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Volumn 43, Issue 22, 2015, Pages 10952-10962

Dynamic modulation of Dnmt2-dependent tRNA methylation by the micronutrient queuine

Author keywords

[No Author keywords available]

Indexed keywords

DNA METHYLTRANSFERASE; DNMA PROTEIN; DNMT2 PROTEIN; GLYCOSYLTRANSFERASE; GUANINE TRANSGLYCOSYLASE; PMT1 PROTEIN; QUEUINE; TRACE ELEMENT; TRANSFER RNA; UNCLASSIFIED DRUG; ASPARTIC ACID TRANSFER RNA; DNA (CYTOSINE 5) METHYLTRANSFERASE; GUANINE; PMT1 PROTEIN, S POMBE; QUEUINE TRNA-RIBOSYLTRANSFERASE; SCHIZOSACCHAROMYCES POMBE PROTEIN;

EID: 84964411293     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv980     Document Type: Article
Times cited : (73)

References (51)
  • 1
    • 77953656943 scopus 로고    scopus 로고
    • Trna stabilization by modified nucleotides
    • Motorin, Y. and Helm, M. (2010) tRNA stabilization by modified nucleotides. Biochemistry, 49, 4934-4944.
    • (2010) Biochemistry , vol.49 , pp. 4934-4944
    • Motorin, Y.1    Helm, M.2
  • 2
    • 84870152928 scopus 로고    scopus 로고
    • Biosynthesis and function of posttranscriptional modifications of transfer RNAs
    • El Yacoubi, B., Bailly, M. and De Crecy-Lagard, V. (2012) Biosynthesis and function of posttranscriptional modifications of transfer RNAs. Annu. Rev. Genet., 46, 69-95.
    • (2012) Annu. Rev. Genet. , vol.46 , pp. 69-95
    • El Yacoubi, B.1    Bailly, M.2    De Crecy-Lagard, V.3
  • 3
    • 84864828979 scopus 로고    scopus 로고
    • Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins
    • Chan, C. T., Pang, Y. L., Deng, W., Babu, I. R., Dyavaiah, M., Begley, T. J. and Dedon, P. C. (2012) Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins. Nat. Commun., 3, 937.
    • (2012) Nat. Commun. , vol.3 , pp. 937
    • Chan, C.T.1    Pang, Y.L.2    Deng, W.3    Babu, I.R.4    Dyavaiah, M.5    Begley, T.J.6    Dedon, P.C.7
  • 4
    • 84871436566 scopus 로고    scopus 로고
    • Transfer RNA modifications: Nature's combinatorial chemistry playground
    • Jackman, J. E. and Alfonzo, J. D. (2013) Transfer RNA modifications: nature's combinatorial chemistry playground. Wiley Interdiscip. Rev. RNA, 4, 35-48.
    • (2013) Wiley Interdiscip. Rev. RNA , vol.4 , pp. 35-48
    • Jackman, J.E.1    Alfonzo, J.D.2
  • 6
    • 74049130225 scopus 로고    scopus 로고
    • Solving the Dnmt2 enigma
    • Schaefer, M. and Lyko, F. (2010) Solving the Dnmt2 enigma. Chromosoma, 119, 35-40.
    • (2010) Chromosoma , vol.119 , pp. 35-40
    • Schaefer, M.1    Lyko, F.2
  • 7
    • 82355183876 scopus 로고    scopus 로고
    • On the evolutionary origin of eukaryotic DNA methyltransferases and Dnmt2
    • Jurkowski, T. P. and Jeltsch, A. (2011) On the evolutionary origin of eukaryotic DNA methyltransferases and Dnmt2. PLoS One, 6, e28104.
