-
1
-
-
84856699863
-
Unpairing and gating: Sequence-independent substrate recognition by FEN superfamily nucleases
-
Grasby, J. A., Finger, L. D., Tsutakawa, S. E., Atack, J. M., and Tainer, J. A. (2012) Unpairing and gating: sequence-independent substrate recognition by FEN superfamily nucleases. Trends Biochem. Sci. 37, 74-84
-
(2012)
Trends Biochem. Sci.
, vol.37
, pp. 74-84
-
-
Grasby, J.A.1
Finger, L.D.2
Tsutakawa, S.E.3
Atack, J.M.4
Tainer, J.A.5
-
3
-
-
79951573439
-
Functional regulation of FEN1 nuclease and its link to cancer
-
Zheng, L., Jia, J., Finger, L. D., Guo, Z., Zer, C., and Shen, B. (2011) Functional regulation of FEN1 nuclease and its link to cancer. Nucleic Acids Res. 39, 781-794
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 781-794
-
-
Zheng, L.1
Jia, J.2
Finger, L.D.3
Guo, Z.4
Zer, C.5
Shen, B.6
-
4
-
-
84879797817
-
The wonders of flap endonucleases: Structure, function, mechanism, and regulation
-
(MacNeill, S., ed) Springer-Verlag, New York Inc., New York
-
Finger, L. D., Atack, J. M., Tsutakawa, S., Classen, S., Tainer, J., Grasby, J., and Shen, B. (2012) The wonders of flap endonucleases: structure, function, mechanism, and regulation. In The Eukaryotic Replisome: A Guide to Protein Structure and Function (MacNeill, S., ed) pp. 301-326, Springer-Verlag, New York Inc., New York
-
(2012)
The Eukaryotic Replisome: A Guide to Protein Structure and Function.
, pp. 301-326
-
-
Finger, L.D.1
Atack, J.M.2
Tsutakawa, S.3
Classen, S.4
Tainer, J.5
Grasby, J.6
Shen, B.7
-
5
-
-
77953262571
-
Substrate recognition and catalysis by flap endonucleases and related enzymes
-
Tomlinson, C. G., Atack, J. M., Chapados, B., Tainer, J. A., and Grasby, J. A. (2010) Substrate recognition and catalysis by flap endonucleases and related enzymes. Biochem. Soc. Trans. 38, 433-437
-
(2010)
Biochem. Soc. Trans.
, vol.38
, pp. 433-437
-
-
Tomlinson, C.G.1
Atack, J.M.2
Chapados, B.3
Tainer, J.A.4
Grasby, J.A.5
-
6
-
-
0033597786
-
A comparison of eubacterial and archaeal structure-specific 5′-exonucleases
-
Kaiser, M. W., Lyamicheva, N., Ma, W., Miller, C., Neri, B., Fors, L., and Lyamichev, V. I. (1999) A comparison of eubacterial and archaeal structure-specific 5′-exonucleases. J. Biol. Chem. 274, 21387-21394
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 21387-21394
-
-
Kaiser, M.W.1
Lyamicheva, N.2
Ma, W.3
Miller, C.4
Neri, B.5
Fors, L.6
Lyamichev, V.I.7
-
7
-
-
0742321956
-
Structural basis for FEN-1 substrate specificity and PCNA-mediated activation in DNA replication and repair
-
Chapados, B. R., Hosfield, D. J., Han, S., Qiu, J., Yelent, B., Shen, B., and Tainer, J. A. (2004) Structural basis for FEN-1 substrate specificity and PCNA-mediated activation in DNA replication and repair. Cell 116, 39-50
-
(2004)
Cell
, vol.116
, pp. 39-50
-
-
Chapados, B.R.1
Hosfield, D.J.2
Han, S.3
Qiu, J.4
Yelent, B.5
Shen, B.6
Tainer, J.A.7
-
8
-
-
79953894934
-
Human flap endonuclease structures, DNA double-base flipping, and a unified understanding of the FEN1 superfamily
-
