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Volumn 7, Issue 7, 2015, Pages 2000-2009

Evolutionary Stasis in Cycad Plastomes and the First Case of Plastome GC-Biased Gene Conversion

Author keywords

biased mutation; cycad; GC biased gene conversion; gymnosperm; plastome

Indexed keywords

NUCLEOTIDE;

EID: 84964696333     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evv125     Document Type: Article
Times cited : (73)

References (63)
  • 2
    • 84890829647 scopus 로고    scopus 로고
    • The Amborella genome and the evolution of flowering plants
    • Amborella Genome Project. 2013. The Amborella genome and the evolution of flowering plants. Science 342:1241089.
    • (2013) Science , vol.342
    • Amborella Genome Project1
  • 3
    • 0025238551 scopus 로고
    • Evolutionary transfer of the chloroplast tufA gene to the nucleus
    • Baldauf SL, Palmer JD. 1990. Evolutionary transfer of the chloroplast tufA gene to the nucleus. Nature 344:262-265.
    • (1990) Nature , vol.344 , pp. 262-265
    • Baldauf, S.L.1    Palmer, J.D.2
  • 4
    • 0023359272 scopus 로고
    • Why do chloroplasts and mitochondria contain so many copies of their genome?
    • Bendich AJ. 1987. Why do chloroplasts and mitochondria contain so many copies of their genome? Bioessays 6:279-282
    • (1987) Bioessays , vol.6 , pp. 279-282
    • Bendich, A.J.1
  • 5
    • 0026582121 scopus 로고
    • Biased gene conversion, copy number, and apparent mutation rate differences within chloroplast and bacterial genomes
    • Birky CW Jr, Walsh JB. 1992. Biased gene conversion, copy number, and apparent mutation rate differences within chloroplast and bacterial genomes. Genetics 130:677-683.
    • (1992) Genetics , vol.130 , pp. 677-683
    • Birky, C.W.1    Walsh, J.B.2
  • 6
    • 0141726796 scopus 로고    scopus 로고
    • Cycads: Evolutionary innovations and the role of plant-derived neurotoxins
    • Brenner ED, Stevenson DW, Twigg RW. 2003. Cycads: evolutionary innovations and the role of plant-derived neurotoxins. Trends Plant Sci. 8:446-452.
    • (2003) Trends Plant Sci , vol.8 , pp. 446-452
    • Brenner, E.D.1    Stevenson, D.W.2    Twigg, R.W.3
  • 7
    • 65349104518 scopus 로고    scopus 로고
    • Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions
    • Cai Z, et al. 2008. Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions. J Mol Evol. 67:696-704.
    • (2008) J Mol Evol , vol.67 , pp. 696-704
    • Cai, Z.1
  • 8
    • 69149084832 scopus 로고    scopus 로고
    • A DNA barcode for land plants
    • CBOL Plant Working Group. 2009. A DNA barcode for land plants. Proc Natl Acad Sci U S A. 106:12794-12797.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 12794-12797
  • 9
    • 25144494505 scopus 로고    scopus 로고
    • A phylogeny of cycads (Cycadales) inferred from chloroplast matK gene, trnK intron, and nuclear rDNA ITS region
    • Chaw SM, Walters TW, Chang CC, Hu SH, Chen SH. 2005. A phylogeny of cycads (Cycadales) inferred from chloroplast matK gene, trnK intron, and nuclear rDNA ITS region. Mol Phylogenet Evol. 37:214-234.
    • (2005) Mol Phylogenet Evol , vol.37 , pp. 214-234
    • Chaw, S.M.1    Walters, T.W.2    Chang, C.C.3    Hu, S.H.4    Chen, S.H.5
  • 10
    • 11144236816 scopus 로고    scopus 로고
    • Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants
    • Cho Y, Mower JP, Qiu YL, Palmer JD. 2004. Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants. Proc Natl Acad Sci U S A. 101:17741-17746.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 17741-17746
    • Cho, Y.1    Mower, J.P.2    Qiu, Y.L.3    Palmer, J.D.4
  • 11
  • 12
    • 56549086194 scopus 로고    scopus 로고
    • Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants
    • Drouin G, Daoud H, Xia J. 2008. Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants. Mol Phylogenet Evol. 49:827-831.
