-
1
-
-
60349120914
-
Long non-coding RNAs: insights into functions
-
19188922
-
Mercer TR, Dinger ME, Mattick JS. Long non-coding RNAs: insights into functions. Nat Rev Genet 2009, 10:155-159. 10.1038/nrg2521, 19188922.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 155-159
-
-
Mercer, T.R.1
Dinger, M.E.2
Mattick, J.S.3
-
2
-
-
2542542256
-
Ultraconserved elements in the human genome
-
15131266
-
Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D. Ultraconserved elements in the human genome. Science 2004, 304:1321-1325. 10.1126/science.1098119, 15131266.
-
(2004)
Science
, vol.304
, pp. 1321-1325
-
-
Bejerano, G.1
Pheasant, M.2
Makunin, I.3
Stephen, S.4
Kent, W.J.5
Mattick, J.S.6
Haussler, D.7
-
3
-
-
33646928347
-
A distal enhancer and an ultraconserved exon are derived from a novel retroposon
-
16625209
-
Bejerano G, Lowe CB, Ahituv N, King B, Siepel A, Salama SR, Rubin EM, Kent WJ, Haussler D. A distal enhancer and an ultraconserved exon are derived from a novel retroposon. Nature 2006, 441:87-90. 10.1038/nature04696, 16625209.
-
(2006)
Nature
, vol.441
, pp. 87-90
-
-
Bejerano, G.1
Lowe, C.B.2
Ahituv, N.3
King, B.4
Siepel, A.5
Salama, S.R.6
Rubin, E.M.7
Kent, W.J.8
Haussler, D.9
-
4
-
-
18844376318
-
In vivo characterization of a vertebrate ultraconserved enhancer
-
15885503
-
Poulin F, Nobrega MA, Plajzer-Frick I, Holt A, Afzal V, Rubin EM, Pennacchio LA. In vivo characterization of a vertebrate ultraconserved enhancer. Genomics 2005, 85:774-781. 10.1016/j.ygeno.2005.03.003, 15885503.
-
(2005)
Genomics
, vol.85
, pp. 774-781
-
-
Poulin, F.1
Nobrega, M.A.2
Plajzer-Frick, I.3
Holt, A.4
Afzal, V.5
Rubin, E.M.6
Pennacchio, L.A.7
-
5
-
-
33751316959
-
In vivo enhancer analysis of human conserved non-coding sequences
-
17086198
-
Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M, Minovitsky S, Dubchak I, Holt A, Lewis KD, Plajzer-Frick I, Akiyama J, De Val S, Afzal V, Black BL, Couronne O, Eisen MB, Visel A, Rubin EM. In vivo enhancer analysis of human conserved non-coding sequences. Nature 2006, 444:499-502. 10.1038/nature05295, 17086198.
-
(2006)
Nature
, vol.444
, pp. 499-502
-
-
Pennacchio, L.A.1
Ahituv, N.2
Moses, A.M.3
Prabhakar, S.4
Nobrega, M.A.5
Shoukry, M.6
Minovitsky, S.7
Dubchak, I.8
Holt, A.9
Lewis, K.D.10
Plajzer-Frick, I.11
Akiyama, J.12
De Val, S.13
Afzal, V.14
Black, B.L.15
Couronne, O.16
Eisen, M.B.17
Visel, A.18
Rubin, E.M.19
-
6
-
-
85011939090
-
Ultraconserved elements: genomics, function and disease
-
18708752
-
Baira E, Greshock J, Coukos G, Zhang L. Ultraconserved elements: genomics, function and disease. RNA Biol 2008, 5:132-134. 10.4161/rna.5.3.6673, 18708752.
-
(2008)
RNA Biol
, vol.5
, pp. 132-134
-
-
Baira, E.1
Greshock, J.2
Coukos, G.3
Zhang, L.4
-
7
-
-
34548131708
-
Human genome ultraconserved elements are ultraselected
-
17702936
-
Katzman S, Kern AD, Bejerano G, Fewell G, Fulton L, Wilson RK, Salama SR, Haussler D. Human genome ultraconserved elements are ultraselected. Science 2007, 317:915. 10.1126/science.1142430, 17702936.
