
Systematic review: faecal microbiota transplantation in the management of inflammatory bowel disease
-
Anderson JL, Edney RJ, Whelan K. Systematic review: faecal microbiota transplantation in the management of inflammatory bowel disease. Aliment Pharmacol Ther 2012;36:503-16.
-
(2012)
Aliment Pharmacol Ther
, vol.36
, pp. 503-516
-
-
Anderson, J.L.1
Edney, R.J.2
Whelan, K.3
-
33
-
-
84885479748
-
Temporal bacterial community dynamics vary among ulcerative colitis patients after fecal microbiota transplantation
-
Angelberger S, Reinisch W, Makristathis A, et al. Temporal bacterial community dynamics vary among ulcerative colitis patients after fecal microbiota transplantation. Am J Gastroenterol 2013;108:1620-30.
-
(2013)
Am J Gastroenterol
, vol.108
, pp. 1620-1630
-
-
Angelberger, S.1
Reinisch, W.2
Makristathis, A.3
-
34
-
-
0038613653
-
Treatment of ulcerative colitis using fecal bacteriotherapy
-
Borody TJ, Warren EF, Leis S, et al. Treatment of ulcerative colitis using fecal bacteriotherapy. J Clin Gastroenterol 2003;37:42-47.
-
(2003)
J Clin Gastroenterol
, vol.37
, pp. 42-47
-
-
Borody, T.J.1
Warren, E.F.2
Leis, S.3
-
35
-
-
84856969539
-
Fecal microbiota transplantation and emerging applications
-
Borody TJ, Khoruts A. Fecal microbiota transplantation and emerging applications. Nat Rev Gastroenterol Hepatol 2012;9:88-96.
-
(2012)
Nat Rev Gastroenterol Hepatol
, vol.9
, pp. 88-96
-
-
Borody, T.J.1
Khoruts, A.2
-
36
-
-
84919624382
-
Fecal microbiota transplantation through mid-gut for refractory Crohn's disease: safety, feasibility and efficacy trial results
-
Cui B, Feng Q, Wang H, et al. Fecal microbiota transplantation through mid-gut for refractory Crohn's disease: safety, feasibility and efficacy trial results. J Gastroenterol Hepatol 2015;20:51-8.
-
(2015)
J Gastroenterol Hepatol
, vol.20
, pp. 51-58
-
-
Cui, B.1
Feng, Q.2
Wang, H.3
-
37
-
-
84884585915
-
Alteration of intestinal dysbiosis by fecal microbiota transplantation does not induce remission in patients with chronic active ulcerative colitis
-
Kump PK, Grochenig HP, Lackner S, et al. Alteration of intestinal dysbiosis by fecal microbiota transplantation does not induce remission in patients with chronic active ulcerative colitis. Inflamm Bowel Dis 2013;19:2155- 65.
-
(2013)
Inflamm Bowel Dis
, vol.19
, pp. 2155-2165
-
-
Kump, P.K.1
Grochenig, H.P.2
Lackner, S.3
-
38
-
-
84931469899
-
Fecal microbiota transplantation induces remission in patients with active ulcerative colitis in a randomized controlled trial
-
Moayyedi P, Surette MG, Kim PT, et al. Fecal microbiota transplantation induces remission in patients with active ulcerative colitis in a randomized controlled trial. Gastroenterology 2015;149:102-9.
-
(2015)
Gastroenterology
, vol.149
, pp. 102-109
-
-
Moayyedi, P.1
Surette, M.G.2
Kim, P.T.3
-
39
-
-
84931423571
-
Findings from a randomized controlled trial of fecal transplantation for patients with ulcerative colitis
-
Rossen NG, Fuentes S, van der Spek MJ, et al. Findings from a randomized controlled trial of fecal transplantation for patients with ulcerative colitis. Gastroenterology 2015;149:110-8.
-
(2015)
Gastroenterology
, vol.149
, pp. 110-118
-
-
Rossen, N.G.1
Fuentes, S.2
van der Spek, M.J.3
-
40
-
-
84923436937
-
Fecal microbial transplant effect on clinical outcomes and fecal microbiome in active Crohn's disease
-
Suskind DL, Brittnacher MJ, Wahbeh G, et al. Fecal microbial transplant effect on clinical outcomes and fecal microbiome in active Crohn's disease. Inflamm Bowel Dis 2015;21:556-63.
