-
1
-
-
0020037023
-
Queuine, a modified base incorporated posttranscriptionally into eukaryotic transfer RNA: Wide distribution in nature
-
Katze, J. R., Basile, B., and McCloskey, J. A. (1982) Queuine, a modified base incorporated posttranscriptionally into eukaryotic transfer RNA: wide distribution in nature Science 216, 55-56
-
(1982)
Science
, vol.216
, pp. 55-56
-
-
Katze, J.R.1
Basile, B.2
McCloskey, J.A.3
-
2
-
-
0020685722
-
Characterization and analysis of oncofetal tRNA and its possible application for cancer diagnosis and therapy
-
Nishimura, S., Shindo-Okada, N., Kasai, H., Kuchino, Y., Noguchi, S., Iigo, M., and Hoshi, A. (1983) Characterization and analysis of oncofetal tRNA and its possible application for cancer diagnosis and therapy Recent Results Cancer Res. 84, 401-412
-
(1983)
Recent Results Cancer Res.
, vol.84
, pp. 401-412
-
-
Nishimura, S.1
Shindo-Okada, N.2
Kasai, H.3
Kuchino, Y.4
Noguchi, S.5
Iigo, M.6
Hoshi, A.7
-
3
-
-
84870152928
-
Biosynthesis and function of posttranscriptional modifications of transfer RNAs
-
El Yacoubi, B., Bailly, M., and de Crécy-Lagard, V. (2012) Biosynthesis and function of posttranscriptional modifications of transfer RNAs Annu. Rev. Genet. 46, 69-95
-
(2012)
Annu. Rev. Genet.
, vol.46
, pp. 69-95
-
-
El Yacoubi, B.1
Bailly, M.2
De Crécy-Lagard, V.3
-
4
-
-
0017898288
-
Structure determination of a nucleoside Q precursor isolated from E. Coli tRNA: 7-(aminomethyl)-7-deazaguanosine
-
Okada, N., Noguchi, S., Nishimura, S., Ohgi, T., Goto, T., Crain, P. F., and McCloskey, J. A. (1978) Structure determination of a nucleoside Q precursor isolated from E. coli tRNA: 7-(aminomethyl)-7-deazaguanosine Nucleic Acids Res. 5, 2289-2296
-
(1978)
Nucleic Acids Res.
, vol.5
, pp. 2289-2296
-
-
Okada, N.1
Noguchi, S.2
Nishimura, S.3
Ohgi, T.4
Goto, T.5
Crain, P.F.6
McCloskey, J.A.7
-
5
-
-
0019975245
-
Isolation and characterization of an Escherichia coli mutant lacking tRNA-guanine transglycosylase. Function and biosynthesis of queuosine in tRNA
-
Noguchi, S., Nishimura, Y., Hirota, Y., and Nishimura, S. (1982) Isolation and characterization of an Escherichia coli mutant lacking tRNA-guanine transglycosylase. Function and biosynthesis of queuosine in tRNA J. Biol. Chem. 257, 6544-6550
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 6544-6550
-
-
Noguchi, S.1
Nishimura, Y.2
Hirota, Y.3
Nishimura, S.4
-
6
-
-
0028641310
-
TRNA-guanine transglycosylase from Escherichia coli: Recognition of dimeric, unmodified tRNA(Tyr)
-
Curnow, A. W. and Garcia, G. A. (1994) tRNA-guanine transglycosylase from Escherichia coli: recognition of dimeric, unmodified tRNA(Tyr) Biochimie 76, 1183-1191
-
(1994)
Biochimie
, vol.76
, pp. 1183-1191
-
-
Curnow, A.W.1
Garcia, G.A.2
-
7
-
-
0028113003
-
Transfer and isomerization of the ribose moiety of AdoMet during the biosynthesis of queuosine tRNAs, a new unique reaction catalyzed by the QueA protein from Escherichia coli
-
Slany, R. K., Bösl, M., and Kersten, H. (1994) Transfer and isomerization of the ribose moiety of AdoMet during the biosynthesis of queuosine tRNAs, a new unique reaction catalyzed by the QueA protein from Escherichia coli Biochimie 76, 389-393
-
(1994)
Biochimie
, vol.76
, pp. 389-393
-
-
Slany, R.K.1
Bösl, M.2
Kersten, H.3
-
8
-
-
79956306359
-
Discovery of epoxyqueuosine (oQ) reductase reveals parallels between halorespiration and tRNA modification
-
Miles, Z. D., McCarty, R. M., Molnar, G., and Bandarian, V. (2011) Discovery of epoxyqueuosine (oQ) reductase reveals parallels between halorespiration and tRNA modification Proc. Natl. Acad. Sci. U.S.A. 108, 7368-7372
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 7368-7372
-
-
Miles, Z.D.1
McCarty, R.M.2
Molnar, G.3
Bandarian, V.4
-
9
-
-
0019192352
-
Structure of an amniotic fluid component, 7-(4,5-cis-dihydroxy-1- cyclopenten-3-ylaminomethyl)-7-deazaguanine (queuine), a substrate for tRNA: Guanine transglycosylase
-
Crain, P. F., Sethi, S. K., Katze, J. R., and McCloskey, J. A. (1980) Structure of an amniotic fluid component, 7-(4,5-cis-dihydroxy-1-cyclopenten-3- ylaminomethyl)-7-deazaguanine (queuine), a substrate for tRNA: guanine transglycosylase J. Biol. Chem. 255, 8405-8407
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 8405-8407
-
-
Crain, P.F.1
Sethi, S.K.2
Katze, J.R.3
McCloskey, J.A.4
-
10
-
-
0013010677
-
TRNA-guanine transglycosylase and guanine-accepting transfer RNAs of Drosophila melanogaster
-
Farkas, W. R. and Bruce Jacobson, K. (1980) tRNA-guanine transglycosylase and guanine-accepting transfer RNAs of Drosophila melanogaster Insect Biochem. 10, 183-188
-
(1980)
Insect Biochem.
, vol.10
, pp. 183-188
-
-
Farkas, W.R.1
Bruce Jacobson, K.2
-
11
-
-
0020487735
-
Dictyostelium discoideum: A useful model system to evaluate the function of queuine and of the Q-family of tRNAs
-
Ott, G., Kersten, H., and Nishimura, S. (1982) Dictyostelium discoideum: a useful model system to evaluate the function of queuine and of the Q-family of tRNAs FEBS Lett. 146, 311-314
-
(1982)
FEBS Lett.