-
(2007)
Science
, vol.317
, pp. 915
-
-
Katzman, S.1
Kern, A.D.2
Bejerano, G.3
Fewell, G.4
Fulton, L.5
Wilson, R.K.6
Salama, S.R.7
Haussler, D.8
-
8
-
-
77951891107
-
Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved elements
-
20202189
-
Licastro D, Gennarino VA, Petrera F, Sanges R, Banfi S, Stupka E. Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved elements. BMC Genomics 2010, 11:151. 10.1186/1471-2164-11-151, 20202189.
-
(2010)
BMC Genomics
, vol.11
, pp. 151
-
-
Licastro, D.1
Gennarino, V.A.2
Petrera, F.3
Sanges, R.4
Banfi, S.5
Stupka, E.6
-
9
-
-
84892747673
-
Identification of expressed and conserved human noncoding RNAs
-
24344320
-
Nielsen MM, Tehler D, Vang S, Sudzina F, Hedegaard J, Nordentoft I, Orntoft TF, Lund AH, Pedersen JS. Identification of expressed and conserved human noncoding RNAs. RNA 2014, 20:236-251. 10.1261/rna.038927.113, 24344320.
-
(2014)
RNA
, vol.20
, pp. 236-251
-
-
Nielsen, M.M.1
Tehler, D.2
Vang, S.3
Sudzina, F.4
Hedegaard, J.5
Nordentoft, I.6
Orntoft, T.F.7
Lund, A.H.8
Pedersen, J.S.9
-
10
-
-
84903736048
-
Regulation of pri-miRNA processing by a long noncoding RNA transcribed from an ultraconserved region
-
Liz J, Portela A, Soler M, Gomez A, Ling H, Michlewski G, Calin GA, Guil S, Esteller M. Regulation of pri-miRNA processing by a long noncoding RNA transcribed from an ultraconserved region. Mol Cell 2014, 55:3-4. 10.1016/j.molcel.2014.05.005.
-
(2014)
Mol Cell
, vol.55
, pp. 3-4
-
-
Liz, J.1
Portela, A.2
Soler, M.3
Gomez, A.4
Ling, H.5
Michlewski, G.6
Calin, G.A.7
Guil, S.8
Esteller, M.9
-
11
-
-
44649155415
-
MicroRNAs and noncoding RNAs in hematological malignancies: molecular, clinical and therapeutic implications
-
18323801
-
Fabbri M, Garzon R, Andreeff M, Kantarjian HM, Garcia-Manero G, Calin GA. MicroRNAs and noncoding RNAs in hematological malignancies: molecular, clinical and therapeutic implications. Leukemia 2008, 22:1095-1105. 10.1038/leu.2008.30, 18323801.
-
(2008)
Leukemia
, vol.22
, pp. 1095-1105
-
-
Fabbri, M.1
Garzon, R.2
Andreeff, M.3
Kantarjian, H.M.4
Garcia-Manero, G.5
Calin, G.A.6
-
12
-
-
77955013582
-
Non-coding RNAs: a key to future personalized molecular therapy?
-
20236487
-
Galasso M, Elena Sana M, Volinia S. Non-coding RNAs: a key to future personalized molecular therapy?. Genome Med 2010, 2:12. 10.1186/gm133, 20236487.
-
(2010)
Genome Med
, vol.2
, pp. 12
-
-
Galasso, M.1
Elena Sana, M.2
Volinia, S.3
-
13
-
-
34548230885
-
Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas
-
17785203
-
Calin GA, Liu CG, Ferracin M, Hyslop T, Spizzo R, Sevignani C, Fabbri M, Cimmino A, Lee EJ, Wojcik SE, Shimizu M, Tili E, Rossi S, Taccioli C, Pichiorri F, Liu X, Zupo S, Herlea V, Gramantieri L, Lanza G, Alder H, Rassenti L, Volinia S, Schmittgen TD, Kipps TJ, Negrini M, Croce CM. Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. Cancer Cell 2007, 12:215-229. 10.1016/j.ccr.2007.07.027, 17785203.
-
(2007)
Cancer Cell
, vol.12
, pp. 215-229
-
-
Calin, G.A.1
Liu, C.G.2
Ferracin, M.3
Hyslop, T.4
Spizzo, R.5
Sevignani, C.6
Fabbri, M.7
Cimmino, A.8
Lee, E.J.9
Wojcik, S.E.10
Shimizu, M.11
Tili, E.12
Rossi, S.13
Taccioli, C.14
Pichiorri, F.15
Liu, X.16
Zupo, S.17
Herlea, V.18
Gramantieri, L.19
Lanza, G.20
Alder, H.21
Rassenti, L.22
Volinia, S.23
Schmittgen, T.D.24
Kipps, T.J.25
Negrini, M.26
Croce, C.M.27
more..