-
(2015)
Inflamm Bowel Dis
, vol.21
, pp. 556-563
-
-
Suskind, D.L.1
Brittnacher, M.J.2
Wahbeh, G.3
-
41
-
-
84927910670
-
Modulating the microbiota in inflammatory bowel diseases: prebiotics, probiotics or faecal transplantation?
-
Verbeke KA, Boesmans L, Boets E. Modulating the microbiota in inflammatory bowel diseases: prebiotics, probiotics or faecal transplantation? Proc Nutr Soc 2014;73:490-7.
-
(2014)
Proc Nutr Soc
, vol.73
, pp. 490-497
-
-
Verbeke, K.A.1
Boesmans, L.2
Boets, E.3
-
42
-
-
84887534716
-
Fecal microbiota transplantation for severe enterocolonic fistulizing Crohn's disease
-
Zhang FM, Wang HG, Wang M, et al. Fecal microbiota transplantation for severe enterocolonic fistulizing Crohn's disease. World J Gastroenterol 2013;19:7213-6.
-
(2013)
World J Gastroenterol
, vol.19
, pp. 7213-7216
-
-
Zhang, F.M.1
Wang, H.G.2
Wang, M.3
-
43
-
-
0030872620
-
Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
-
Godon JJ, Zumstein E, Dabert P, et al. Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl Environ Microbiol 1997;63:2802-13.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 2802-2813
-
-
Godon, J.J.1
Zumstein, E.2
Dabert, P.3
-
44
-
-
84862288051
-
Assessment of the microbiota in microdissected tissues of Crohn's disease patients
-
De Hertogh G, Lemmens B, Verhasselt P, et al. Assessment of the microbiota in microdissected tissues of Crohn's disease patients. Int J Inflam 2012;2012:505674.
-
(2012)
Int J Inflam
, vol.2012
, pp. 505674
-
-
De Hertogh, G.1
Lemmens, B.2
Verhasselt, P.3
-
45
-
-
70450247135
-
Fecal bacteriotherapy for recurrent Clostridium difficile infection
-
Bakken JS. Fecal bacteriotherapy for recurrent Clostridium difficile infection. Anaerobe 2009;15:285-9.
-
(2009)
Anaerobe
, vol.15
, pp. 285-289
-
-
Bakken, J.S.1
-
46
-
-
84900418033
-
Fecal microbiota transplant for relapsing Clostridium difficile infection using a frozen inoculum from unrelated donors: a randomized, open-label, controlled pilot study
-
Youngster I, Sauk J, Pindar C, et al. Fecal microbiota transplant for relapsing Clostridium difficile infection using a frozen inoculum from unrelated donors: a randomized, open-label, controlled pilot study. Clin Infect Dis 2014;58:1515-22.
-
(2014)
Clin Infect Dis
, vol.58
, pp. 1515-1522
-
-
Youngster, I.1
Sauk, J.2
Pindar, C.3
-
47
-
-
78650155416
-
Highlighting new phylogenetic specificities of Crohn's disease microbiota
-
Mondot S, Kang S, Furet JP, et al. Highlighting new phylogenetic specificities of Crohn's disease microbiota. Inflamm Bowel Dis 2011;17:185-92.
-
(2011)
Inflamm Bowel Dis
, vol.17
, pp. 185-192
-
-
Mondot, S.1
Kang, S.2
Furet, J.P.3
-
48
-
-
84863105536
-
Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease
-
Papa E, Docktor M, Smillie C, et al. Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease. PLoS One 2012;7:e39242.
-
(2012)
PLoS One
, vol.7
, pp. e39242
-
-
Papa, E.1
Docktor, M.2
Smillie, C.3
-
49
-
-
84879012628
-
Microbiota and healthy ageing: observational and nutritional intervention studies
-
Brussow H. Microbiota and healthy ageing: observational and nutritional intervention studies. Microb Biotechnol 2013;6:326-34.
-
(2013)
Microb Biotechnol
, vol.6
, pp. 326-334
-
-
Brussow, H.1
|