, vol.146
, pp. 311-314
-
-
Ott, G.1
Kersten, H.2
Nishimura, S.3
-
12
-
-
0020491382
-
Purification and properties of guanine, queuine-tRNA transglycosylase from wheat germ
-
Walden, T. L., Howes, N., and Farkas, W. R. (1982) Purification and properties of guanine, queuine-tRNA transglycosylase from wheat germ J. Biol. Chem. 257, 13218-13222
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 13218-13222
-
-
Walden, T.L.1
Howes, N.2
Farkas, W.R.3
-
13
-
-
0024197850
-
Novel salvage of queuine from queuosine and absence of queuine synthesis in Chlorella pyrenoidosa and Chlamydomonas reinhardtii
-
Kirtland, G. M., Morris, T. D., Moore, P. H., O'Brian, J. J., Edmonds, C. G., McCloskey, J. A., and Katze, J. R. (1988) Novel salvage of queuine from queuosine and absence of queuine synthesis in Chlorella pyrenoidosa and Chlamydomonas reinhardtii J. Bacteriol. 170, 5633-5641
-
(1988)
J. Bacteriol.
, vol.170
, pp. 5633-5641
-
-
Kirtland, G.M.1
Morris, T.D.2
Moore, P.H.3
O'Brian, J.J.4
Edmonds, C.G.5
McCloskey, J.A.6
Katze, J.R.7
-
14
-
-
34848816186
-
Diet-dependent depletion of queuosine in tRNAs in Caenorhabditis elegans does not lead to a developmental block
-
Gaur, R., Björk, G. R., Tuck, S., and Varshney, U. (2007) Diet-dependent depletion of queuosine in tRNAs in Caenorhabditis elegans does not lead to a developmental block J. Biosci. 32, 747-754
-
(2007)
J. Biosci.
, vol.32
, pp. 747-754
-
-
Gaur, R.1
Björk, G.R.2
Tuck, S.3
Varshney, U.4
-
15
-
-
34250192588
-
Crystal structures of tRNA-guanine transglycosylase (TGT) in complex with novel and potent inhibitors unravel pronounced induced-fit adaptations and suggest dimer formation upon substrate binding
-
Stengl, B., Meyer, E. A., Heine, A., Brenk, R., Diederich, F., and Klebe, G. (2007) Crystal structures of tRNA-guanine transglycosylase (TGT) in complex with novel and potent inhibitors unravel pronounced induced-fit adaptations and suggest dimer formation upon substrate binding J. Mol. Biol. 370, 492-511
-
(2007)
J. Mol. Biol.
, vol.370
, pp. 492-511
-
-
Stengl, B.1
Meyer, E.A.2
Heine, A.3
Brenk, R.4
Diederich, F.5
Klebe, G.6
-
16
-
-
27744479717
-
Mechanism and substrate specificity of tRNA-guanine transglycosylases (TGTs): TRNA-modifying enzymes from the three different kingdoms of life share a common catalytic mechanism
-
Stengl, B., Reuter, K., and Klebe, G. (2005) Mechanism and substrate specificity of tRNA-guanine transglycosylases (TGTs): tRNA-modifying enzymes from the three different kingdoms of life share a common catalytic mechanism ChemBioChem 6, 1926-1939
-
(2005)
ChemBioChem
, vol.6
, pp. 1926-1939
-
-
Stengl, B.1
Reuter, K.2
Klebe, G.3
-
17
-
-
77951184968
-
Characterization of the human tRNA-guanine transglycosylase: Confirmation of the heterodimeric subunit structure
-
Chen, Y.-C., Kelly, V. P., Stachura, S. V., and Garcia, G. A. (2010) Characterization of the human tRNA-guanine transglycosylase: confirmation of the heterodimeric subunit structure RNA 16, 958-968
-
(2010)
RNA
, vol.16
, pp. 958-968
-
-
Chen, Y.-C.1
Kelly, V.P.2
Stachura, S.V.3
Garcia, G.A.4
-
18
-
-
67650549741
-
Queuosine formation in eukaryotic tRNA occurs via a mitochondria- localized heteromeric transglycosylase
-
Boland, C., Hayes, P., Santa-Maria, I., Nishimura, S., and Kelly, V. P. (2009) Queuosine formation in eukaryotic tRNA occurs via a mitochondria- localized heteromeric transglycosylase J. Biol. Chem. 284, 18218-18227
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 18218-18227
-
-
Boland, C.1
Hayes, P.2
Santa-Maria, I.3
Nishimura, S.4
Kelly, V.P.5
-
19
-
-
0034788470
-
Queuosine modification of tRNA: A case for convergent evolution
-
Morris, R. C. and Elliott, M. S. (2001) Queuosine modification of tRNA: a case for convergent evolution Mol. Genet. Metab. 74, 147-159
-
(2001)
Mol. Genet. Metab.
, vol.74
, pp. 147-159
-
-
Morris, R.C.1
Elliott, M.S.2
-
20
-
-
0021362106
-
Queuine salvage in mammalian cells. Evidence that queuine is generated from queuosine 5′-phosphate
-
Gündüz, U. and Katze, J. R. (1984) Queuine salvage in mammalian cells. Evidence that queuine is generated from queuosine 5′-phosphate J. Biol. Chem. 259, 1110-1113
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 1110-1113
-
-
Gündüz, U.1
Katze, J.R.2
-
21
-
-
0021331057
-
Evidence that the nucleic acid base queuine is incorporated intact into tRNA by animal cells
-
Katze, J. R., Gündüz, U., Smith, D. L., Cheng, C. S., and McCloskey, J. A. (1984) Evidence that the nucleic acid base queuine is incorporated intact into tRNA by animal cells Biochemistry 23, 1171-1176
-
(1984)
Biochemistry
, vol.23
, pp. 1171-1176
-
-
Katze, J.R.1
Gündüz, U.2
Smith, D.L.3
Cheng, C.S.4
McCloskey, J.A.5
-
22
-
-
0020485425
-
Salvage of the nucleic acid base queuine from queuine-containing TRNA by animal cells
-
Gündüz, U. and Katze, J. R. (1982) Salvage of the nucleic acid base queuine from queuine-containing TRNA by animal cells Biochem. Biophys. Res. Commun. 109, 159-167
-
(1982)
Biochem. Biophys. Res. Commun.
, vol.109
, pp. 159-167
-
-
Gündüz, U.1
Katze, J.R.2
-
23
-
-
0001668782
-
The molecular basis for the differential translation of TMV RNA in tobacco protoplasts and wheat germ extracts
-
Beier, H., Barciszewska, M., and Sickinger, H. D. (1984) The molecular basis for the differential translation of TMV RNA in tobacco protoplasts and wheat germ extracts EMBO J. 3, 1091-1096
-
(1984)
EMBO J.