-
14
-
-
56949096813
-
Cancer-associated genomic regions (CAGRs) and noncoding RNAs: bioinformatics and therapeutic implications
-
18636290
-
Rossi S, Sevignani C, Nnadi SC, Siracusa LD, Calin GA. Cancer-associated genomic regions (CAGRs) and noncoding RNAs: bioinformatics and therapeutic implications. Mamm Genome 2008, 19:526-540. 10.1007/s00335-008-9119-8, 18636290.
-
(2008)
Mamm Genome
, vol.19
, pp. 526-540
-
-
Rossi, S.1
Sevignani, C.2
Nnadi, S.C.3
Siracusa, L.D.4
Calin, G.A.5
-
15
-
-
74249097855
-
Transcribed-ultra conserved region expression is associated with outcome in high-risk neuroblastoma
-
20003513
-
Scaruffi P, Stigliani S, Moretti S, Coco S, De Vecchi C, Valdora F, Garaventa A, Bonassi S, Tonini GP. Transcribed-ultra conserved region expression is associated with outcome in high-risk neuroblastoma. BMC Cancer 2009, 9:441. 10.1186/1471-2407-9-441, 20003513.
-
(2009)
BMC Cancer
, vol.9
, pp. 441
-
-
Scaruffi, P.1
Stigliani, S.2
Moretti, S.3
Coco, S.4
De Vecchi, C.5
Valdora, F.6
Garaventa, A.7
Bonassi, S.8
Tonini, G.P.9
-
16
-
-
77953808788
-
An integrative genomics screen uncovers ncRNA T-UCR functions in neuroblastoma tumours
-
20383195
-
Mestdagh P, Fredlund E, Pattyn F, Rihani A, Van Maerken T, Vermeulen J, Kumps C, Menten B, De Preter K, Schramm A, Schulte J, Noguera R, Schleiermacher G, Janoueix-Lerosey I, Laureys G, Powel R, Nittner D, Marine JC, Ringnér M, Speleman F, Vandesompele J. An integrative genomics screen uncovers ncRNA T-UCR functions in neuroblastoma tumours. Oncogene 2010, 29:3583-3592. 10.1038/onc.2010.106, 20383195.
-
(2010)
Oncogene
, vol.29
, pp. 3583-3592
-
-
Mestdagh, P.1
Fredlund, E.2
Pattyn, F.3
Rihani, A.4
Van Maerken, T.5
Vermeulen, J.6
Kumps, C.7
Menten, B.8
De Preter, K.9
Schramm, A.10
Schulte, J.11
Noguera, R.12
Schleiermacher, G.13
Janoueix-Lerosey, I.14
Laureys, G.15
Powel, R.16
Nittner, D.17
Marine, J.C.18
Ringnér, M.19
Speleman, F.20
Vandesompele, J.21
more..
-
17
-
-
40549096716
-
SNPs in ultraconserved elements and familial breast cancer risk
-
18174240
-
Yang R, Frank B, Hemminki K, Bartram CR, Wappenschmidt B, Sutter C, Kiechle M, Bugert P, Schmutzler RK, Arnold N, Weber BH, Niederacher D, Meindl A, Burwinkel B. SNPs in ultraconserved elements and familial breast cancer risk. Carcinogenesis 2008, 29:351-355. 10.1093/carcin/bgm290, 18174240.