    • (2011) PLoS One , vol.6 , pp. e28104
    • Jurkowski, T.P.1    Jeltsch, A.2
  • 9
    • 47949107313 scopus 로고    scopus 로고
    • Human DNMT2 methylates tRNA (Asp) molecules using a DNA methyltransferase-like catalytic mechanism
    • Jurkowski, T. P., Meusburger, M., Phalke, S., Helm, M., Nellen, W., Reuter, G. and Jeltsch, A. (2008) Human DNMT2 methylates tRNA (Asp) molecules using a DNA methyltransferase-like catalytic mechanism. RNA, 14, 1663-1670.
    • (2008) RNA , vol.14 , pp. 1663-1670
    • Jurkowski, T.P.1    Meusburger, M.2    Phalke, S.3    Helm, M.4    Nellen, W.5    Reuter, G.6    Jeltsch, A.7
  • 10
    • 77955884641 scopus 로고    scopus 로고
    • RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
    • Schaefer, M., Pollex, T., Hanna, K., Tuorto, F., Meusburger, M., Helm, M. and Lyko, F. (2010) RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. Genes Dev., 24, 1590-1595.
    • (2010) Genes Dev. , vol.24 , pp. 1590-1595
    • Schaefer, M.1    Pollex, T.2    Hanna, K.3    Tuorto, F.4    Meusburger, M.5    Helm, M.6    Lyko, F.7
  • 11
    • 84885935618 scopus 로고    scopus 로고
    • Target recognition, RNA methylation activity and transcriptional regulation of the Dictyostelium discoideum Dnmt2-homologue (DnmA)
    • Muller, S., Windhof, I. M., Maximov, V., Jurkowski, T., Jeltsch, A., Forstner, K. U., Sharma, C. M., Graf, R. and Nellen, W. (2013) Target recognition, RNA methylation activity and transcriptional regulation of the Dictyostelium discoideum Dnmt2-homologue (DnmA). Nucleic Acids Res., 41, 8615-8627.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 8615-8627
    • Muller, S.1    Windhof, I.M.2    Maximov, V.3    Jurkowski, T.4    Jeltsch, A.5    Forstner, K.U.6    Sharma, C.M.7    Graf, R.8    Nellen, W.9
  • 12
    • 80055110894 scopus 로고    scopus 로고
    • In vitro tRNA methylation assay with the Entamoeba histolytica DNA and tRNA methyltransferase Dnmt2 (Ehmeth) enzyme
    • Tovy, A., Hofmann, B., Helm, M. and Ankri, S. (2010) In vitro tRNA methylation assay with the Entamoeba histolytica DNA and tRNA methyltransferase Dnmt2 (Ehmeth) enzyme. J. Vis. Exp., 44, e2390.
    • (2010) J. Vis. Exp. , vol.44 , pp. e2390
    • Tovy, A.1    Hofmann, B.2    Helm, M.3    Ankri, S.4
  • 14
    • 84871235870 scopus 로고    scopus 로고
    • Pmt1, a Dnmt2 homolog in Schizosaccharomyces pombe, mediates tRNA methylation in response to nutrient signaling
    • Becker, M., Muller, S., Nellen, W., Jurkowski, T. P., Jeltsch, A. and Ehrenhofer-Murray, A. E. (2012) Pmt1, a Dnmt2 homolog in Schizosaccharomyces pombe, mediates tRNA methylation in response to nutrient signaling. Nucleic Acids Res., 40, 11648-11658.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 11648-11658
    • Becker, M.1    Muller, S.2    Nellen, W.3    Jurkowski, T.P.4    Jeltsch, A.5    Ehrenhofer-Murray, A.E.6
  • 15
    • 84874659838 scopus 로고    scopus 로고
    • Efficient RNA virus control in Drosophila requires the RNA methyltransferase Dnmt2
    • Durdevic, Z., Hanna, K., Gold, B., Pollex, T., Cherry, S., Lyko, F. and Schaefer, M. (2013) Efficient RNA virus control in Drosophila requires the RNA methyltransferase Dnmt2. EMBO Rep., 14, 269-275.