Tsutakawa, S. E., Classen, S., Chapados, B. R., Arvai, A. S., Finger, L. D., Guenther, G., Tomlinson, C. G., Thompson, P., Sarker, A. H., Shen, B., Cooper, P. K., Grasby, J. A., and Tainer, J. A. (2011) Human flap endonuclease structures, DNA double-base flipping, and a unified understanding of the FEN1 superfamily. Cell 145, 198-211
-
(2011)
Cell
, vol.145
, pp. 198-211
-
-
Tsutakawa, S.E.1
Classen, S.2
Chapados, B.R.3
Arvai, A.S.4
Finger, L.D.5
Guenther, G.6
Tomlinson, C.G.7
Thompson, P.8
Sarker, A.H.9
Shen, B.10
Cooper, P.K.11
Grasby, J.A.12
Tainer, J.A.13
-
9
-
-
84896729143
-
Single-molecule characterization of Fen1 and Fen1/PCNA complexes acting on flap substrates
-
Craggs, T. D., Hutton, R. D., Brenlla, A., White, M. F., and Penedo, J. C. (2014) Single-molecule characterization of Fen1 and Fen1/PCNA complexes acting on flap substrates. Nucleic Acids Res. 42, 1857-1872
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 1857-1872
-
-
Craggs, T.D.1
Hutton, R.D.2
Brenlla, A.3
White, M.F.4
Penedo, J.C.5
-
10
-
-
84879800216
-
Sequential and multistep substrate interrogation provides the scaffold for specificity in human flap endonuclease 1
-
Sobhy, M. A., Joudeh, L. I., Huang, X., Takahashi, M., and Hamdan, S. M. (2013) Sequential and multistep substrate interrogation provides the scaffold for specificity in human flap endonuclease 1. Cell Reports 3, 1785-1794
-
(2013)
Cell Reports
, vol.3
, pp. 1785-1794
-
-
Sobhy, M.A.1
Joudeh, L.I.2
Huang, X.3
Takahashi, M.4
Hamdan, S.M.5
-
11
-
-
79953838905
-
Structures of human exonuclease 1 DNA complexes suggest a unified mechanism for nuclease family
-
Orans, J., McSweeney, E. A., Iyer, R. R., Hast, M. A., Hellinga, H. W., Modrich, P., and Beese, L. S. (2011) Structures of human exonuclease 1 DNA complexes suggest a unified mechanism for nuclease family. Cell 145, 212-223
-
(2011)
Cell
, vol.145
, pp. 212-223
-
-
Orans, J.1
McSweeney, E.A.2
Iyer, R.R.3
Hast, M.A.4
Hellinga, H.W.5
Modrich, P.6
Beese, L.S.7
-
12
-
-
84861557214
-
Flap endonucleases pass 5′-flaps through a flexible arch using a disorder-thread-order mechanism to confer specificity for free 5′-ends
-
Patel, N., Atack, J. M., Finger, L. D., Exell, J. C., Thompson, P., Tsutakawa, S., Tainer, J. A., Williams, D. M., and Grasby, J. A. (2012) Flap endonucleases pass 5′-flaps through a flexible arch using a disorder-thread-order mechanism to confer specificity for free 5′-ends. Nucleic Acids Res. 40, 4507-4519
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4507-4519
-
-
Patel, N.1
Atack, J.M.2
Finger, L.D.3
Exell, J.C.4
Thompson, P.5
Tsutakawa, S.6
Tainer, J.A.7
Williams, D.M.8
Grasby, J.A.9
-
13
-
-
84888367466
-
Proline scanning mutagenesis reveals a role for the flap endonuclease-1 helical cap in substrate unpairing
-
Patel, N., Exell, J. C., Jardine, E., Ombler, B., Finger, L. D., Ciani, B., and Grasby, J. A. (2013) Proline scanning mutagenesis reveals a role for the flap endonuclease-1 helical cap in substrate unpairing. J. Biol. Chem. 288, 34239-34248
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 34239-34248
-
-
Patel, N.1
Exell, J.C.2