    • (2008) Mol Phylogenet Evol , vol.49 , pp. 827-831
    • Drouin, G.1    Daoud, H.2    Xia, J.3
  • 13
    • 70350236484 scopus 로고    scopus 로고
    • Biased gene conversion and the evolution of mammalian genomic landscapes
    • Duret L, Galtier N. 2009. Biased gene conversion and the evolution of mammalian genomic landscapes. Annu Rev Genomics Hum Genet. 10:285-311.
    • (2009) Annu Rev Genomics Hum Genet , vol.10 , pp. 285-311
    • Duret, L.1    Galtier, N.2
  • 14
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 15
    • 0030888864 scopus 로고    scopus 로고
    • Correlated rates of synonymous site evolution across plant genomes
    • Eyre-Walker A, Gaut BS. 1997. Correlated rates of synonymous site evolution across plant genomes. Mol Biol Evol. 14:455-460.
    • (1997) Mol Biol Evol , vol.14 , pp. 455-460
    • Eyre-Walker, A.1    Gaut, B.S.2
  • 16
    • 0003437302 scopus 로고    scopus 로고
    • Distributed by the author. Seattle: Department of Genome Sciences, University of Washington
    • Felsenstein J. 2005. PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Seattle: Department of Genome Sciences, University of Washington.
    • (2005) PHYLIP (Phylogeny Inference Package) Version 3.6
    • Felsenstein, J.1
  • 17
    • 0035085035 scopus 로고    scopus 로고
    • Cytosine methylation of plastid genome in higher plants Fact or artefact?
    • Fojtová M, Kovarík A, Matyásek R. 2001. Cytosine methylation of plastid genome in higher plants Fact or artefact? Plant Sci. 160:585-593.
    • (2001) Plant Sci , vol.160 , pp. 585-593
    • Fojtová, M.1    Kovarík, A.2    Matyásek, R.3
  • 18
    • 0034766004 scopus 로고    scopus 로고
    • GC-content evolution in mammalian genomes: The biased gene conversion hypothesis
    • Galtier N, Piganeau G, Mouchiroud D, Duret L. 2001. GC-content evolution in mammalian genomes: the biased gene conversion hypothesis. Genetics 159:907-911.
    • (2001) Genetics , vol.159 , pp. 907-911
    • Galtier, N.1    Piganeau, G.2    Mouchiroud, D.3    Duret, L.4
  • 19
    • 84903440684 scopus 로고    scopus 로고
    • GC content evolution in coding regions of angiosperm genomes: A unifying hypothesis
    • Glémin S, Clément Y, David J, Ressayre A. 2014. GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis. Trends Genet. 30:263-270.
    • (2014) Trends Genet , vol.30 , pp. 263-270
    • Glémin, S.1    Clément, Y.2    David, J.3    Ressayre, A.4
  • 20
    • 84902963571 scopus 로고    scopus 로고
    • Predominant and substoichiometric isomers of the plastid genome coexist within Juniperus plants and have shifted multiple times during cupressophyte evolution
    • Guo W, et al. 2014. Predominant and substoichiometric isomers of the plastid genome coexist within Juniperus plants and have shifted multiple times during cupressophyte evolution. Genome Biol Evol. 6:580-590.
    • (2014) Genome Biol Evol , vol.6 , pp. 580-590
    • Guo, W.1
  • 21
    • 78049445172 scopus 로고    scopus 로고
    • Evidence that mutation is universally biased towards AT in bacteria
    • Hershberg R, Petrov DA. 2010. Evidence that mutation is universally biased towards AT in bacteria. PLoS Genet. 6:e1001115.