    • (2013) EMBO Rep. , vol.14 , pp. 269-275
    • Durdevic, Z.1    Hanna, K.2    Gold, B.3    Pollex, T.4    Cherry, S.5    Lyko, F.6    Schaefer, M.7
  • 16
    • 67349217819 scopus 로고    scopus 로고
    • Retrotransposon silencing and telomere integrity in somatic cells of Drosophila depends on the cytosine-5 methyltransferase DNMT2
    • Phalke, S., Nickel, O., Walluscheck, D., Hortig, F., Onorati, M. C. and Reuter, G. (2009) Retrotransposon silencing and telomere integrity in somatic cells of Drosophila depends on the cytosine-5 methyltransferase DNMT2. Nat. Genet., 41, 696-702.
    • (2009) Nat. Genet. , vol.41 , pp. 696-702
    • Phalke, S.1    Nickel, O.2    Walluscheck, D.3    Hortig, F.4    Onorati, M.C.5    Reuter, G.6
  • 17
    • 84878979469 scopus 로고    scopus 로고
    • Chromosome-specific nonrandom sister chromatid segregation during stem-cell division
    • Yadlapalli, S. and Yamashita, Y. M. (2013) Chromosome-specific nonrandom sister chromatid segregation during stem-cell division. Nature, 498, 251-254.
    • (2013) Nature , vol.498 , pp. 251-254
    • Yadlapalli, S.1    Yamashita, Y.M.2
  • 19
    • 84927945449 scopus 로고    scopus 로고
    • The queuine micronutrient: Charting a course from microbe to man
    • Fergus, C., Barnes, D., Alqasem, M. A. and Kelly, V. P. (2015) The queuine micronutrient: charting a course from microbe to man. Nutrients, 7, 2897-2929.
    • (2015) Nutrients , vol.7 , pp. 2897-2929
    • Fergus, C.1    Barnes, D.2    Alqasem, M.A.3    Kelly, V.P.4
  • 20
    • 18844429219 scopus 로고    scopus 로고
    • Transglycosylation: A mechanism for RNA modification (and editing?)
    • Garcia, G. A. and Kittendorf, J. D. (2005) Transglycosylation: a mechanism for RNA modification (and editing?). Bioorg. Chem., 33, 229-251.
    • (2005) Bioorg. Chem. , vol.33 , pp. 229-251
    • Garcia, G.A.1    Kittendorf, J.D.2
  • 21
    • 27744479717 scopus 로고    scopus 로고
    • Mechanism and substrate specificity of tRNA-guanine transglycosylases (TGTs): Trna-modifying enzymes from the three different kingdoms of life share a common catalytic mechanism
    • Stengl, B., Reuter, K. and Klebe, G. (2005) Mechanism and substrate specificity of tRNA-guanine transglycosylases (TGTs): tRNA-modifying enzymes from the three different kingdoms of life share a common catalytic mechanism. Chembiochem, 6, 1926-1939.
    • (2005) Chembiochem , vol.6 , pp. 1926-1939
    • Stengl, B.1    Reuter, K.2    Klebe, G.3
  • 22
    • 0019332704 scopus 로고
    • Effect of diet on the queuosine family of tRNAs of germ-free mice
    • Farkas, W. R. (1980) Effect of diet on the queuosine family of tRNAs of germ-free mice. J. Biol. Chem., 255, 6832-6835.
    • (1980) J. Biol. Chem. , vol.255 , pp. 6832-6835
    • Farkas, W.R.1
  • 23
    • 84924084262 scopus 로고    scopus 로고
    • A nutrient-driven tRNA modification alters translational fidelity and genome-wide protein coding across an animal genus
    • Zaborske, J. M., DuMont, V. L., Wallace, E. W., Pan, T., Aquadro, C. F. and Drummond, D. A. (2014) A nutrient-driven tRNA modification alters translational fidelity and genome-wide protein coding across an animal genus. PLoS Biol., 12, e1002015.