Jardine, E.3
Ombler, B.4
Finger, L.D.5
Ciani, B.6
Grasby, J.A.7
-
14
-
-
78049375876
-
Flap endonuclease 1 mechanism analysis indicates flap base binding prior to threading
-
Gloor, J. W., Balakrishnan, L., and Bambara, R. A. (2010) Flap endonuclease 1 mechanism analysis indicates flap base binding prior to threading. J. Biol. Chem. 285, 34922-34931
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 34922-34931
-
-
Gloor, J.W.1
Balakrishnan, L.2
Bambara, R.A.3
-
15
-
-
57649134968
-
Three metal ions participate in T5 flap endonuclease catalysed DNA hydrolysis
-
Syson, K., Tomlinson, C., Chapados, B. R., Sayers, J. R., Tainer, J. A., Williams, N. H., and Grasby, J. A. (2008) Three metal ions participate in T5 flap endonuclease catalysed DNA hydrolysis. J. Biol. Chem. 283, 28741-28746
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 28741-28746
-
-
Syson, K.1
Tomlinson, C.2
Chapados, B.R.3
Sayers, J.R.4
Tainer, J.A.5
Williams, N.H.6
Grasby, J.A.7
-
16
-
-
84865029242
-
Interstrand disulfide crosslinking of DNA bases supports a double nucleotide unpairing mechanism for flap endonucleases
-
Beddows, A., Patel, N., Finger, L. D., Atack, J. M., Williams, D. M., and Grasby, J. A. (2012) Interstrand disulfide crosslinking of DNA bases supports a double nucleotide unpairing mechanism for flap endonucleases. Chem. Comm. 48, 8895-8897
-
(2012)
Chem. Comm.
, vol.48
, pp. 8895-8897
-
-
Beddows, A.1
Patel, N.2
Finger, L.D.3
Atack, J.M.4
Williams, D.M.5
Grasby, J.A.6
-
17
-
-
84888309658
-
Observation of unpaired substrate DNA in the flap endonuclease-1 active site
-
Finger, L. D., Patel, N., Beddows, A., Ma, L., Exell, J. C., Jardine, E., Jones, A. C., and Grasby, J. A. (2013) Observation of unpaired substrate DNA in the flap endonuclease-1 active site. Nucleic Acids Res. 41, 9839-9847
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 9839-9847
-
-
Finger, L.D.1
Patel, N.2
Beddows, A.3
Ma, L.4
Exell, J.C.5
Jardine, E.6
Jones, A.C.7
Grasby, J.A.8
-
18
-
-
84870852782
-
A toolkit and benchmark study for FRET-restrained high-precision structural modeling
-
Kalinin, S., Peulen, T., Sindbert, S., Rothwell, P. J., Berger, S., Restle, T., Goody, R. S., Gohlke, H., and Seidel, C. A. (2012) A toolkit and benchmark study for FRET-restrained high-precision structural modeling. Nat. Methods 9, 1218-1225
-
(2012)
Nat. Methods
, vol.9
, pp. 1218-1225
-
-
Kalinin, S.1
Peulen, T.2
Sindbert, S.3
Rothwell, P.J.4
Berger, S.5
Restle, T.6
Goody, R.S.7
Gohlke, H.8
Seidel, C.A.9
-
19
-
-
0026639433
-
Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction
-
Clegg, R. M., Murchie, A. I., Zechel, A., Carlberg, C., Diekmann, S., and Lilley, D. M. (1992) Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction. Biochemistry 31, 4846-4856
-
(1992)
Biochemistry
, vol.31
, pp. 4846-4856
-
-
Clegg, R.M.1
Murchie, A.I.2
Zechel, A.3
Carlberg, C.4
Diekmann, S.5
Lilley, D.M.6
-
20
-
-
69249114613
-
The 3′-flap pocket of human flap endonuclease 1 is critical for substrate binding and catalysis
-