    • (2010) PLoS Genet , vol.6
    • Hershberg, R.1    Petrov, D.A.2
  • 22
    • 78049425463 scopus 로고    scopus 로고
    • Evidence of selection upon genomic GC-content in bacteria
    • Hildebrand F, Meyer A, Eyre-Walker A. 2010. Evidence of selection upon genomic GC-content in bacteria. PLoS Genet. 6:e1001107.
    • (2010) PLoS Genet , vol.6
    • Hildebrand, F.1    Meyer, A.2    Eyre-Walker, A.3
  • 23
    • 84927171936 scopus 로고    scopus 로고
    • Ancient nuclear plastid DNA in the yew family (taxaceae)
    • Hsu CY, Wu CS, Chaw SM. 2014. Ancient nuclear plastid DNA in the yew family (taxaceae). Genome Biol Evol. 6:2111-2121.
    • (2014) Genome Biol Evol , vol.6 , pp. 2111-2121
    • Hsu, C.Y.1    Wu, C.S.2    Chaw, S.M.3
  • 24
    • 33646835562 scopus 로고    scopus 로고
    • Elimination of deleterious mutations in plastid genomes by gene conversion
    • Khakhlova O, Bock R. 2006. Elimination of deleterious mutations in plastid genomes by gene conversion. Plant J. 46:85-94.
    • (2006) Plant J , vol.46 , pp. 85-94
    • Khakhlova, O.1    Bock, R.2
  • 25
    • 84922426330 scopus 로고    scopus 로고
    • Changes in DNA damage, molecular integrity, and copy number for plastid DNA and mitochondrial DNA during maize development
    • Kumar RA, Oldenburg DJ, Bendich AJ. 2014. Changes in DNA damage, molecular integrity, and copy number for plastid DNA and mitochondrial DNA during maize development. J Exp Bot. 65:6425-6439.
    • (2014) J Exp Bot , vol.65 , pp. 6425-6439
    • Kumar, R.A.1    Oldenburg, D.J.2    Bendich, A.J.3
  • 26
    • 19844377877 scopus 로고    scopus 로고
    • Compositional properties of green-plant plastid genomes
    • Kusumi J, Tachida H. 2005. Compositional properties of green-plant plastid genomes. J Mol Evol. 60:417-425.
    • (2005) J Mol Evol , vol.60 , pp. 417-425
    • Kusumi, J.1    Tachida, H.2
  • 27
    • 69949126557 scopus 로고    scopus 로고
    • PhyloBayes 3: A Bayesian software package for phylogenetic reconstruction and molecular dating
    • Lartillot N, Lepage T, Blanquart S. 2009. PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 25:2286-2288.
    • (2009) Bioinformatics , vol.25 , pp. 2286-2288
    • Lartillot, N.1    Lepage, T.2    Blanquart, S.3
  • 28
    • 84924417872 scopus 로고    scopus 로고
    • GC-Content evolution in bacterial genomes: The biased gene conversion hypothesis expands
    • Lassalle F, et al. 2015. GC-Content evolution in bacterial genomes: the biased gene conversion hypothesis expands. PLoS Genet. 11:e1004941.
    • (2015) PLoS Genet , vol.11
    • Lassalle, F.1
  • 29
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 30
    • 77958456904 scopus 로고    scopus 로고
    • Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies
    • Lin CP, Huang JP, Wu CS, Hsu CY, Chaw SM. 2010. Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies. Genome Biol Evol. 2:504-517.
    • (2010) Genome Biol Evol , vol.2 , pp. 504-517
    • Lin, C.P.1    Huang, J.P.2    Wu, C.S.3    Hsu, C.Y.4    Chaw, S.M.5
  • 31
    • 84907164588 scopus 로고    scopus 로고
    • Phylogeny and divergence times of gymnosperms inferred from single-copy nuclear genes
    • Lu Y, Ran JH, Guo DM, Yang ZY, Wang XQ. 2014. Phylogeny and divergence times of gymnosperms inferred from single-copy nuclear genes. PLoS One 9:e107679.