    • (2014) PLoS Biol. , vol.12 , pp. e1002015
    • Zaborske, J.M.1    Du Mont, V.L.2    Wallace, E.W.3    Pan, T.4    Aquadro, C.F.5    Drummond, D.A.6
  • 24
    • 4444271170 scopus 로고    scopus 로고
    • A versatile toolbox for PCR-based tagging of yeast genes: New fluorescent proteins, more markers and promoter substitution cassettes
    • Janke, C., Magiera, M. M., Rathfelder, N., Taxis, C., Reber, S., Maekawa, H., Moreno-Borchart, A., Doenges, G., Schwob, E., Schiebel, E. et al. (2004) A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes. Yeast, 21, 947-962.
    • (2004) Yeast , vol.21 , pp. 947-962
    • Janke, C.1    Magiera, M.M.2    Rathfelder, N.3    Taxis, C.4    Reber, S.5    Maekawa, H.6    Moreno-Borchart, A.7    Doenges, G.8    Schwob, E.9    Schiebel, E.10
  • 25
    • 0024296379 scopus 로고
    • Establishment of a transient expression system for Dictyostelium discoideum
    • Howard, P. K., Ahern, K. G. and Firtel, R. A. (1988) Establishment of a transient expression system for Dictyostelium discoideum. Nucleic Acids Res., 16, 2613-2623.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 2613-2623
    • Howard, P.K.1    Ahern, K.G.2    Firtel, R.A.3
  • 26
    • 34250765348 scopus 로고    scopus 로고
    • Transformation of Dictyostelium discoideum with plasmid DNA
    • Gaudet, P., Pilcher, K. E., Fey, P. and Chisholm, R. L. (2007) Transformation of Dictyostelium discoideum with plasmid DNA. Nat. Protoc., 2, 1317-1324.
    • (2007) Nat. Protoc. , vol.2 , pp. 1317-1324
    • Gaudet, P.1    Pilcher, K.E.2    Fey, P.3    Chisholm, R.L.4
  • 27
    • 84867548357 scopus 로고    scopus 로고
    • Concise and efficient syntheses of preQ1 base, Q base, and (ent)-Q base
    • Gerber, H. D. and Klebe, G. (2012) Concise and efficient syntheses of preQ1 base, Q base, and (ent)-Q base. Org. Biomol. Chem., 10, 8660-8668.
    • (2012) Org. Biomol. Chem. , vol.10 , pp. 8660-8668
    • Gerber, H.D.1    Klebe, G.2
  • 28
    • 59649120058 scopus 로고    scopus 로고
    • RNA cytosine methylation analysis by bisulfite sequencing
    • Schaefer, M., Pollex, T., Hanna, K. and Lyko, F. (2009) RNA cytosine methylation analysis by bisulfite sequencing. Nucleic Acids Res., 37, e12.
    • (2009) Nucleic Acids Res. , vol.37 , pp. e12
    • Schaefer, M.1    Pollex, T.2    Hanna, K.3    Lyko, F.4
  • 29
    • 70349866687 scopus 로고    scopus 로고
    • ShortRead: A bioconductor package for input, quality assessment and exploration of high-throughput sequence data
    • Morgan, M., Anders, S., Lawrence, M., Aboyoun, P., Pages, H. and Gentleman, R. (2009) ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics, 25, 2607-2608.
    • (2009) Bioinformatics , vol.25 , pp. 2607-2608
    • Morgan, M.1    Anders, S.2    Lawrence, M.3    Aboyoun, P.4    Pages, H.5    Gentleman, R.6
  • 30
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin, M. (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal, 17, 10-12.
    • (2011) EMBnet.journal , vol.17 , pp. 10-12
    • Martin, M.1
  • 31
    • 58149189877 scopus 로고    scopus 로고
    • GtRNAdb: A database of transfer RNA genes detected in genomic sequence
    • Chan, P. P. and Lowe, T. M. (2009) GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res., 37, D93-D97.