, vol.3
, pp. 1091-1096
-
-
Beier, H.1
Barciszewska, M.2
Sickinger, H.D.3
-
24
-
-
0020653505
-
Structure, biosynthesis, and function of queuosine in transfer RNA
-
Nishimura, S. (1983) Structure, biosynthesis, and function of queuosine in transfer RNA Prog. Nucleic Acid Res. Mol. Biol. 28, 49-73
-
(1983)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.28
, pp. 49-73
-
-
Nishimura, S.1
-
25
-
-
84867766741
-
Isotope-based analysis of modified tRNA nucleosides correlates modification density with translational efficiency
-
Brandmayr, C., Wagner, M., Brückl, T., Globisch, D., Pearson, D., Kneuttinger, A. C., Reiter, V., Hienzsch, A., Koch, S., Thoma, I., Thumbs, P., Michalakis, S., Müller, M., Biel, M., and Carell, T. (2012) Isotope-based analysis of modified tRNA nucleosides correlates modification density with translational efficiency Angew. Chem., Int. Ed. 51, 11162-11165
-
(2012)
Angew. Chem., Int. Ed.
, vol.51
, pp. 11162-11165
-
-
Brandmayr, C.1
Wagner, M.2
Brückl, T.3
Globisch, D.4
Pearson, D.5
Kneuttinger, A.C.6
Reiter, V.7
Hienzsch, A.8
Koch, S.9
Thoma, I.10
Thumbs, P.11
Michalakis, S.12
Müller, M.13
Biel, M.14
Carell, T.15
-
26
-
-
0020309012
-
Yeast cells cannot incorporate queuine into their tRNA
-
Walden, T., Reyniers, J. P., Hiatt, V., and Farkas, W. R. (1982) Yeast cells cannot incorporate queuine into their tRNA Proc. Soc. Exp. Biol. Med. 170, 328-332
-
(1982)
Proc. Soc. Exp. Biol. Med.
, vol.170
, pp. 328-332
-
-
Walden, T.1
Reyniers, J.P.2
Hiatt, V.3
Farkas, W.R.4
-
27
-
-
80053530267
-
Systems-based analysis of modified tRNA bases
-
Globisch, D., Pearson, D., Hienzsch, A., Brückl, T., Wagner, M., Thoma, I., Thumbs, P., Reiter, V., Kneuttinger, A. C., Müller, M., Sieber, S. A., and Carell, T. (2011) Systems-based analysis of modified tRNA bases Angew. Chem., Int. Ed. 50, 9739-9742
-
(2011)
Angew. Chem., Int. Ed.
, vol.50
, pp. 9739-9742
-
-
Globisch, D.1
Pearson, D.2
Hienzsch, A.3
Brückl, T.4
Wagner, M.5
Thoma, I.6
Thumbs, P.7
Reiter, V.8
Kneuttinger, A.C.9
Müller, M.10
Sieber, S.A.11
Carell, T.12
-
28
-
-
0025978946
-
Queuine metabolism and cadmium toxicity in Drosophila melanogaster
-
Siard, T. J., Jacobson, K. B., and Farkas, W. R. (1991) Queuine metabolism and cadmium toxicity in Drosophila melanogaster Biofactors 3, 41-47
-
(1991)
Biofactors
, vol.3
, pp. 41-47
-
-
Siard, T.J.1
Jacobson, K.B.2
Farkas, W.R.3
-
29
-
-
0021763102
-
Specific changes in lactate levels, lactate dehydrogenase patterns and cytochrome b559 in Dictyostelium discoideum caused by queuine
-
Schachner, E., Aschhoff, H. J., and Kersten, H. (1984) Specific changes in lactate levels, lactate dehydrogenase patterns and cytochrome b559 in Dictyostelium discoideum caused by queuine Eur. J. Biochem. 139, 481-487
-
(1984)
Eur. J. Biochem.
, vol.139
, pp. 481-487
-
-
Schachner, E.1
Aschhoff, H.J.2
Kersten, H.3
-
30
-
-
0021361117
-
Queuine deficiency and restoration in Dictyostelium discoideum and related early developmental changes
-
Schachner, E. and Kersten, H. (1984) Queuine deficiency and restoration in Dictyostelium discoideum and related early developmental changes Microbiology 130, 135-144
-
(1984)
Microbiology
, vol.130
, pp. 135-144
-
-
Schachner, E.1
Kersten, H.2
-
31
-
-
0031566184
-
Effects of a diet deficient in tyrosine and queuine on germfree mice
-
Marks, T. and Farkas, W. R. (1997) Effects of a diet deficient in tyrosine and queuine on germfree mice Biochem. Biophys. Res. Commun. 230, 233-237
-
(1997)
Biochem. Biophys. Res. Commun.
, vol.230
, pp. 233-237
-
-
Marks, T.1
Farkas, W.R.2
-
32
-
-
0023693171
-
The nutrient factor queuine: Biosynthesis, occurrence in transfer RNA and function
-
Kersten, H. (1988) The nutrient factor queuine: biosynthesis, occurrence in transfer RNA and function Biofactors 1, 27-29
-
(1988)
Biofactors
, vol.1
, pp. 27-29
-
-
Kersten, H.1
-
33
-
-
0022263499
-
Biosynthesis of tetrahydrobiopterin in man
-
Curtius, H. C., Heintel, D., Ghisla, S., Kuster, T., Leimbacher, W., and Niederwieser, A. (1985) Biosynthesis of tetrahydrobiopterin in man J. Inherit. Metab. Dis. 8 (Suppl 1) 28-33
-
(1985)
J. Inherit. Metab. Dis.
, vol.8
, Issue.SUPPL. 1
, pp. 28-33
-
-
Curtius, H.C.1
Heintel, D.2
Ghisla, S.3
Kuster, T.4
Leimbacher, W.5
Niederwieser, A.6
-
34
-
-
79957617194
-
Queuosine deficiency in eukaryotes compromises tyrosine production through increased tetrahydrobiopterin oxidation
-
Rakovich, T., Boland, C., Bernstein, I., Chikwana, V. M., Iwata-Reuyl, D., and Kelly, V. P. (2011) Queuosine deficiency in eukaryotes compromises tyrosine production through increased tetrahydrobiopterin oxidation J. Biol. Chem. 286, 19354-19363
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 19354-19363
-
-
Rakovich, T.1
Boland, C.2
Bernstein, I.3
Chikwana, V.M.4
Iwata-Reuyl, D.5
Kelly, V.P.6
-
35
-
-
75649124956
-
Queuosine modification of tRNA: Its divergent role in cellular machinery
-
Vinayak, M. and Pathak, C. (2010) Queuosine modification of tRNA: its divergent role in cellular machinery Biosci. Rep. 30, 135-148
-
(2010)
Biosci. Rep.