    • (2014) PLoS One , vol.9
    • Lu, Y.1    Ran, J.H.2    Guo, D.M.3    Yang, Z.Y.4    Wang, X.Q.5
  • 32
    • 0029160870 scopus 로고
    • Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing
    • Maier RM, Neckermann K, Igloi GL, Kössel H. 1995. Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. J Mol Biol. 251:614-628.
    • (1995) J Mol Biol , vol.251 , pp. 614-628
    • Maier, R.M.1    Neckermann, K.2    Igloi, G.L.3    Kössel, H.4
  • 33
    • 0038543069 scopus 로고    scopus 로고
    • Biased gene conversion: Implications for genome and sex evolution
    • Marais G. 2003. Biased gene conversion: implications for genome and sex evolution. Trends Genet. 19:330-338.
    • (2003) Trends Genet , vol.19 , pp. 330-338
    • Marais, G.1
  • 34
    • 77954693072 scopus 로고    scopus 로고
    • Recombination and the maintenance of plant organelle genome stability
    • Maréchal A, Brisson N. 2010. Recombination and the maintenance of plant organelle genome stability. New Phytol. 186:299-317.
    • (2010) New Phytol , vol.186 , pp. 299-317
    • Maréchal, A.1    Brisson, N.2
  • 35
    • 0027328291 scopus 로고
    • Chloroplast DNA codon use: Evidence for selection at the psb A locus based on tRNA availability
    • Morton BR. 1993. Chloroplast DNA codon use: evidence for selection at the psb A locus based on tRNA availability. J Mol Evol. 3:273-280.
    • (1993) J Mol Evol , vol.3 , pp. 273-280
    • Morton, B.R.1
  • 36
    • 0028865532 scopus 로고
    • Neighboring base composition and transversion/transition bias in a comparison of rice and maize chloroplast noncoding regions
    • Morton BR. 1995. Neighboring base composition and transversion/transition bias in a comparison of rice and maize chloroplast noncoding regions. Proc Natl Acad Sci U S A. 92:9717-9721.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 9717-9721
    • Morton, B.R.1
  • 37
    • 0031047088 scopus 로고    scopus 로고
    • The influence of neighboring base composition on substitutions in plant chloroplast coding sequences
    • Morton BR. 1997. The influence of neighboring base composition on substitutions in plant chloroplast coding sequences. Mol Biol Evol. 14:189-194.
    • (1997) Mol Biol Evol , vol.14 , pp. 189-194
    • Morton, B.R.1
  • 38
    • 34548568981 scopus 로고    scopus 로고
    • Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants
    • Mower JP, Touzet P, Gummow JS, Delph LF, Palmer JD. 2007. Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants. BMC Evol Biol. 7:135.
    • (2007) BMC Evol Biol , vol.7 , pp. 135
    • Mower, J.P.1    Touzet, P.2    Gummow, J.S.3    Delph, L.F.4    Palmer, J.D.5
  • 39
    • 50549201557 scopus 로고
    • The relation of recombination to mutational advance
    • Muller HJ. 1964. The relation of recombination to mutational advance. Mutat Res. 1:2-9.
    • (1964) Mutat Res , vol.1 , pp. 2-9
    • Muller, H.J.1
  • 40
    • 81055155907 scopus 로고    scopus 로고
    • Recent synchronous radiation of a living fossil
    • Nagalingum NS, et al. 2011. Recent synchronous radiation of a living fossil. Science 334:796-799.
    • (2011) Science , vol.334 , pp. 796-799
    • Nagalingum, N.S.1
  • 41
    • 79952369775 scopus 로고    scopus 로고
    • A character-based approach in the Mexican cycads supports diverse multigene combinations for DNA barcoding
    • Nicolalde-Morejón F, et al. 2011. A character-based approach in the Mexican cycads supports diverse multigene combinations for DNA barcoding. Cladistics 27:150-164.