Finger, L. D., Blanchard, M. S., Theimer, C. A., Sengerová, B., Singh, P., Chavez, V., Liu, F., Grasby, J. A., and Shen, B. (2009) The 3′-flap pocket of human flap endonuclease 1 is critical for substrate binding and catalysis. J. Biol. Chem. 284, 22184-22194
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 22184-22194
-
-
Finger, L.D.1
Blanchard, M.S.2
Theimer, C.A.3
Sengerová, B.4
Singh, P.5
Chavez, V.6
Liu, F.7
Grasby, J.A.8
Shen, B.9
-
21
-
-
0037414433
-
Modelling of flap endonuclease interactions with DNA substrate
-
Allawi, H. T., Kaiser, M. W., Onufriev, A. V., Ma, W. P., Brogaard, A. E., Case, D. A., Neri, B. P., and Lyamichev, V. I. (2003) Modelling of flap endonuclease interactions with DNA substrate. J. Mol. Biol. 328, 537-554
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 537-554
-
-
Allawi, H.T.1
Kaiser, M.W.2
Onufriev, A.V.3
Ma, W.P.4
Brogaard, A.E.5
Case, D.A.6
Neri, B.P.7
Lyamichev, V.I.8
-
22
-
-
80052258482
-
Neutralizing mutations of carboxylates that bind metal 2 in T5 flap endonuclease result in an enzyme that still requires two metal ions
-
Tomlinson, C. G., Syson, K., Sengerová, B., Atack, J. M., Sayers, J. R., Swanson, L., Tainer, J. A., Williams, N. H., and Grasby, J. A. (2011) Neutralizing mutations of carboxylates that bind metal 2 in T5 flap endonuclease result in an enzyme that still requires two metal ions. J. Biol. Chem. 286, 30878-30887
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 30878-30887
-
-
Tomlinson, C.G.1
Syson, K.2
Sengerová, B.3
Atack, J.M.4
Sayers, J.R.5
Swanson, L.6
Tainer, J.A.7
Williams, N.H.8
Grasby, J.A.9
-
23
-
-
77956593050
-
Brønsted analysis and rate-limiting steps for the T5 flap endonuclease catalyzed hydrolysis of exonucleolytic substrates
-
Sengerová, B., Tomlinson, C., Atack, J. M., Williams, R., Sayers, J. R., Williams, N. H., and Grasby, J. A. (2010) Brønsted analysis and rate-limiting steps for the T5 flap endonuclease catalyzed hydrolysis of exonucleolytic substrates. Biochemistry 49, 8085-8093
-
(2010)
Biochemistry
, vol.49
, pp. 8085-8093
-
-
Sengerová, B.1
Tomlinson, C.2
Atack, J.M.3
Williams, R.4
Sayers, J.R.5
Williams, N.H.6
Grasby, J.A.7
-
24
-
-
63149185297
-
Spectroscopic studies of position-specific DNA "breathing" fluctuations at replication forks and primer-template junctions
-
Jose, D., Datta, K., Johnson, N. P., and von Hippel, P. H. (2009) Spectroscopic studies of position-specific DNA "breathing" fluctuations at replication forks and primer-template junctions. Proc. Natl. Acad. Sci. U.S.A. 106, 4231-4236
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 4231-4236
-
-
Jose, D.1
Datta, K.2
Johnson, N.P.3
Von Hippel, P.H.4
-
25
-
-
1542409015
-
Low-energy circular dichroism of 2-aminopurine dinucleotide as a probe of local conformation ofDNAand RNA
-
Johnson, N. P., Baase, W. A., and Von Hippel, P. H. (2004) Low-energy circular dichroism of 2-aminopurine dinucleotide as a probe of local conformation ofDNAand RNA. Proc. Natl. Acad. Sci. U.S.A. 101, 3426-3431
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 3426-3431
-
-
Johnson, N.P.1
Baase, W.A.2
Von Hippel, P.H.3
|