-
(2008)
Carcinogenesis
, vol.29
, pp. 351-355
-
-
Yang, R.1
Frank, B.2
Hemminki, K.3
Bartram, C.R.4
Wappenschmidt, B.5
Sutter, C.6
Kiechle, M.7
Bugert, P.8
Schmutzler, R.K.9
Arnold, N.10
Weber, B.H.11
Niederacher, D.12
Meindl, A.13
Burwinkel, B.14
-
18
-
-
33144490646
-
A microRNA expression signature of human solid tumors defines cancer gene targets
-
16461460
-
Volinia S, Calin GA, Liu CG, Ambs S, Cimmino A, Petrocca F, Visone R, Iorio M, Roldo C, Ferracin M, Prueitt RL, Yanaihara N, Lanza G, Scarpa A, Vecchione A, Negrini M, Harris CC, Croce CM. A microRNA expression signature of human solid tumors defines cancer gene targets. Proc Natl Acad Sci U S A 2006, 103:2257-2261. 10.1073/pnas.0510565103, 16461460.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 2257-2261
-
-
Volinia, S.1
Calin, G.A.2
Liu, C.G.3
Ambs, S.4
Cimmino, A.5
Petrocca, F.6
Visone, R.7
Iorio, M.8
Roldo, C.9
Ferracin, M.10
Prueitt, R.L.11
Yanaihara, N.12
Lanza, G.13
Scarpa, A.14
Vecchione, A.15
Negrini, M.16
Harris, C.C.17
Croce, C.M.18
-
19
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
12538238
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19:185-193. 10.1093/bioinformatics/19.2.185, 12538238.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
20
-
-
34250877841
-
A mammalian microRNA expression atlas based on small RNA library sequencing
-
17604727
-
Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foà R, Schliwka J, Fuchs U, Novosel A, Müller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G, Frezzetti D, Trompeter HI, et al. A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 2007, 129:1401-1414. 10.1016/j.cell.2007.04.040, 17604727.
-
(2007)
Cell
, vol.129
, pp. 1401-1414
-
-
Landgraf, P.1
Rusu, M.2
Sheridan, R.3
Sewer, A.4
Iovino, N.5
Aravin, A.6
Pfeffer, S.7
Rice, A.8
Kamphorst, A.O.9
Landthaler, M.10
Lin, C.11
Socci, N.D.12
Hermida, L.13
Fulci, V.14
Chiaretti, S.15
Fò, R.16
Schliwka, J.17
Fuchs, U.18
Novosel, A.19
Müller, R.U.20
Schermer, B.21
Bissels, U.22
Inman, J.23
Phan, Q.24
Chien, M.25
Weir, D.B.26
Choksi, R.27
De Vita, G.28
Frezzetti, D.29
Trompeter, H.I.30
more..
-
21
-
-
34447560961
-
Analysis of gene expression data using BRB-ArrayTools
-
19455231
-
Simon R, Lam A, Li MC, Ngan M, Menenzes S, Zhao Y. Analysis of gene expression data using BRB-ArrayTools. Cancer Inform 2007, 3:11-17. [http://linus.nci.nih.gov/BRB-ArrayTools.html], 19455231.
-
(2007)
Cancer Inform
, vol.3
, pp. 11-17
-
-
Simon, R.1
Lam, A.2
Li, M.C.3
Ngan, M.4
Menenzes, S.5
Zhao, Y.6
-
22
-
-
57249083988
-
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
-
18940824
-
Busch A, Richter AS, Backofen R. IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions. Bioinformatics 2008, 24:2849-2856. 10.1093/bioinformatics/btn544, 18940824.
-
(2008)
Bioinformatics
, vol.24
, pp. 2849-2856
-
-
Busch, A.1
Richter, A.S.2
Backofen, R.3
-
23
-
-
75249107453
-
Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1
-
19850757
-
Richter AS, Schleberger C, Backofen R, Steglich C. Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1. Bioinformatics 2010, 26:1-5. 10.1093/bioinformatics/btp609, 19850757.
-
(2010)
Bioinformatics
, vol.26
, pp. 1-5
-
-
Richter, A.S.1
Schleberger, C.2
Backofen, R.3
Steglich, C.4
-
24
-
-
48449095385
-
The Vienna RNA websuite
-
18424795
-
Gruber AR, Lorenz R, Bernhart SH, Neubock R, Hofacker IL. The Vienna RNA websuite. Nucleic Acids Res 2008, 36:W70-W74. 10.1093/nar/gkn188, 18424795.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. W70-W74
-
-
Gruber, A.R.1
Lorenz, R.2
Bernhart, S.H.3
Neubock, R.4
Hofacker, I.L.5
-
25
-
-
77951841445
-
Reprogramming of miRNA networks in cancer and leukemia
-
20439436
-
Volinia S, Galasso M, Costinean S, Tagliavini L, Gamberoni G, Drusco A, Marchesini J, Mascellani N, Sana ME, Abu Jarour R, Desponts C, Teitell M, Baffa R, Aqeilan R, Iorio MV, Taccioli C, Garzon R, Di Leva G, Fabbri M, Catozzi M, Previati M, Ambs S, Palumbo T, Garofalo M, Veronese A, Bottoni A, Gasparini P, Harris CC, Visone R, Pekarsky Y, et al. Reprogramming of miRNA networks in cancer and leukemia. Genome Res 2010, 20:589-599. 10.1101/gr.098046.109, 20439436.