    • (2011) Cladistics , vol.27 , pp. 150-164
    • Nicolalde-Morejón, F.1
  • 42
    • 0020658540 scopus 로고
    • Chloroplast DNA exists in two orientations
    • Palmer JD. 1983. Chloroplast DNA exists in two orientations. Nature 301:92-93.
    • (1983) Nature , vol.301 , pp. 92-93
    • Palmer, J.D.1
  • 43
    • 0036929260 scopus 로고    scopus 로고
    • Evolutionary re-organisation of a large operon in adzuki bean chloroplast DNA caused by inverted repeat movement
    • Perry AS, Brennan S, Murphy DJ, Kavanagh TA, Wolfe KH. 2002. Evolutionary re-organisation of a large operon in adzuki bean chloroplast DNA caused by inverted repeat movement. DNA Res. 9:157-162.
    • (2002) DNA Res , vol.9 , pp. 157-162
    • Perry, A.S.1    Brennan, S.2    Murphy, D.J.3    Kavanagh, T.A.4    Wolfe, K.H.5
  • 44
    • 0036840720 scopus 로고    scopus 로고
    • Nucleotide substitution rates in legume chloroplast DNA depend on the presence of the inverted repeat
    • Perry AS, Wolfe KH. 2002. Nucleotide substitution rates in legume chloroplast DNA depend on the presence of the inverted repeat. J Mol Evol. 55:501-508.
    • (2002) J Mol Evol , vol.55 , pp. 501-508
    • Perry, A.S.1    Wolfe, K.H.2
  • 45
    • 84866406851 scopus 로고    scopus 로고
    • Evidence for widespread GC-biased gene conversion in eukaryotes
    • Pessia E, et al. 2012. Evidence for widespread GC-biased gene conversion in eukaryotes. Genome Biol Evol. 4:675-682.
    • (2012) Genome Biol Evol , vol.4 , pp. 675-682
    • Pessia, E.1
  • 46
  • 47
    • 81055139712 scopus 로고    scopus 로고
    • Living fossil younger than thought
    • Renner SS. 2011. Living fossil younger than thought. Science 334:766-767.
    • (2011) Science , vol.334 , pp. 766-767
    • Renner, S.S.1
  • 48
    • 42649090839 scopus 로고    scopus 로고
    • DNA barcoding in the cycadales: Testing the potential of proposed barcoding markers for species identification of cycads
    • Sass C, Little DP, Stevenson DW, Specht CD. 2007. DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads. PLoS One 2:e1154.
    • (2007) PLoS One , vol.2 , pp. e1154
    • Sass, C.1    Little, D.P.2    Stevenson, D.W.3    Specht, C.D.4
  • 49
    • 23144460836 scopus 로고    scopus 로고
    • The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
    • Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686-689.
    • (2005) Nucleic Acids Res , vol.33 , pp. W686-W689
    • Schattner, P.1    Brooks, A.N.2    Lowe, T.M.3
  • 50
    • 84863111501 scopus 로고    scopus 로고
    • Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene
    • Sloan DB, Alverson AJ, Wu M, Palmer JD, Taylor DR. 2012. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene. Genome Biol Evol. 4:294-306.
    • (2012) Genome Biol Evol , vol.4 , pp. 294-306
    • Sloan, D.B.1    Alverson, A.J.2    Wu, M.3    Palmer, J.D.4    Taylor, D.R.5
  • 51
    • 70849112619 scopus 로고    scopus 로고
    • Unparalleled GC content in the plastid DNA of Selaginella
    • Smith DR. 2009. Unparalleled GC content in the plastid DNA of Selaginella. Plant Mol Biol. 71:627-639.
    • (2009) Plant Mol Biol , vol.71 , pp. 627-639
    • Smith, D.R.1
  • 52
    • 84876158905 scopus 로고    scopus 로고
    • Updating our view of organelle genome nucleotide landscape
    • Smith DR. 2012. Updating our view of organelle genome nucleotide landscape. Front Genet. 3:175.