, vol.30
, pp. 135-148
-
-
Vinayak, M.1
Pathak, C.2
-
36
-
-
0021886237
-
Differential turnover of tRNAs of the queuosine family in Dictyostelium discoideum and its possible role in regulation
-
Ott, G. and Kersten, H. (1985) Differential turnover of tRNAs of the queuosine family in Dictyostelium discoideum and its possible role in regulation Biol. Chem. Hoppe-Seyler 366, 69-76
-
(1985)
Biol. Chem. Hoppe-Seyler
, vol.366
, pp. 69-76
-
-
Ott, G.1
Kersten, H.2
-
37
-
-
71849108697
-
Deciphering synonymous codons in the three domains of life: Co-evolution with specific tRNA modification enzymes
-
Grosjean, H., de Crécy-Lagard, V., and Marck, C. (2010) Deciphering synonymous codons in the three domains of life: co-evolution with specific tRNA modification enzymes FEBS Lett. 584, 252-264
-
(2010)
FEBS Lett.
, vol.584
, pp. 252-264
-
-
Grosjean, H.1
De Crécy-Lagard, V.2
Marck, C.3
-
38
-
-
34547886845
-
Site-specific modification of Shigella flexneri virF mRNA by tRNA-guanine transglycosylase in vitro
-
Hurt, J. K., Olgen, S., and Garcia, G. A. (2007) Site-specific modification of Shigella flexneri virF mRNA by tRNA-guanine transglycosylase in vitro Nucleic Acids Res. 35, 4905-4913
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4905-4913
-
-
Hurt, J.K.1
Olgen, S.2
Garcia, G.A.3
-
39
-
-
1342325436
-
Identification of four genes necessary for biosynthesis of the modified nucleoside queuosine
-
Reader, J. S., Metzgar, D., Schimmel, P., and de Crécy-Lagard, V. (2004) Identification of four genes necessary for biosynthesis of the modified nucleoside queuosine J. Biol. Chem. 279, 6280-6285
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6280-6285
-
-
Reader, J.S.1
Metzgar, D.2
Schimmel, P.3
De Crécy-Lagard, V.4
-
40
-
-
15444381025
-
From cyclohydrolase to oxidoreductase: Discovery of nitrile reductase activity in a common fold
-
Van Lanen, S. G., Reader, J. S., Swairjo, M. A., de Crécy-Lagard, V., Lee, B., and Iwata-Reuyl, D. (2005) From cyclohydrolase to oxidoreductase: discovery of nitrile reductase activity in a common fold Proc. Natl. Acad. Sci. U.S.A. 102, 4264-4269
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 4264-4269
-
-
Van Lanen, S.G.1
Reader, J.S.2
Swairjo, M.A.3
De Crécy-Lagard, V.4
Lee, B.5
Iwata-Reuyl, D.6
-
41
-
-
57349131670
-
Biosynthesis of 7-deazaguanosine-modified tRNA nucleosides: A new role for GTP cyclohydrolase i
-
Phillips, G., El Yacoubi, B., Lyons, B., Alvarez, S., Iwata-Reuyl, D., and de Crécy-Lagard, V. (2008) Biosynthesis of 7-deazaguanosine-modified tRNA nucleosides: a new role for GTP cyclohydrolase I J. Bacteriol. 190, 7876-7884
-
(2008)
J. Bacteriol.
, vol.190
, pp. 7876-7884
-
-
Phillips, G.1
El Yacoubi, B.2
Lyons, B.3
Alvarez, S.4
Iwata-Reuyl, D.5
De Crécy-Lagard, V.6
-
42
-
-
84906246281
-
RNA modification subsystems in the SEED database
-
in, Landes Bioscience: Austin, Texas, United States, pp, Appendix 3.
-
De Crécy-Lagard, V. and Olson, G. (2009) RNA modification subsystems in the SEED database, in DNA and RNA editing enzymes: comparative structure, mechanism, functions, cellular interactions and evolution, Landes Bioscience: Austin, Texas, United States, pp 624-628, Appendix 3.
-
(2009)
DNA and RNA Editing Enzymes: Comparative Structure, Mechanism, Functions, Cellular Interactions and Evolution
, pp. 624-628
-
-
De Crécy-Lagard, V.1
Olson, G.2
-
43
-
-
34548733710
-
Identification of genes encoding tRNA modification enzymes by comparative genomics
-
De Crécy-Lagard, V. (2007) Identification of genes encoding tRNA modification enzymes by comparative genomics Methods Enzymol. 425, 153-183
-
(2007)
Methods Enzymol.
, vol.425
, pp. 153-183
-
-
De Crécy-Lagard, V.1
-
44
-
-
77956458716
-
Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana
-
Chen, P., Jäger, G., and Zheng, B. (2010) Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana BMC Plant Biol. 10, 201
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 201
-
-
Chen, P.1
Jäger, G.2
Zheng, B.3
-
45
-
-
33644787447
-
OrthoMCL-DB: Querying a comprehensive multi-species collection of ortholog groups
-
Chen, F., Mackey, A. J., Stoeckert, C. J., and Roos, D. S. (2006) OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups Nucleic Acids Res. 34, D363-D368
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Chen, F.1
Mackey, A.J.2
Stoeckert, C.J.3
Roos, D.S.4
-
46
-
-
34247181095
-
A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain
-
Roth, A., Winkler, W. C., Regulski, E. E., Lee, B. W. K., Lim, J., Jona, I., Barrick, J. E., Ritwik, A., Kim, J. N., Welz, R., Iwata-Reuyl, D., and Breaker, R. R. (2007) A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain Nat. Struct. Mol. Biol. 14, 308-317
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 308-317
-
-
Roth, A.1
Winkler, W.C.2
Regulski, E.E.3
Lee, B.W.K.4
Lim, J.5
Jona, I.6
Barrick, J.E.7
Ritwik, A.8
Kim, J.N.9
Welz, R.10
Iwata-Reuyl, D.11
Breaker, R.R.12
-
47
-
-
41649108068
-
Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria
-
Meyer, M. M., Roth, A., Chervin, S. M., Garcia, G. A., and Breaker, R. R. (2008) Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria RNA 14, 685-695
-
(2008)
RNA
, vol.14
, pp. 685-695
-
-
Meyer, M.M.1
Roth, A.2
Chervin, S.M.3
Garcia, G.A.4
Breaker, R.R.5
-
48
-
-
58149490653
-
A novel class of modular transporters for vitamins in prokaryotes
-
Rodionov, D. A., Hebbeln, P., Eudes, A., ter Beek, J., Rodionova, I. A., Erkens, G. B., Slotboom, D. J., Gelfand, M. S., Osterman, A. L., Hanson, A. D., and Eitinger, T. (2009) A novel class of modular transporters for vitamins in prokaryotes J. Bacteriol. 191, 42-51
-
(2009)
