-
1
-
-
2542542256
-
Ultraconserved elements in the human genome
-
Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D. Ultraconserved elements in the human genome. Science. 2004; 304: 1321-1325.
-
(2004)
Science
, vol.304
, pp. 1321-1325
-
-
Bejerano, G.1
Pheasant, M.2
Makunin, I.3
Stephen, S.4
Kent, W.J.5
Mattick, J.S.6
Haussler, D.7
-
2
-
-
34548230885
-
Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas
-
Calin GA, Liu C, Ferracin M, Hyslop T, Spizzo R, Sevignani C, Fabbri M, Cimmino A, Lee EJ, Wojcik SE, Shimizu M, Tili E, Rossi S, et al. Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. Cancer Cell. 2007; 12: 215-229.
-
(2007)
Cancer Cell
, vol.12
, pp. 215-229
-
-
Calin, G.A.1
Liu, C.2
Ferracin, M.3
Hyslop, T.4
Spizzo, R.5
Sevignani, C.6
Fabbri, M.7
Cimmino, A.8
Lee, E.J.9
Wojcik, S.E.10
Shimizu, M.11
Tili, E.12
Rossi, S.13
-
3
-
-
84873605164
-
Transcription signatures encoded by ultraconserved genomic regions in human prostate cancer
-
Hudson RS, Yi M, Volfovsky N, Prueitt RL, Esposito D, Volinia S, Liu CG, Schetter AJ, Van Roosbroeck K, Stephens RM, Calin GA, Croce CM, Ambs S. Transcription signatures encoded by ultraconserved genomic regions in human prostate cancer. Mol Cancer. 2013; 12: 13.
-
(2013)
Mol Cancer
, vol.12
, pp. 13
-
-
Hudson, R.S.1
Yi, M.2
Volfovsky, N.3
Prueitt, R.L.4
Esposito, D.5
Volinia, S.6
Liu, C.G.7
Schetter, A.J.8
Van Roosbroeck, K.9
Stephens, R.M.10
Calin, G.A.11
Croce, C.M.12
Ambs, S.13
-
4
-
-
84856805631
-
Expression levels of transcribed ultraconserved regions uc.73 and uc.388 are altered in colorectal cancer
-
Sana J, Hankeova S, Svoboda M, Kiss I, Vyzula R, Slaby O. Expression levels of transcribed ultraconserved regions uc.73 and uc.388 are altered in colorectal cancer. Oncology. 2012; 82: 114-118.
-
(2012)
Oncology
, vol.82
, pp. 114-118
-
-
Sana, J.1
Hankeova, S.2
Svoboda, M.3
Kiss, I.4
Vyzula, R.5
Slaby, O.6
-
5
-
-
79551674253
-
Expression and functional role of a transcribed noncoding RNA with an ultraconserved element in hepatocellular carcinoma
-
Braconi C, Valeri N, Kogure T, Gasparini P, Huang N, Nuovo GJ, Terracciano L, Croce CM, Patel T. Expression and functional role of a transcribed noncoding RNA with an ultraconserved element in hepatocellular carcinoma. Proc Natl Acad Sci USA. 2011; 108: 786-791.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 786-791
-
-
Braconi, C.1
Valeri, N.2
Kogure, T.3
Gasparini, P.4
Huang, N.5
Nuovo, G.J.6
Terracciano, L.7
Croce, C.M.8
Patel, T.9
-
6
-
-
84927950549
-
A large-scale expression study associates uc.283-plus lncRNA with pluripotent stem cells and human glioma
-
Galasso M, Dama P, Previati M, Sandhu S, Palatini J, Coppola V, Warner S, Sana ME, Zanella R, Abujarour R, Desponts C, Teitell MA. A large-scale expression study associates uc.283-plus lncRNA with pluripotent stem cells and human glioma. Genome Med. 2014; 6: 76.
-
(2014)
Genome Med
, vol.6
, pp. 76
-
-
Galasso, M.1
Dama, P.2
Previati, M.3
Sandhu, S.4
Palatini, J.5
Coppola, V.6
Warner, S.7
Sana, M.E.8
Zanella, R.9
Abujarour, R.10
Desponts, C.11
Teitell, M.A.12
-
7
-
-
78649881517
-
CpG island hypermethylation-associated silencing of non-coding RNAs transcribed from ultraconserved regions in human cancer
-
Lujambio A, Portela A, Liz J, Melo SA, Rossi S, Spizzo R, Croce CM, Calin GA, Esteller M. CpG island hypermethylation-associated silencing of non-coding RNAs transcribed from ultraconserved regions in human cancer. Oncogene. 2010; 29: 6390-6401.