    • (2012) Front Genet , vol.3 , pp. 175
    • Smith, D.R.1
  • 53
    • 39749186643 scopus 로고    scopus 로고
    • Mitochondrial genome of the colorless green alga Polytomella capuana: A linear molecule with an unprecedented GC content
    • Smith DR, Lee RW. 2008. Mitochondrial genome of the colorless green alga Polytomella capuana: a linear molecule with an unprecedented GC content. Mol Biol Evol. 25:487-496.
    • (2008) Mol Biol Evol , vol.25 , pp. 487-496
    • Smith, D.R.1    Lee, R.W.2
  • 54
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, et al. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 55
    • 84862998369 scopus 로고    scopus 로고
    • An AT mutational bias in the tiny GC-rich endosymbiont genome of Hodgkinia
    • Van Leuven JT, McCutcheon JP. 2012. An AT mutational bias in the tiny GC-rich endosymbiont genome of Hodgkinia. Genome Biol Evol. 4:24-27.
    • (2012) Genome Biol Evol , vol.4 , pp. 24-27
    • Van Leuven, J.T.1    McCutcheon, J.P.2
  • 56
    • 0023462635 scopus 로고
    • Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
    • Wolfe KH, Li WH, Sharp PM. 1987. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci U S A. 84:9054-9058.
    • (1987) Proc Natl Acad Sci U S A , vol.84 , pp. 9054-9058
    • Wolfe, K.H.1    Li, W.H.2    Sharp, P.M.3
  • 57
    • 84896401436 scopus 로고    scopus 로고
    • Highly rearranged and size-variable chloroplast genomes in conifers II clade (cupressophytes): Evolution towards shorter intergenic spacers
    • Wu CS, Chaw SM. 2014. Highly rearranged and size-variable chloroplast genomes in conifers II clade (cupressophytes): evolution towards shorter intergenic spacers. Plant Biotechnol J. 12:344-353.
    • (2014) Plant Biotechnol J , vol.12 , pp. 344-353
    • Wu, C.S.1    Chaw, S.M.2
  • 58
    • 84855848337 scopus 로고    scopus 로고
    • Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny
    • Wu CS, Wang YN, Hsu CY, Lin CP, Chaw SM. 2011. Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny. Genome Biol Evol. 3:1284-1295.
    • (2011) Genome Biol Evol , vol.3 , pp. 1284-1295
    • Wu, C.S.1    Wang, Y.N.2    Hsu, C.Y.3    Lin, C.P.4    Chaw, S.M.5
  • 59
    • 34548108492 scopus 로고    scopus 로고
    • Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: Insights into cpDNA evolution and phylogeny of extant seed plants
    • Wu CS, Wang YN, Liu SM, Chaw SM. 2007. Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: insights into cpDNA evolution and phylogeny of extant seed plants. Mol Biol Evol. 24:1366-1379.
    • (2007) Mol Biol Evol , vol.24 , pp. 1366-1379
    • Wu, C.S.1    Wang, Y.N.2    Liu, S.M.3    Chaw, S.M.4
  • 60
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252-3255.
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 61
    • 84879388598 scopus 로고    scopus 로고
    • DAMBE5: A comprehensive software package for data analysis in molecular biology and evolution
    • Xia X. 2013. DAMBE5: a comprehensive software package for data analysis in molecular biology and evolution. Mol Biol Evol. 30:1720-1728.
    • (2013) Mol Biol Evol , vol.30 , pp. 1720-1728
    • Xia, X.1
  • 62
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24: 1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 63
    • 84899580564 scopus 로고    scopus 로고
    • Unprecedented heterogeneity in the synonymous substitution rate within a plant genome
    • Zhu A, Guo W, Jain K, Mower JP. 2014. Unprecedented heterogeneity in the synonymous substitution rate within a plant genome. Mol Biol Evol. 31:1228-1236..
    • (2014) Mol Biol Evol , vol.31 , pp. 1228-1236
    • Zhu, A.1    Guo, W.2    Jain, K.3    Mower, J.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.