J. Bacteriol.
, vol.191
, pp. 42-51
-
-
Rodionov, D.A.1
Hebbeln, P.2
Eudes, A.3
Ter Beek, J.4
Rodionova, I.A.5
Erkens, G.B.6
Slotboom, D.J.7
Gelfand, M.S.8
Osterman, A.L.9
Hanson, A.D.10
Eitinger, T.11
-
49
-
-
0030792095
-
Biosynthesis of archaeosine, a novel derivative of 7-deazaguanosine specific to archaeal tRNA, proceeds via a pathway involving base replacement on the tRNA polynucleotide chain
-
Watanabe, M., Matsuo, M., Tanaka, S., Akimoto, H., Asahi, S., Nishimura, S., Katze, J. R., Hashizume, T., Crain, P. F., McCloskey, J. A., and Okada, N. (1997) Biosynthesis of archaeosine, a novel derivative of 7-deazaguanosine specific to archaeal tRNA, proceeds via a pathway involving base replacement on the tRNA polynucleotide chain J. Biol. Chem. 272, 20146-20151
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 20146-20151
-
-
Watanabe, M.1
Matsuo, M.2
Tanaka, S.3
Akimoto, H.4
Asahi, S.5
Nishimura, S.6
Katze, J.R.7
Hashizume, T.8
Crain, P.F.9
McCloskey, J.A.10
Okada, N.11
-
50
-
-
78651285748
-
CDD: A Conserved Domain Database for the functional annotation of proteins
-
Marchler-Bauer, A., Lu, S., Anderson, J. B., Chitsaz, F., Derbyshire, M. K., DeWeese-Scott, C., Fong, J. H., Geer, L. Y., Geer, R. C., Gonzales, N. R., Gwadz, M., Hurwitz, D. I., Jackson, J. D., Ke, Z., Lanczycki, C. J., Lu, F., Marchler, G. H., Mullokandov, M., Omelchenko, M. V., Robertson, C. L., Song, J. S., Thanki, N., Yamashita, R. A., Zhang, D., Zhang, N., Zheng, C., and Bryant, S. H. (2011) CDD: a Conserved Domain Database for the functional annotation of proteins Nucleic Acids Res. 39, D225-D229
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
Deweese-Scott, C.6
Fong, J.H.7
Geer, L.Y.8
Geer, R.C.9
Gonzales, N.R.10
Gwadz, M.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Lu, F.16
Marchler, G.H.17
Mullokandov, M.18
Omelchenko, M.V.19
Robertson, C.L.20
Song, J.S.21
Thanki, N.22
Yamashita, R.A.23
Zhang, D.24
Zhang, N.25
Zheng, C.26
Bryant, S.H.27
more..
-
51
-
-
34748912322
-
The PUA domain - A structural and functional overview
-
Pérez-Arellano, I., Gallego, J., and Cervera, J. (2007) The PUA domain-a structural and functional overview FEBS J. 274, 4972-4984
-
(2007)
FEBS J.
, vol.274
, pp. 4972-4984
-
-
Pérez-Arellano, I.1
Gallego, J.2
Cervera, J.3
-
52
-
-
0033046425
-
Novel predicted RNA-binding domains associated with the translation machinery
-
Aravind, L. and Koonin, E. V. (1999) Novel predicted RNA-binding domains associated with the translation machinery J. Mol. Evol. 48, 291-302
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 291-302
-
-
Aravind, L.1
Koonin, E.V.2
-
53
-
-
36549015556
-
Inference of gene function based on gene fusion events: The rosetta-stone method
-
Suhre, K. (2007) Inference of gene function based on gene fusion events: the rosetta-stone method Methods Mol. Biol. 396, 31-41
-
(2007)
Methods Mol. Biol.
, vol.396
, pp. 31-41
-
-
Suhre, K.1
-
54
-
-
84876515907
-
STRING v9.1: Protein-protein interaction networks, with increased coverage and integration
-
Franceschini, A., Szklarczyk, D., Frankild, S., Kuhn, M., Simonovic, M., Roth, A., Lin, J., Minguez, P., Bork, P., von Mering, C., and Jensen, L. J. (2013) STRING v9.1: protein-protein interaction networks, with increased coverage and integration Nucleic Acids Res. 41, D808-D815
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
Roth, A.6
Lin, J.7
Minguez, P.8
Bork, P.9
Von Mering, C.10
Jensen, L.J.11
-
55
-
-
77953255163
-
Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe
-
Kim, D.-U., Hayles, J., Kim, D., Wood, V., Park, H.-O., Won, M., Yoo, H.-S., Duhig, T., Nam, M., Palmer, G., Han, S., Jeffery, L., Baek, S.-T., Lee, H., Shim, Y. S., Lee, M., Kim, L., Heo, K.-S., Noh, E. J., Lee, A.-R., Jang, Y.-J., Chung, K.-S., Choi, S.-J., Park, J.-Y., Park, Y., Kim, H. M., Park, S.-K., Park, H.-J., Kang, E.-J., Kim, H. B., Kang, H.-S., Park, H.-M., Kim, K., Song, K., Song, K. B., Nurse, P., and Hoe, K.-L. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe Nat. Biotechnol. 28, 617-623
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 617-623
-
-
Kim, D.-U.1
Hayles, J.2
Kim, D.3
Wood, V.4
Park, H.-O.5
Won, M.6
Yoo, H.-S.7
Duhig, T.8
Nam, M.9
Palmer, G.10
Han, S.11
Jeffery, L.12
Baek, S.-T.13
Lee, H.14
Shim, Y.S.15
Lee, M.16
Kim, L.17
Heo, K.-S.18
Noh, E.J.19
Lee, A.-R.20
Jang, Y.-J.21
Chung, K.-S.22
Choi, S.-J.23
Park, J.-Y.24
Park, Y.25
Kim, H.M.26
Park, S.-K.27
Park, H.-J.28
Kang, E.-J.29
Kim, H.B.30
Kang, H.-S.31
Park, H.-M.32
Kim, K.33
Song, K.34
Song, K.B.35
Nurse, P.36
Hoe, K.-L.37
more..