-
(2010)
Oncogene
, vol.29
, pp. 6390-6401
-
-
Lujambio, A.1
Portela, A.2
Liz, J.3
Melo, S.A.4
Rossi, S.5
Spizzo, R.6
Croce, C.M.7
Calin, G.A.8
Esteller, M.9
-
8
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA. 2001; 98: 5116-5121.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
9
-
-
0037446974
-
A genetic explanation of Slaughter's concept of field cancerization: evidence and clinical implications
-
Braakhuis BJM, Tabor MP, Kummer JA, Leemans CR, Brakenhoff RH. A genetic explanation of Slaughter's concept of field cancerization: evidence and clinical implications. Cancer Res. 2003; 63: 1727-1730.
-
(2003)
Cancer Res
, vol.63
, pp. 1727-1730
-
-
Braakhuis, B.J.M.1
Tabor, M.P.2
Kummer, J.A.3
Leemans, C.R.4
Brakenhoff, R.H.5
-
10
-
-
79958804414
-
CASZ1, a candidate tumorsuppressor gene, suppresses neuroblastoma tumor growth through reprogramming gene expression
-
Liu Z, Yang X, Li Z, McMahon C, Sizer C, Barenboim-Stapleton L, Bliskovsky V, Mock B, Ried T, London WB, Maris J, Khan J, Thiele CJ. CASZ1, a candidate tumorsuppressor gene, suppresses neuroblastoma tumor growth through reprogramming gene expression. Cell Death Differ. 2011; 18: 1174-1183.
-
(2011)
Cell Death Differ
, vol.18
, pp. 1174-1183
-
-
Liu, Z.1
Yang, X.2
Li, Z.3
McMahon, C.4
Sizer, C.5
Barenboim-Stapleton, L.6
Bliskovsky, V.7
Mock, B.8
Ried, T.9
London, W.B.10
Maris, J.11
Khan, J.12
Thiele, C.J.13
-
11
-
-
0037045398
-
ORFFINDER: a vector for high-throughput gene identification
-
Rombel IT, Sykes KF, Rayner S, Johnston SA. ORFFINDER: a vector for high-throughput gene identification. Gene. 2002; 282: 33-41.
-
(2002)
Gene
, vol.282
, pp. 33-41
-
-
Rombel, I.T.1
Sykes, K.F.2
Rayner, S.3
Johnston, S.A.4
-
12
-
-
0001290045
-
PROSITE: a documented database using patterns and profiles as motif descriptors
-
Sigrist CJA, Cerutti L, Hulo N, Gattiker A, Falquet L, Pagni M, Bairoch A, Bucher P. PROSITE: a documented database using patterns and profiles as motif descriptors. Brief Bioinformatics. 2002; 3: 265-274.
-
(2002)
Brief Bioinformatics
, vol.3
, pp. 265-274
-
-
Sigrist, C.J.A.1
Cerutti, L.2
Hulo, N.3
Gattiker, A.4
Falquet, L.5
Pagni, M.6
Bairoch, A.7
Bucher, P.8
-
13
-
-
4644237189
-
Fast and effective prediction of microRNA/target duplexes
-
Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R. Fast and effective prediction of microRNA/target duplexes. RNA. 2004; 10: 1507-1517.
-
(2004)
RNA
, vol.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hochsmann, M.3
Giegerich, R.4
-
14
-
-
0027485066
-
Single base pair mutation analysis by PNA directed PCR clamping
-
Orum H, Nielsen PE, Egholm M, Berg RH, Buchardt O, Stanley C. Single base pair mutation analysis by PNA directed PCR clamping. Nucleic Acids Res. 1993; 21: 5333-5336.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 5333-5336
-
-
Orum, H.1
Nielsen, P.E.2
Egholm, M.3
Berg, R.H.4
Buchardt, O.5
Stanley, C.6
-
15
-
-
79953779999
-
Peptides from Royal Jelly: studies on the antimicrobial activity of jelleins, jelleins analogs and synergy with temporins
-
Romanelli A, Moggio L, Montella RC, Campiglia P, Iannaccone M, Capuano F, Pedone C, Capparelli R. Peptides from Royal Jelly: studies on the antimicrobial activity of jelleins, jelleins analogs and synergy with temporins. J Pept Sci. 2011; 17: 348-352.