-
(2010)
Genome Res
, vol.20
, pp. 589-599
-
-
Volinia, S.1
Galasso, M.2
Costinean, S.3
Tagliavini, L.4
Gamberoni, G.5
Drusco, A.6
Marchesini, J.7
Mascellani, N.8
Sana, M.E.9
Abu Jarour, R.10
Desponts, C.11
Teitell, M.12
Baffa, R.13
Aqeilan, R.14
Iorio, M.V.15
Taccioli, C.16
Garzon, R.17
Di Leva, G.18
Fabbri, M.19
Catozzi, M.20
Previati, M.21
Ambs, S.22
Palumbo, T.23
Garofalo, M.24
Veronese, A.25
Bottoni, A.26
Gasparini, P.27
Harris, C.C.28
Visone, R.29
Pekarsky, Y.30
more..
-
26
-
-
27244434788
-
A MicroRNA signature associated with prognosis and progression in chronic lymphocytic leukemia
-
16251535
-
Calin GA, Ferracin M, Cimmino A, Di Leva G, Shimizu M, Wojcik SE, Iorio MV, Visone R, Sever NI, Fabbri M, Iuliano R, Palumbo T, Pichiorri F, Roldo C, Garzon R, Sevignani C, Rassenti L, Alder H, Volinia S, Liu CG, Kipps TJ, Negrini M, Croce CM. A MicroRNA signature associated with prognosis and progression in chronic lymphocytic leukemia. N Engl J Med 2005, 353:1793-1801. 10.1056/NEJMoa050995, 16251535.
-
(2005)
N Engl J Med
, vol.353
, pp. 1793-1801
-
-
Calin, G.A.1
Ferracin, M.2
Cimmino, A.3
Di Leva, G.4
Shimizu, M.5
Wojcik, S.E.6
Iorio, M.V.7
Visone, R.8
Sever, N.I.9
Fabbri, M.10
Iuliano, R.11
Palumbo, T.12
Pichiorri, F.13
Roldo, C.14
Garzon, R.15
Sevignani, C.16
Rassenti, L.17
Alder, H.18
Volinia, S.19
Liu, C.G.20
Kipps, T.J.21
Negrini, M.22
Croce, C.M.23
more..
-
27
-
-
33846112470
-
VISTA Enhancer Browser-a database of tissue-specific human enhancers
-
Visel A, Minovitsky S, Dubchak I, Pennacchio LA. VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Res 2007, 35:D88-D92. 10.1093/nar/gkl822, 17130149.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. D88-D92
-
-
Visel, A.1
Minovitsky, S.2
Dubchak, I.3
Pennacchio, L.A.4
-
28
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
21441907
-
Ernst J, Kheradpour P, Mikkelsen TS, Shoresh N, Ward LD, Epstein CB, Zhang X, Wang L, Issner R, Coyne M, Ku M, Durham T, Kellis M, Bernstein BE. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 2011, 473:43-49. 10.1038/nature09906, 21441907.
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
Kheradpour, P.2
Mikkelsen, T.S.3
Shoresh, N.4
Ward, L.D.5
Epstein, C.B.6
Zhang, X.7
Wang, L.8
Issner, R.9
Coyne, M.10
Ku, M.11
Durham, T.12
Kellis, M.13
Bernstein, B.E.14
-
29
-
-
84874248583
-
Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells
-
23382218
-
Sigova AA, Mullen AC, Molinie B, Gupta S, Orlando DA, Guenther MG, Almada AE, Lin C, Sharp PA, Giallourakis CC, Young RA. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. Proc Natl Acad Sci U S A 2013, 110:2876-2881. 10.1073/pnas.1221904110, 23382218.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 2876-2881
-
-
Sigova, A.A.1
Mullen, A.C.2
Molinie, B.3
Gupta, S.4
Orlando, D.A.5
Guenther, M.G.6
Almada, A.E.7
Lin, C.8
Sharp, P.A.9
Giallourakis, C.C.10
Young, R.A.11
-
30
-
-
84858608410
-
Cancer stem cells: impact, heterogeneity, and uncertainty
-
22439924
-
Magee JA, Piskounova E, Morrison SJ. Cancer stem cells: impact, heterogeneity, and uncertainty. Cancer Cell 2012, 21:283-296. 10.1016/j.ccr.2012.03.003, 22439924.