    • (2009) Nucleic Acids Res. , vol.37 , pp. D93-D97
    • Chan, P.P.1    Lowe, T.M.2
  • 32
    • 68949141599 scopus 로고    scopus 로고
    • BSMAP: Whole genome bisulfite sequence MAPping program
    • Xi, Y. and Li, W. (2009) BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinformatics, 10, 232.
    • (2009) BMC Bioinformatics , vol.10 , pp. 232
    • Xi, Y.1    Li, W.2
  • 33
    • 0024197850 scopus 로고
    • Novel salvage of queuine from queuosine and absence of queuine synthesis in Chlorella pyrenoidosa and Chlamydomonas reinhardtii
    • Kirtland, G. M., Morris, T. D., Moore, P. H., O'Brian, J. J., Edmonds, C. G., McCloskey, J. A. and Katze, J. R. (1988) Novel salvage of queuine from queuosine and absence of queuine synthesis in Chlorella pyrenoidosa and Chlamydomonas reinhardtii. J. Bacteriol., 170, 5633-5641.
    • (1988) J. Bacteriol. , vol.170 , pp. 5633-5641
    • Kirtland, G.M.1    Morris, T.D.2    Moore, P.H.3    O'Brian, J.J.4    Edmonds, C.G.5    McCloskey, J.A.6    Katze, J.R.7
  • 36
    • 84872584130 scopus 로고    scopus 로고
    • Trnahis 5-methylcytidine levels increase in response to several growth arrest conditions in Saccharomyces cerevisiae
    • Preston, M. A., D'Silva, S., Kon, Y. and Phizicky, E. M. (2013) tRNAHis 5-methylcytidine levels increase in response to several growth arrest conditions in Saccharomyces cerevisiae. RNA, 19, 243-256.
    • (2013) RNA , vol.19 , pp. 243-256
    • Preston, M.A.1    D'Silva, S.2    Kon, Y.3    Phizicky, E.M.4
  • 39
    • 84910675377 scopus 로고    scopus 로고
    • Trna modifications regulate translation during cellular stress
    • Gu, C., Begley, T. J. and Dedon, P. C. (2014) tRNA modifications regulate translation during cellular stress. FEBS Lett., 588, 4287-4296.
    • (2014) FEBS Lett. , vol.588 , pp. 4287-4296
    • Gu, C.1    Begley, T.J.2    Dedon, P.C.3
  • 40
    • 0019880102 scopus 로고
    • RNA processing in microinjected Xenopus oocytes. Sequential addition of base modifications in the spliced transfer RNA
    • Nishikura, K. and De Robertis, E. M. (1981) RNA processing in microinjected Xenopus oocytes. Sequential addition of base modifications in the spliced transfer RNA. J. Mol. Biol., 145, 405-420.
    • (1981) J. Mol. Biol. , vol.145 , pp. 405-420
    • Nishikura, K.1    De Robertis, E.M.2
  • 41
    • 0029050832 scopus 로고
    • C to U editing and modifications during the maturation of the mitochondrial tRNA (Asp) in marsupials
    • Morl, M., Dorner, M. and Paabo, S. (1995) C to U editing and modifications during the maturation of the mitochondrial tRNA (Asp) in marsupials. Nucleic Acids Res., 23, 3380-3384.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3380-3384
    • Morl, M.1    Dorner, M.2    Paabo, S.3
  • 42
    • 84920506759 scopus 로고    scopus 로고
    • Conservation of an intricate circuit for crucial modifications of the tRNAPhe anticodon loop in eukaryotes
    • Guy, M. P. and Phizicky, E. M. (2015) Conservation of an intricate circuit for crucial modifications of the tRNAPhe anticodon loop in eukaryotes. RNA, 21, 61-74.