-
(2011)
J Pept Sci
, vol.17
, pp. 348-352
-
-
Romanelli, A.1
Moggio, L.2
Montella, R.C.3
Campiglia, P.4
Iannaccone, M.5
Capuano, F.6
Pedone, C.7
Capparelli, R.8
-
16
-
-
84874766051
-
Potential of tumor-suppressive miR-596 targeting LGALS3BP as a therapeutic agent in oral cancer
-
Endo H, Muramatsu T, Furuta M, Uzawa N, Pimkhaokham A, Amagasa T, Inazawa J, Kozaki KI. Potential of tumor-suppressive miR-596 targeting LGALS3BP as a therapeutic agent in oral cancer. Carcinogenesis. 2013; 34: 560-569.
-
(2013)
Carcinogenesis
, vol.34
, pp. 560-569
-
-
Endo, H.1
Muramatsu, T.2
Furuta, M.3
Uzawa, N.4
Pimkhaokham, A.5
Amagasa, T.6
Inazawa, J.7
Kozaki, K.I.8
-
17
-
-
84903736048
-
Regulation of pri-miRNA processing by a long noncoding RNA transcribed from an ultraconserved region
-
Liz J, Portela A, Soler M, Gómez A, Ling H, Michlewski G, Calin GA, Guil S, Esteller M. Regulation of pri-miRNA processing by a long noncoding RNA transcribed from an ultraconserved region. Mol Cell. 2014; 55: 138-147.
-
(2014)
Mol Cell
, vol.55
, pp. 138-147
-
-
Liz, J.1
Portela, A.2
Soler, M.3
Gómez, A.4
Ling, H.5
Michlewski, G.6
Calin, G.A.7
Guil, S.8
Esteller, M.9
-
18
-
-
80051989609
-
Understanding the transcriptome through RNA structure
-
Wan Y, Kertesz M, Spitale RC, Segal E, Chang HY. Understanding the transcriptome through RNA structure. Nat Rev Genet. 2011; 12: 641-655.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 641-655
-
-
Wan, Y.1
Kertesz, M.2
Spitale, R.C.3
Segal, E.4
Chang, H.Y.5
-
19
-
-
84907536806
-
RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites
-
Engreitz JM, Sirokman K, McDonel P, Shishkin AA, Surka C, Russell P, Grossman SR, Chow AY, Guttman M, Lander ES. RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites. Cell. 2014; 159: 188-199.
-
(2014)
Cell
, vol.159
, pp. 188-199
-
-
Engreitz, J.M.1
Sirokman, K.2
McDonel, P.3
Shishkin, A.A.4
Surka, C.5
Russell, P.6
Grossman, S.R.7
Chow, A.Y.8
Guttman, M.9
Lander, E.S.10
-
20
-
-
84875098242
-
Isolation and identification of cell-specific microRNAs targeting a messenger RNA using a biotinylated anti-sense oligonucleotide capture affinity technique
-
Hassan T, Smith SGJ, Gaughan K, Oglesby IK, O'Neill S, McElvaney NG, Greene CM. Isolation and identification of cell-specific microRNAs targeting a messenger RNA using a biotinylated anti-sense oligonucleotide capture affinity technique. Nucleic Acids Res. 2013; 41: e71.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Hassan, T.1
Smith, S.G.J.2
Gaughan, K.3
Oglesby, I.K.4
O'Neill, S.5
McElvaney, N.G.6
Greene, C.M.7
-
21
-
-
77956542998
-
CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer
-
Wang J, Liu X, Wu H, Ni P, Gu Z, Qiao Y, Chen N, Sun F, Fan Q. CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer. Nucleic Acids Res. 2010; 38:5366-5383.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5366-5383
-
-
Wang, J.1
Liu, X.2
Wu, H.3
Ni, P.4
Gu, Z.5
Qiao, Y.6
Chen, N.7
Sun, F.8
Fan, Q.9
-
22
-
-
33751316959
-
In vivo enhancer analysis of human conserved non-coding sequences
-
Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M, Minovitsky S, Dubchak I, Holt A, Lewis KD, Plajzer-Frick I, Akiyama J, De Val S, et al. In vivo enhancer analysis of human conserved non-coding sequences. Nature. 2006; 444: 499-502.
-
(2006)
Nature
, vol.444
, pp. 499-502
-
-
Pennacchio, L.A.1
Ahituv, N.2
Moses, A.M.3
Prabhakar, S.4
Nobrega, M.A.5
Shoukry, M.6
Minovitsky, S.7
Dubchak, I.8
Holt, A.9
Lewis, K.D.10
Plajzer-Frick, I.11
Akiyama, J.12
De Val, S.13
-
23
-
-
3042752769
-
An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues
-
Liu C-G, Calin GA, Meloon B, Gamliel N, Sevignani C, Ferracin M, Dan Dumitru C, Shimizu M, Zupo S, Dono M, Alder H, Bullrich F, Negrini M, et al. An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues. Proc Natl Acad Sci USA. 2004; 101:9740-4.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9740-9744
-
-
Liu, C.-G.1
Calin, G.A.2
Meloon, B.3
Gamliel, N.4
Sevignani, C.5
Ferracin, M.6
Dan Dumitru, C.7
Shimizu, M.8
Zupo, S.9
Dono, M.10
Alder, H.11
Bullrich, F.12
Negrini, M.13
-
24
-
-
34447560961
-
Analysis of gene expression data using BRB_Array Tools
-
Simon R, Lam A, Li MC, Ngan M, Menenzes S, Zhao Y. Analysis of gene expression data using BRB_Array Tools. Cancer Inform. 2007; 3:11-17.