-
(2012)
Cancer Cell
, vol.21
, pp. 283-296
-
-
Magee, J.A.1
Piskounova, E.2
Morrison, S.J.3
-
31
-
-
84865546363
-
Unique biology of gliomas: challenges and opportunities
-
22683220
-
Watkins S, Sontheimer H. Unique biology of gliomas: challenges and opportunities. Trends Neurosci 2012, 35:546-556. 10.1016/j.tins.2012.05.001, 22683220.
-
(2012)
Trends Neurosci
, vol.35
, pp. 546-556
-
-
Watkins, S.1
Sontheimer, H.2
-
32
-
-
84863708888
-
Long non-coding RNA expression profiles predict clinical phenotypes in glioma
-
22709987
-
Zhang X, Sun S, Pu JK, Tsang AC, Lee D, Man VO, Lui WM, Wong ST, Leung GK. Long non-coding RNA expression profiles predict clinical phenotypes in glioma. Neurobiol Dis 2012, 48:1-8. 10.1016/j.nbd.2012.06.004, 22709987.
-
(2012)
Neurobiol Dis
, vol.48
, pp. 1-8
-
-
Zhang, X.1
Sun, S.2
Pu, J.K.3
Tsang, A.C.4
Lee, D.5
Man, V.O.6
Lui, W.M.7
Wong, S.T.8
Leung, G.K.9
-
33
-
-
84899508058
-
Connect four with glioblastoma stem cell factors
-
24766799
-
Gronych J, Pfister SM, Jones DT. Connect four with glioblastoma stem cell factors. Cell 2014, 157:525-527. 10.1016/j.cell.2014.04.001, 24766799.
-
(2014)
Cell
, vol.157
, pp. 525-527
-
-
Gronych, J.1
Pfister, S.M.2
Jones, D.T.3
-
34
-
-
78649881517
-
CpG island hypermethylation-associated silencing of non-coding RNAs transcribed from ultraconserved regions in human cancer
-
20802525
-
Lujambio A, Portela A, Liz J, Melo SA, Rossi S, Spizzo R, Croce CM, Calin GA, Esteller M. CpG island hypermethylation-associated silencing of non-coding RNAs transcribed from ultraconserved regions in human cancer. Oncogene 2010, 29:6390-6401. 10.1038/onc.2010.361, 20802525.
-
(2010)
Oncogene
, vol.29
, pp. 6390-6401
-
-
Lujambio, A.1
Portela, A.2
Liz, J.3
Melo, S.A.4
Rossi, S.5
Spizzo, R.6
Croce, C.M.7
Calin, G.A.8
Esteller, M.9
-
35
-
-
84873605164
-
Transcription signatures encoded by ultraconserved genomic regions in human prostate cancer
-
23409773
-
Hudson RS, Yi M, Volfovsky N, Prueitt RL, Esposito D, Volinia S, Liu CG, Schetter AJ, Van Roosbroeck K, Stephens RM, Calin GA, Croce CM, Ambs S. Transcription signatures encoded by ultraconserved genomic regions in human prostate cancer. Mol Cancer 2013, 12:13. 10.1186/1476-4598-12-13, 23409773.
-
(2013)
Mol Cancer
, vol.12
, pp. 13
-
-
Hudson, R.S.1
Yi, M.2
Volfovsky, N.3
Prueitt, R.L.4
Esposito, D.5
Volinia, S.6
Liu, C.G.7
Schetter, A.J.8
Van Roosbroeck, K.9
Stephens, R.M.10
Calin, G.A.11
Croce, C.M.12
Ambs, S.13
-
36
-
-
82055164092
-
ViennaRNA Package 2.0. Algorithms for molecular biology
-
22115189
-
Lorenz R, Bernhart SH, Honer Zu Siederdissen C, Tafer H, Flamm C, Stadler PF, Hofacker IL. ViennaRNA Package 2.0. Algorithms for molecular biology. AMB 2011, 6:26. 22115189.