-
56
-
-
0023654324
-
Isolation and structure elucidation of an epoxide derivative of the hypermodified nucleoside queuosine from Escherichia coli transfer RNA
-
Phillipson, D. W., Edmonds, C. G., Crain, P. F., Smith, D. L., Davis, D. R., and McCloskey, J. A. (1987) Isolation and structure elucidation of an epoxide derivative of the hypermodified nucleoside queuosine from Escherichia coli transfer RNA J. Biol. Chem. 262, 3462-3471
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 3462-3471
-
-
Phillipson, D.W.1
Edmonds, C.G.2
Crain, P.F.3
Smith, D.L.4
Davis, D.R.5
McCloskey, J.A.6
-
57
-
-
0034786532
-
The HMMTOP transmembrane topology prediction server
-
Tusnády, G. E. and Simon, I. (2001) The HMMTOP transmembrane topology prediction server Bioinformatics 17, 849-850
-
(2001)
Bioinformatics
, vol.17
, pp. 849-850
-
-
Tusnády, G.E.1
Simon, I.2
-
58
-
-
84883591545
-
Scalable web services for the PSIPRED Protein Analysis Workbench
-
Buchan, D. W. A., Minneci, F., Nugent, T. C. O., Bryson, K., and Jones, D. T. (2013) Scalable web services for the PSIPRED Protein Analysis Workbench Nucleic Acids Res. 41, W349-W357
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Buchan, D.W.A.1
Minneci, F.2
Nugent, T.C.O.3
Bryson, K.4
Jones, D.T.5
-
59
-
-
63849246525
-
Protein structure prediction on the Web: A case study using the Phyre server
-
Kelley, L. A. and Sternberg, M. J. E. (2009) Protein structure prediction on the Web: a case study using the Phyre server Nat. Protoc. 4, 363-371
-
(2009)
Nat. Protoc.
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.E.2
-
60
-
-
11844306632
-
A DNA glycosylase from Pyrobaculum aerophilum with an 8-oxoguanine binding mode and a noncanonical helix-hairpin-helix structure
-
Lingaraju, G. M., Sartori, A. A., Kostrewa, D., Prota, A. E., Jiricny, J., and Winkler, F. K. (2005) A DNA glycosylase from Pyrobaculum aerophilum with an 8-oxoguanine binding mode and a noncanonical helix-hairpin-helix structure Structure 13, 87-98
-
(2005)
Structure
, vol.13
, pp. 87-98
-
-
Lingaraju, G.M.1
Sartori, A.A.2
Kostrewa, D.3
Prota, A.E.4
Jiricny, J.5
Winkler, F.K.6
-
61
-
-
84870683808
-
Recent advances in the structural mechanisms of DNA glycosylases
-
Brooks, S. C., Adhikary, S., Rubinson, E. H., and Eichman, B. F. (2013) Recent advances in the structural mechanisms of DNA glycosylases Biochim. Biophys. Acta 1834, 247-271
-
(2013)
Biochim. Biophys. Acta
, vol.1834
, pp. 247-271
-
-
Brooks, S.C.1
Adhikary, S.2
Rubinson, E.H.3
Eichman, B.F.4
-
62
-
-
38549153238
-
Data growth and its impact on the SCOP database: New developments
-
Andreeva, A., Howorth, D., Chandonia, J.-M., Brenner, S. E., Hubbard, T. J. P., Chothia, C., and Murzin, A. G. (2008) Data growth and its impact on the SCOP database: new developments Nucleic Acids Res. 36, D419-D425
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Andreeva, A.1
Howorth, D.2
Chandonia, J.-M.3
Brenner, S.E.4
Hubbard, T.J.P.5
Chothia, C.6
Murzin, A.G.7
-
63
-
-
72449145463
-
Unknown" proteins and "orphan" enzymes: The missing half of the engineering parts list-and how to find it
-
Hanson, A. D., Pribat, A., Waller, J. C., and de Crécy-Lagard, V. (2010) Unknown" proteins and "orphan" enzymes: the missing half of the engineering parts list-and how to find it Biochem. J. 425, 1-11
-
(2010)
Biochem. J.
, vol.425
, pp. 1-11
-
-
Hanson, A.D.1
Pribat, A.2
Waller, J.C.3
De Crécy-Lagard, V.4
-
64
-
-
84873621983
-
Queuosine biosynthesis is required for Sinorhizobium meliloti -induced cytoskeletal modifications on HeLa cells and symbiosis with Medicago truncatula
-
Marchetti, M., Capela, D., Poincloux, R., Benmeradi, N., Auriac, M.-C., Le Ru, A., Maridonneau-Parini, I., Batut, J., and Masson-Boivin, C. (2013) Queuosine biosynthesis is required for Sinorhizobium meliloti -induced cytoskeletal modifications on HeLa cells and symbiosis with Medicago truncatula PLoS One 8, e56043
-
(2013)
PLoS One
, vol.8
, pp. 56043
-
-
Marchetti, M.1
Capela, D.2
Poincloux, R.3
Benmeradi, N.4
Auriac, M.-C.5
Le Ru, A.6
Maridonneau-Parini, I.7
Batut, J.8
Masson-Boivin, C.9
-
65
-
-
25844490964
-
Delineation of the minimal commonly deleted segment and identification of candidate tumor-suppressor genes in del(9q) acute myeloid leukemia
-
Sweetser, D. A., Peniket, A. J., Haaland, C., Blomberg, A. A., Zhang, Y., Zaidi, S. T., Dayyani, F., Zhao, Z., Heerema, N. A., Boultwood, J., Dewald, G. W., Paietta, E., Slovak, M. L., Willman, C. L., Wainscoat, J. S., Bernstein, I. D., and Daly, S. B. (2005) Delineation of the minimal commonly deleted segment and identification of candidate tumor-suppressor genes in del(9q) acute myeloid leukemia Genes Chromosomes Cancer 44, 279-291
-
(2005)
Genes Chromosomes Cancer
, vol.44
, pp. 279-291
-
-
Sweetser, D.A.1
Peniket, A.J.2
Haaland, C.3
Blomberg, A.A.4
Zhang, Y.5
Zaidi, S.T.6
Dayyani, F.7
Zhao, Z.8
Heerema, N.A.9
Boultwood, J.10
Dewald, G.W.11
Paietta, E.12
Slovak, M.L.13
Willman, C.L.14
Wainscoat, J.S.15
Bernstein, I.D.16
Daly, S.B.17
-
66
-
-
33947096867
-
Identification of PRTFDC1 silencing and aberrant promoter methylation of GPR150, ITGA8 and HOXD11 in ovarian cancers
-
Cai, L., Abe, M., Izumi, S., Imura, M., Yasugi, T., and Ushijima, T. (2007) Identification of PRTFDC1 silencing and aberrant promoter methylation of GPR150, ITGA8 and HOXD11 in ovarian cancers Life Sci. 80, 1458-1465
-
(2007)
Life Sci.