-
(2007)
Cancer Inform
, vol.3
, pp. 11-17
-
-
Simon, R.1
Lam, A.2
Li, M.C.3
Ngan, M.4
Menenzes, S.5
Zhao, Y.6
-
25
-
-
72549097028
-
siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect
-
Naito Y, Yoshimura J, Morishita S, Ui-Tei K. siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect. BMC Bioinformatics. 2009; 10:392.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 392
-
-
Naito, Y.1
Yoshimura, J.2
Morishita, S.3
Ui-Tei, K.4
-
26
-
-
84891818318
-
miRBase: annotating high confidence microRNAs using deep sequencing data
-
Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 2014; 42: D68-D73.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D68-D73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
27
-
-
78651293534
-
miRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2011; 39: D152-D157.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D152-D157
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
29
-
-
33644750115
-
miRBase: microRNA sequences, targets and gene nomenclature
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006; 34: D140-D144.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D140-D144
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
30
-
-
0347755643
-
The microRNA Registry
-
Griffiths-Jones S. The microRNA Registry. Nucleic Acids Res. 2004; 32: D109-D111.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D109-D111
-
-
Griffiths-Jones, S.1
-
31
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell. 2005; 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
32
-
-
33747849920
-
RNAhybrid: microRNA target prediction easy, fast and flexible
-
Krüger J, Rehmsmeier M. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res. 2006; 34: W451-W454.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. W451-W454
-
-
Krüger, J.1
Rehmsmeier, M.2
-
33
-
-
82055164092
-
ViennaRNA Package 2.0
-
Lorenz R, Bernhart SH, Höner Zu Siederdissen C, Tafer H, Flamm C, Stadler PF, Hofacker. ViennaRNA Package 2.0. Algorithms. Mol Biol. 2011; 6: 26.
-
(2011)
Algorithms. Mol Biol
, vol.6
, pp. 26
-
-
Lorenz, R.1
Bernhart, S.H.2
Höner Zu Siederdissen, C.3
Tafer, H.4
Flamm, C.5
Stadler, P.F.6
Hofacker, I.L.7
-
35
-
-
77954309210
-
Development of an efficient and low-cost protocol for the manual PNA synthesis by Fmoc chemistry
-
Avitabile C, Moggio L, D'Andrea LD, Pedone C, Romanelli A. Development of an efficient and low-cost protocol for the manual PNA synthesis by Fmoc chemistry. Tetrahedron Letters. 2010; 51: 3716-3718.
-
(2010)
Tetrahedron Letters
, vol.51
, pp. 3716-3718
-
-
Avitabile, C.1
Moggio, L.2
D'Andrea, L.D.3
Pedone, C.4
Romanelli, A.5
-
36
-
-
84863800196
-
Targeting premiRNA by peptide nucleic acids: a new strategy to interfere in the miRNA maturation
-
Avitabile C, Saviano M, D'Andrea L, Bianchi N, Fabbri E, Brognara E, Gambari R, Romanelli A. Targeting premiRNA by peptide nucleic acids: a new strategy to interfere in the miRNA maturation. Artif DNA PNA XNA. 2012; 3: 88-96.
-
(2012)
Artif DNA PNA XNA
, vol.3
, pp. 88-96
-
-
Avitabile, C.1
Saviano, M.2
D'Andrea, L.3
Bianchi, N.4
Fabbri, E.5
Brognara, E.6
Gambari, R.7
Romanelli, A.8
-
37
-
-
84934441802
-
Inhibition of miRNA maturation by peptide nucleic acids
-
Avitabile C, Fabbri E, Bianchi N, Gambari R, Romanelli A. Inhibition of miRNA maturation by peptide nucleic acids. Methods Mol Biol. 2014; 1095: 157-164.
-
(2014)
Methods Mol Biol
, vol.1095
, pp. 157-164
-
-
Avitabile, C.1
Fabbri, E.2
Bianchi, N.3
Gambari, R.4
Romanelli, A.5
|