-
(2011)
AMB
, vol.6
, pp. 26
-
-
Lorenz, R.1
Bernhart, S.H.2
Honer Zu Siederdissen, C.3
Tafer, H.4
Flamm, C.5
Stadler, P.F.6
Hofacker, I.L.7
-
37
-
-
33646877072
-
Thermodynamics of RNA-RNA binding
-
16446276
-
Muckstein U, Tafer H, Hackermuller J, Bernhart SH, Stadler PF, Hofacker IL. Thermodynamics of RNA-RNA binding. Bioinformatics 2006, 22:1177-1182. 10.1093/bioinformatics/btl024, 16446276.
-
(2006)
Bioinformatics
, vol.22
, pp. 1177-1182
-
-
Muckstein, U.1
Tafer, H.2
Hackermuller, J.3
Bernhart, S.H.4
Stadler, P.F.5
Hofacker, I.L.6
-
38
-
-
84884197513
-
An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs
-
Chang TH, Huang HY, Hsu JB, Weng SL, Horng JT, Huang HD. An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs. BMC Bioinformatics 2013, 14:S4.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. S4
-
-
Chang, T.H.1
Huang, H.Y.2
Hsu, J.B.3
Weng, S.L.4
Horng, J.T.5
Huang, H.D.6
-
39
-
-
55049135859
-
MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries
-
18583537
-
Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M. MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries. Stem Cells 2008, 26:2496-2505. 10.1634/stemcells.2008-0356, 18583537.
-
(2008)
Stem Cells
, vol.26
, pp. 2496-2505
-
-
Bar, M.1
Wyman, S.K.2
Fritz, B.R.3
Qi, J.4
Garg, K.S.5
Parkin, R.K.6
Kroh, E.M.7
Bendoraite, A.8
Mitchell, P.S.9
Nelson, A.M.10
Ruzzo, W.L.11
Ware, C.12
Radich, J.P.13
Gentleman, R.14
Ruohola-Baker, H.15
Tewari, M.16
-
40
-
-
78649402751
-
Short GC-rich RNA similar to miR 1909 and 1915 folds in silico with the 5?-UTR and ORF of Notch and responders: potential for the elimination of cancer stem cells
-
21042738
-
Li Y, Mine T, Ioannides CG. Short GC-rich RNA similar to miR 1909 and 1915 folds in silico with the 5?-UTR and ORF of Notch and responders: potential for the elimination of cancer stem cells. Oncol Rep 2010, 24:1443-1453. 21042738.
-
(2010)
Oncol Rep
, vol.24
, pp. 1443-1453
-
-
Li, Y.1
Mine, T.2
Ioannides, C.G.3
-
41
-
-
84881509492
-
MicroRNA-196a is a putative diagnostic biomarker and therapeutic target for laryngeal cancer
-
23967217
-
Saito K, Inagaki K, Kamimoto T, Ito Y, Sugita T, Nakajo S, Hirasawa A, Iwamaru A, Ishikura T, Hanaoka H, Okubo K, Onozaki T, Zama T. MicroRNA-196a is a putative diagnostic biomarker and therapeutic target for laryngeal cancer. PloS One 2013, 8:e71480. 10.1371/journal.pone.0071480, 23967217.
-
(2013)
PloS One
, vol.8
-
-
Saito, K.1
Inagaki, K.2
Kamimoto, T.3
Ito, Y.4
Sugita, T.5
Nakajo, S.6
Hirasawa, A.7
Iwamaru, A.8
Ishikura, T.9
Hanaoka, H.10
Okubo, K.11
Onozaki, T.12
Zama, T.13
-
42
-
-
84876806963
-
MicroRNA profile of paclitaxel-resistant serous ovarian carcinoma based on formalin-fixed paraffin-embedded samples
-
23627607
-
Li X, Lu Y, Chen Y, Lu W, Xie X. MicroRNA profile of paclitaxel-resistant serous ovarian carcinoma based on formalin-fixed paraffin-embedded samples. BMC Cancer 2013, 13:216. 10.1186/1471-2407-13-216, 23627607.
-
(2013)
BMC Cancer
, vol.13
, pp. 216
-
-
Li, X.1
Lu, Y.2
Chen, Y.3
Lu, W.4
Xie, X.5
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