, vol.80
, pp. 1458-1465
-
-
Cai, L.1
Abe, M.2
Izumi, S.3
Imura, M.4
Yasugi, T.5
Ushijima, T.6
-
67
-
-
85027958626
-
Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells
-
Ohi, Y., Qin, H., Hong, C., Blouin, L., Polo, J. M., Guo, T., Qi, Z., Downey, S. L., Manos, P. D., Rossi, D. J., Yu, J., Hebrok, M., Hochedlinger, K., Costello, J. F., Song, J. S., and Ramalho-Santos, M. (2011) Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells Nat. Cell Biol. 13, 541-549
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 541-549
-
-
Ohi, Y.1
Qin, H.2
Hong, C.3
Blouin, L.4
Polo, J.M.5
Guo, T.6
Qi, Z.7
Downey, S.L.8
Manos, P.D.9
Rossi, D.J.10
Yu, J.11
Hebrok, M.12
Hochedlinger, K.13
Costello, J.F.14
Song, J.S.15
Ramalho-Santos, M.16
-
68
-
-
79954568242
-
Evolution of eukaryal tRNA-guanine transglycosylase: Insight gained from the heterocyclic substrate recognition by the wild-type and mutant human and Escherichia coli tRNA-guanine transglycosylases
-
Chen, Y.-C., Brooks, A. F., Goodenough-Lashua, D. M., Kittendorf, J. D., Showalter, H. D., and Garcia, G. a. (2011) Evolution of eukaryal tRNA-guanine transglycosylase: insight gained from the heterocyclic substrate recognition by the wild-type and mutant human and Escherichia coli tRNA-guanine transglycosylases Nucleic Acids Res. 39, 2834-2844
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 2834-2844
-
-
Chen, Y.-C.1
Brooks, A.F.2
Goodenough-Lashua, D.M.3
Kittendorf, J.D.4
Showalter, H.D.5
Garcia, G.A.6
-
69
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 25, 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
70
-
-
0024297354
-
Multiple sequence alignment with hierarchical clustering
-
Corpet, F. (1988) Multiple sequence alignment with hierarchical clustering Nucleic Acids Res. 16, 10881-10890
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 10881-10890
-
-
Corpet, F.1
-
71
-
-
80054078476
-
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
-
Sievers, F., Wilm, A., Dineen, D., Gibson, T. J., Karplus, K., Li, W., Lopez, R., McWilliam, H., Remmert, M., Söding, J., Thompson, J. D., and Higgins, D. G. (2011) Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega Mol. Syst. Biol. 7, 539
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 539
-
-
Sievers, F.1
Wilm, A.2
Dineen, D.3
Gibson, T.J.4
Karplus, K.5
Li, W.6
Lopez, R.7
McWilliam, H.8
Remmert, M.9
Söding, J.10
Thompson, J.D.11
Higgins, D.G.12
-
72
-
-
75549090603
-
The Pfam protein families database
-
Finn, R. D., Mistry, J., Tate, J., Coggill, P., Heger, A., Pollington, J. E., Gavin, O. L., Gunasekaran, P., Ceric, G., Forslund, K., Holm, L., Sonnhammer, E. L. L., Eddy, S. R., and Bateman, A. (2010) The Pfam protein families database Nucleic Acids Res. 38, D211-D222
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.L.12
Eddy, S.R.13
Bateman, A.14
-
73
-
-
79960004119
-
Interactive Tree of Life v2: Online annotation and display of phylogenetic trees made easy
-
Letunic, I. and Bork, P. (2011) Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy Nucleic Acids Res. 39, W475-W478
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Letunic, I.1
Bork, P.2
-
74
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
-
Katoh, K. and Standley, D. M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability Mol. Biol. Evol. 30, 772-780
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
75
-
-
0027494836
-
MUST, a computer package of Management Utilities for Sequences and Trees
-
Philippe, H. (1993) MUST, a computer package of Management Utilities for Sequences and Trees Nucleic Acids Res. 21, 5264-5272
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 5264-5272
-
-
Philippe, H.1
-
76
-
-
77954403053
-
BMGE (Block Mapping and Gathering with Entropy): A new software for selection of phylogenetic informative regions from multiple sequence alignments
-
Criscuolo, A. and Gribaldo, S. (2010) BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments BMC Evol. Biol. 10, 210
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 210
-
-
Criscuolo, A.1
Gribaldo, S.2
-
77
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., and Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 Syst. Biol. 59, 307-321
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.-F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
78
-
-
45849154166
-
An improved general amino acid replacement matrix
-
Le, S. Q. and Gascuel, O. (2008) An improved general amino acid replacement matrix Mol. Biol. Evol. 25, 1307-1320
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
79
-
-
84860109324
-
MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
-
Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A., and Huelsenbeck, J. P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space Syst. Biol. 61, 539-542
-
(2012)
Syst. Biol.
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
Teslenko, M.2
Van Der Mark, P.3
Ayres, D.L.4
Darling, A.5
Höhna, S.6
Larget, B.7
Liu, L.8
Suchard, M.A.9
Huelsenbeck, J.P.10
-
80
-
-
0032790081
-
XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density
-
McRee, D. E. (1999) XtalView/Xfit-A versatile program for manipulating atomic coordinates and electron density J. Struct. Biol. 125, 156-165
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
81
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination Acta Crystallogr., Sect. D: Biol. Crystallogr. 54, 905-921
-
(1998)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
82
-
-
79955574923
-
-
Version 1.3r1 () Schrodinger LLC, Cambridge.
-
The PyMOL Molecular Graphics System, Version 1.3r1 (2010) Schrodinger LLC, Cambridge.