    • (2015) RNA , vol.21 , pp. 61-74
    • Guy, M.P.1    Phizicky, E.M.2
  • 43
    • 84941582819 scopus 로고    scopus 로고
    • Identification of determinants for tRNA substrate recognition by Escherichia coli C/U34 2'-O-methyltransferase
    • Zhou, M., Long, T., Fang, Z. P., Zhou, X. L., Liu, R. J. and Wang, E. D. (2015) Identification of determinants for tRNA substrate recognition by Escherichia coli C/U34 2'-O-methyltransferase. RNA Biol., 12, 900-911.
    • (2015) RNA Biol. , vol.12 , pp. 900-911
    • Zhou, M.1    Long, T.2    Fang, Z.P.3    Zhou, X.L.4    Liu, R.J.5    Wang, E.D.6
  • 44
    • 0032925775 scopus 로고    scopus 로고
    • The effect of queuosine on tRNA structure and function
    • Morris, R. C., Brown, K. G. and Elliott, M. S. (1999) The effect of queuosine on tRNA structure and function. J. Biomol. Struct. Dyn., 16, 757-774.
    • (1999) J. Biomol. Struct. Dyn. , vol.16 , pp. 757-774
    • Morris, R.C.1    Brown, K.G.2    Elliott, M.S.3
  • 45
    • 84862529706 scopus 로고    scopus 로고
    • Trnaomics: Trna gene copy number variation and codon use provide bioinformatic evidence of a new anticodon: Codon wobble pair in a eukaryote
    • Iben, J. R. and Maraia, R. J. (2012) tRNAomics: tRNA gene copy number variation and codon use provide bioinformatic evidence of a new anticodon: codon wobble pair in a eukaryote. RNA, 18, 1358-1372.
    • (2012) RNA , vol.18 , pp. 1358-1372
    • Iben, J.R.1    Maraia, R.J.2
  • 46
    • 0345346377 scopus 로고    scopus 로고
    • Codon usage tabulated from international DNA sequence databases: Status for the year 2000
    • Nakamura, Y., Gojobori, T. and Ikemura, T. (2000) Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucleic Acids Res., 28, 292.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 292
    • Nakamura, Y.1    Gojobori, T.2    Ikemura, T.3
  • 47
    • 84964479843 scopus 로고    scopus 로고
    • Cytosine methylation of tRNA-Asp by DNMT2 has a role in translation of proteins containing poly-Asp sequences
    • Shanmugam, R., Fierer, J., Kaiser, S., Helm, M., Jurkowski, T. P. and Jeltsch, A. (2015) Cytosine methylation of tRNA-Asp by DNMT2 has a role in translation of proteins containing poly-Asp sequences. Cell Discov., 1, 15010.
    • (2015) Cell Discov. , vol.1 , pp. 15010
    • Shanmugam, R.1    Fierer, J.2    Kaiser, S.3    Helm, M.4    Jurkowski, T.P.5    Jeltsch, A.6
  • 49
    • 0033605708 scopus 로고    scopus 로고
    • A cytotoxic ribonuclease targeting specific transfer RNA anticodons
    • Ogawa, T., Tomita, K., Ueda, T., Watanabe, K., Uozumi, T. and Masaki, H. (1999) A cytotoxic ribonuclease targeting specific transfer RNA anticodons. Science, 283, 2097-2100.
    • (1999) Science , vol.283 , pp. 2097-2100
    • Ogawa, T.1    Tomita, K.2    Ueda, T.3    Watanabe, K.4    Uozumi, T.5    Masaki, H.6
  • 50
    • 0021886237 scopus 로고
    • Differential turnover of tRNAs of the queuosine family in Dictyostelium discoideum and its possible role in regulation
    • Ott, G. and Kersten, H. (1985) Differential turnover of tRNAs of the queuosine family in Dictyostelium discoideum and its possible role in regulation. Biol. Chem. Hoppe Seyler, 366, 69-76.
    • (1985) Biol. Chem. Hoppe Seyler , vol.366 , pp. 69-76
    • Ott, G.1    Kersten, H.2


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