-
(2010)
The PyMOL Molecular Graphics System
-
-
-
83
-
-
0034733688
-
A family of multifunctional thiamine-repressible expression vectors for fission yeast
-
Moreno, M. B., Durán, A., and Ribas, J. C. (2000) A family of multifunctional thiamine-repressible expression vectors for fission yeast Yeast 16, 861-872
-
(2000)
Yeast
, vol.16
, pp. 861-872
-
-
Moreno, M.B.1
Durán, A.2
Ribas, J.C.3
-
84
-
-
0028269495
-
Efficient targeted integration at leu1-32 and ura4-294 in Schizosaccharomyces pombe
-
Keeney, J. B. and Boeke, J. D. (1994) Efficient targeted integration at leu1-32 and ura4-294 in Schizosaccharomyces pombe Genetics 136, 849-856
-
(1994)
Genetics
, vol.136
, pp. 849-856
-
-
Keeney, J.B.1
Boeke, J.D.2
-
85
-
-
84857599173
-
Diversity of archaeosine synthesis in crenarchaeota
-
Phillips, G., Swairjo, M. A., Gaston, K. W., Bailly, M., Limbach, P. A., Iwata-Reuyl, D., and de Crécy-Lagard, V. (2012) Diversity of archaeosine synthesis in crenarchaeota ACS Chem. Biol. 7, 300-305
-
(2012)
ACS Chem. Biol.
, vol.7
, pp. 300-305
-
-
Phillips, G.1
Swairjo, M.A.2
Gaston, K.W.3
Bailly, M.4
Limbach, P.A.5
Iwata-Reuyl, D.6
De Crécy-Lagard, V.7
-
86
-
-
58149191272
-
TRNAdb 2009: Compilation of tRNA sequences and tRNA genes
-
Jühling, F., Mörl, M., Hartmann, R. K., Sprinzl, M., Stadler, P. F., and Pütz, J. (2009) tRNAdb 2009: compilation of tRNA sequences and tRNA genes Nucleic Acids Res. 37, D159-D162
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Jühling, F.1
Mörl, M.2
Hartmann, R.K.3
Sprinzl, M.4
Stadler, P.F.5
Pütz, J.6
-
87
-
-
0021982310
-
Compilation of tRNA sequences
-
Sprinzl, M., Moll, J., Meissner, F., and Hartmann, T. (1985) Compilation of tRNA sequences Nucleic Acids Res. 13 (Suppl) r1-49
-
(1985)
Nucleic Acids Res.
, vol.13
, Issue.SUPPL.
, pp. 1-49
-
-
Sprinzl, M.1
Moll, J.2
Meissner, F.3
Hartmann, T.4
-
88
-
-
17644448948
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Sprinzl, M., Hartmann, T., Meissner, F., Moll, J., Vorderwulbecke, T., and Vorderwülbecke, T. (1987) Compilation of tRNA sequences and sequences of tRNA genes Nucleic Acids Res. 15 (Suppl) r53-188
-
(1987)
Nucleic Acids Res.
, vol.15
, Issue.SUPPL.
, pp. 53-188
-
-
Sprinzl, M.1
Hartmann, T.2
Meissner, F.3
Moll, J.4
Vorderwulbecke, T.5
Vorderwülbecke, T.6
-
89
-
-
0019322446
-
The nucleotide sequence of histidine tRNA gamma of Drosophila melanogaster
-
Altwegg, M. and Kubli, E. (1980) The nucleotide sequence of histidine tRNA gamma of Drosophila melanogaster Nucleic Acids Res. 8, 3259-3262
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 3259-3262
-
-
Altwegg, M.1
Kubli, E.2
-
90
-
-
0015924554
-
Activity of a transfer RNA modifying enzyme during the development of Drosophila and its relationship to the su(s) locus
-
White, B. N. and Tener, G. M. (1973) Activity of a transfer RNA modifying enzyme during the development of Drosophila and its relationship to the su(s) locus J. Mol. Biol. 74, 635-651
-
(1973)
J. Mol. Biol.
, vol.74
, pp. 635-651
-
-
White, B.N.1
Tener, G.M.2
-
91
-
-
49249148904
-
An analysis of Q and Q* containing tRNAs during the development of Lucilia sericata, Musca domestica and Tenebrio molitor
-
White, B. N. and Lassam, N. J. (1979) An analysis of Q and Q* containing tRNAs during the development of Lucilia sericata, Musca domestica and Tenebrio molitor Insect Biochem. 9, 375-378
-
(1979)
Insect Biochem.
, vol.9
, pp. 375-378
-
-
White, B.N.1
Lassam, N.J.2
-
92
-
-
18544412008
-
The nucleotide sequences of two Lupinus luteus asparagine tRNAs
-
Barciszewska, M. Z. and Jones, D. S. (1988) The nucleotide sequences of two Lupinus luteus asparagine tRNAs Nucleic Acids Res. 16, 9349
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 9349
-
-
Barciszewska, M.Z.1
Jones, D.S.2
-
93
-
-
0000846406
-
The primary structure of the first plant tRNAHis
-
Barciszewska, M. Z., Keith, G., Dirheimer, G., and Barciszewski, J. (1986) The primary structure of the first plant tRNAHis Plant Sci. 47, 103-107
-
(1986)
Plant Sci.
, vol.47
, pp. 103-107
-
-
Barciszewska, M.Z.1
Keith, G.2
Dirheimer, G.3
Barciszewski, J.4
-
94
-
-
0006973368
-
Plant tRNA suppressors: In vivo readthrough properties and nucleotide sequence of yellow lupin seeds tRNATyr
-
Barciszewski, J., Barciszewska, M., Suter, B., and Kubli, E. (1985) Plant tRNA suppressors: In vivo readthrough properties and nucleotide sequence of yellow lupin seeds tRNATyr Plant Sci. 40, 193-196
-
(1985)
Plant Sci.
, vol.40
, pp. 193-196
-
-
Barciszewski, J.1
Barciszewska, M.2
Suter, B.3
Kubli, E.4
-
95
-
-
0029050832
-
C to U editing and modifications during the maturation of the mitochondrial tRNA(Asp) in marsupials
-
Mörl, M., Dörner, M., and Pääbo, S. (1995) C to U editing and modifications during the maturation of the mitochondrial tRNA(Asp) in marsupials Nucleic Acids Res. 23, 3380-3384
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 3380-3384
-
-
Mörl, M.1
Dörner, M.2
Pääbo, S.3
-
96
-
-
24744438421
-
Glu-Q-tRNA(Asp) synthetase coded by the yadB gene, a new paralog of aminoacyl-tRNA synthetase that glutamylates tRNA(Asp) anticodon
-
Blaise, M., Becker, H. D., Lapointe, J., Cambillau, C., Giegé, R., and Kern, D. (2005) Glu-Q-tRNA(Asp) synthetase coded by the yadB gene, a new paralog of aminoacyl-tRNA synthetase that glutamylates tRNA(Asp) anticodon Biochimie 87, 847-861
-
(2005)
Biochimie
, vol.87
, pp. 847-861
-
-
Blaise, M.1
Becker, H.D.2
Lapointe, J.3
Cambillau, C.4
Giegé, R.5
Kern, D.6
|